13-23894748-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894748
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894748
    reference: chr 13
allele count: 9033
allele frequency: 4.62850994056159e-1
allele num: 19516
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-28T>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-28T>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-28T>G
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.25e1
  variant carriers: 1186
genotype depth: GenotypeDepth
  all individuals: 12956
  bin: 2.5e0
  variant carriers: 10217
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 7.5e0
  variant carriers: 7544
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.25e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.75e1
  variant carriers: 332
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 543
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.25e1
  variant carriers: 476
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 369
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 605
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.25e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.75e1
  variant carriers: 409
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.25e1
  variant carriers: 414
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.25e1
  variant carriers: 410
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.75e1
  variant carriers: 280
genotype quality: GenotypeQuality
  all individuals: 10365
  bin: 9.75e1
  variant carriers: 10354
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 6.25e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 3297
  bin: 2.5e0
  variant carriers: 529
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 190
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 2.25e1
  variant carriers: 831
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 1.75e1
  variant carriers: 1538
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 1.25e1
  variant carriers: 2568
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.25e1
  variant carriers: 367
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.75e1
  variant carriers: 277
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 9.25e1
  variant carriers: 251
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.25e1
  variant carriers: 312
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.75e1
  variant carriers: 476
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 181
genotype quality: GenotypeQuality
  all individuals: 7381
  bin: 7.5e0
  variant carriers: 4205
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 2.75e1
  variant carriers: 447
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 7.75e1
  variant carriers: 948
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.25e1
  variant carriers: 477
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 6.75e1
  variant carriers: 312
num of homozygotes: 1970
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

13-23894748-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894748
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894749
    reference: chr 13
allele count: 1
allele frequency: 5.124000819840131e-5
allele num: 19516
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-28_579-27insG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-28_579-27insG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-28_579-27insG
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12956
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3297
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10365
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7381
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

13-23894748-TTTTTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894748
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894742
    reference: chr 13
allele count: 2
allele frequency: 1.024800163968026e-4
allele num: 19516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-26_579-21delTTTTGT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-26_579-21delTTTTGT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-26_579-21delTTTTGT
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12956
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3297
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10365
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7381
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: TTTTTTG
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ

13-23894749-TTTTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894749
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894744
    reference: chr 13
allele count: 2
allele frequency: 8.870753126940477e-5
allele num: 22546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-25_579-21delTTTGT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-25_579-21delTTTGT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-25_579-21delTTTGT
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13915
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 15052
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5895
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15652
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4259
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4848
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4296
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 2.75e1
  variant carriers: 3
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TTTTTG
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

13-23894750-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894750
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894750
    reference: chr 13
allele count: 18
allele frequency: 8.890645065691989e-4
allele num: 20246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-26T>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-26T>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-26T>A
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13535
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9352
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10393
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

13-23894750-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894750
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894750
    reference: chr 13
allele count: 9125
allele frequency: 4.507063123579966e-1
allele num: 20246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-26T>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-26T>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-26T>G
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 8.25e1
  variant carriers: 362
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.25e1
  variant carriers: 394
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.75e1
  variant carriers: 636
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 7.5e0
  variant carriers: 7936
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.25e1
  variant carriers: 428
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.25e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.75e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 9.75e1
  variant carriers: 583
genotype depth: GenotypeDepth
  all individuals: 13535
  bin: 2.5e0
  variant carriers: 9721
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 1.25e1
  variant carriers: 1243
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 370
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.75e1
  variant carriers: 384
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.75e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.25e1
  variant carriers: 468
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 1.75e1
  variant carriers: 1538
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.75e1
  variant carriers: 451
genotype quality: GenotypeQuality
  all individuals: 9352
  bin: 7.5e0
  variant carriers: 4204
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.25e1
  variant carriers: 313
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 7.75e1
  variant carriers: 949
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.25e1
  variant carriers: 368
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 239
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.75e1
  variant carriers: 278
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 6.25e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.75e1
  variant carriers: 478
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 1.25e1
  variant carriers: 2567
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 2.5e0
  variant carriers: 528
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 477
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 6.75e1
  variant carriers: 309
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 2.25e1
  variant carriers: 830
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 181
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 191
genotype quality: GenotypeQuality
  all individuals: 10393
  bin: 9.75e1
  variant carriers: 10346
num of homozygotes: 1958
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

13-23894750-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894750
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894751
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 20246
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-26_579-25insG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-26_579-25insG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-26_579-25insG
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10393
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9352
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

13-23894750-TTTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894750
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894746
    reference: chr 13
allele count: 17
allele frequency: 8.396720339820212e-4
allele num: 20246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-24_579-21delTTGT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-24_579-21delTTGT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-24_579-21delTTGT
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13535
  bin: 2.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 10393
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9352
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.75e1
  variant carriers: 8
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: TTTTG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

13-23894751-TTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894751
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894748
    reference: chr 13
allele count: 45
allele frequency: 1.885053619302949e-3
allele num: 23872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-23_579-21delTGT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-23_579-21delTGT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-23_579-21delTGT
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14212
  bin: 2.5e0
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16917
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4309
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 16376
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.5e0
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4957
  bin: 1.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6635
  bin: 1.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4481
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: TTTG
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

13-23894752-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894752
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894752
    reference: chr 13
allele count: 8724
allele frequency: 4.444218033622007e-1
allele num: 19630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-24T>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-24T>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-24T>G
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 365
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 280
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.75e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 1.25e1
  variant carriers: 1200
genotype depth: GenotypeDepth
  all individuals: 12362
  bin: 7.5e0
  variant carriers: 7593
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 396
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 584
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.25e1
  variant carriers: 480
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.25e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 262
genotype depth: GenotypeDepth
  all individuals: 18394
  bin: 2.5e0
  variant carriers: 10372
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 442
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 357
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 358
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 204
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.25e1
  variant carriers: 343
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.25e1
  variant carriers: 579
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.75e1
  variant carriers: 333
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 4.25e1
  variant carriers: 520
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 1.25e1
  variant carriers: 2552
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 5.75e1
  variant carriers: 340
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 2.75e1
  variant carriers: 721
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.75e1
  variant carriers: 458
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 6.75e1
  variant carriers: 273
genotype quality: GenotypeQuality
  all individuals: 5724
  bin: 2.5e0
  variant carriers: 2019
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.25e1
  variant carriers: 253
genotype quality: GenotypeQuality
  all individuals: 10576
  bin: 7.5e0
  variant carriers: 3740
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.25e1
  variant carriers: 247
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.75e1
  variant carriers: 373
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.25e1
  variant carriers: 488
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.25e1
  variant carriers: 1119
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 1.75e1
  variant carriers: 2286
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 4.75e1
  variant carriers: 399
genotype quality: GenotypeQuality
  all individuals: 8663
  bin: 9.75e1
  variant carriers: 7512
num of homozygotes: 1965
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

13-23894752-T-TTGTGTGTGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894752
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894762
    reference: chr 13
allele count: 8
allele frequency: 4.075394803871625e-4
allele num: 19630
alternate allele: TTGTGTGTGTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12362
  bin: 7.5e0
  variant carriers: 483
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18394
  bin: 2.5e0
  variant carriers: 2361
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 5.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 4.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.25e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 4.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.25e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 1.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 6.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 5724
  bin: 2.5e0
  variant carriers: 1040
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.75e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 2.75e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 6.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 8663
  bin: 9.75e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 10576
  bin: 7.5e0
  variant carriers: 440
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 1.25e1
  variant carriers: 121
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS

13-23894752-T-TTGTGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894752
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894758
    reference: chr 13
allele count: 4
allele frequency: 2.037697401935813e-4
allele num: 19630
alternate allele: TTGTGTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-20_579-19insTGTGTG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-20_579-19insTGTGTG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-20_579-19insTGTGTG
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18394
  bin: 2.5e0
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12362
  bin: 7.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5724
  bin: 2.5e0
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 8663
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10576
  bin: 7.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

13-23894752-T-TTGTGTGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894752
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894760
    reference: chr 13
allele count: 1
allele frequency: 5.094243504839531e-5
allele num: 19630
alternate allele: TTGTGTGTG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12362
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18394
  bin: 2.5e0
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5724
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8663
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 10576
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.25e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

13-23894752-TTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894752
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894750
    reference: chr 13
allele count: 2535
allele frequency: 1.291390728476821e-1
allele num: 19630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-21_579-20delTG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-21_579-20delTG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-21_579-20delTG
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 1.25e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 18394
  bin: 2.5e0
  variant carriers: 1207
genotype depth: GenotypeDepth
  all individuals: 12362
  bin: 7.5e0
  variant carriers: 1063
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.25e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 5.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 6.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 1.75e1
  variant carriers: 268
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 2.75e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 4.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 1.25e1
  variant carriers: 357
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.25e1
  variant carriers: 152
genotype quality: GenotypeQuality
  all individuals: 10576
  bin: 7.5e0
  variant carriers: 184
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 4.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 5724
  bin: 2.5e0
  variant carriers: 878
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 6.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 8663
  bin: 9.75e1
  variant carriers: 2162
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.25e1
  variant carriers: 34
num of homozygotes: 140
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: TTG
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

13-23894753-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894753
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894753
    reference: chr 13
allele count: 4
allele frequency: 2.172496198131653e-4
allele num: 18412
alternate allele: G
canonical: false
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15961
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12772
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4440
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5633
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 166
  num of homozygotes: 0
population: African
  type: Population
  allele count: 4
  allele frequency: 1.618122977346278e-3
  allele num: 2472
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 912
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 492
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

13-23894753-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894753
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894754
    reference: chr 13
allele count: 31
allele frequency: 1.683684553552031e-3
allele num: 18412
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-22dupG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-22dupG
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-22dupG
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15961
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5633
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4440
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12772
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

13-23894753-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894753
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894752
    reference: chr 13
allele count: 366
allele frequency: 1.987834021290463e-2
allele num: 18412
alternate allele: T
canonical: false
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15961
  bin: 7.5e0
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 2.5e0
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 1.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 2.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 6.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 1.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 5633
  bin: 2.5e0
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 6.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 4440
  bin: 2.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 9.75e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 1.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 12772
  bin: 7.5e0
  variant carriers: 53
num of homozygotes: 7
population: European (Non-Finnish)
  type: Population
  allele count: 159
  allele frequency: 1.839000693962526e-2
  allele num: 8646
  num of homozygotes: 1
population: South Asian
  type: Population
  allele count: 158
  allele frequency: 3.044315992292871e-2
  allele num: 5190
  num of homozygotes: 3
population: Latino
  type: Population
  allele count: 15
  allele frequency: 2.808988764044944e-2
  allele num: 534
  num of homozygotes: 2
population: Other
  type: Population
  allele count: 6
  allele frequency: 3.614457831325301e-2
  allele num: 166
  num of homozygotes: 1
population: European (Finnish)
population: African
population: East Asian
reference allele: TG
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

13-23894753-TGTGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894753
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894749
    reference: chr 13
allele count: 402
allele frequency: 2.183358679122312e-2
allele num: 18412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-22_579-19delGTGC
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-22_579-19delGTGC
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-22_579-19delGTGC
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15961
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 9.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12772
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4440
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5633
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 9.75e1
  variant carriers: 335
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.25e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: TGTGC
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

13-23894753-TGTGCTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894753
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894746
    reference: chr 13
allele count: 505
allele frequency: 2.742776450141212e-2
allele num: 18412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-22_579-16delGTGCTTC
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-22_579-16delGTGCTTC
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-22_579-16delGTGCTTC
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 9.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15961
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 12772
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5633
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 6.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 4440
  bin: 2.25e1
  variant carriers: 7
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: TGTGCTTC
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP

13-23894754-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894754
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894755
    reference: chr 13
allele count: 1
allele frequency: 8.833922261484099e-5
allele num: 11320
alternate allele: GT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-21dupT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-21dupT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-21dupT
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 15758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15001
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7872
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

13-23894754-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894754
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894754
    reference: chr 13
allele count: 783
allele frequency: 6.91696113074205e-2
allele num: 11320
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-22G>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-22G>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-22G>T
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 13063
  bin: 2.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 15758
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 9.75e1
  variant carriers: 727
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 1.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 15001
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 7872
  bin: 7.5e0
  variant carriers: 14
num of homozygotes: 2
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP

13-23894755-TGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894755
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894753
    reference: chr 13
allele count: 481
allele frequency: 2.922235722964763e-2
allele num: 16460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-20_579-19delGC
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-20_579-19delGC
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-20_579-19delGC
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 16694
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15306
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9041
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12271
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 9.75e1
  variant carriers: 444
genotype quality: GenotypeQuality
  all individuals: 4520
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5296
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5281
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 3.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: TGC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

13-23894756-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894756
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894756
    reference: chr 13
allele count: 327
allele frequency: 1.721777590564448e-2
allele num: 18992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-20G>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-20G>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-20G>T
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 17974
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18432
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 9.75e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 6696
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5939
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5464
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

13-23894757-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894757
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894757
    reference: chr 13
allele count: 288
allele frequency: 1.425460304890121e-2
allele num: 20204
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-19C>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-19C>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-19C>T
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18536
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 9.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6663
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 9.75e1
  variant carriers: 281
genotype quality: GenotypeQuality
  all individuals: 7791
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5549
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14877
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5551
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

13-23894759-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894759
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894759
    reference: chr 13
allele count: 28
allele frequency: 9.36893528742555e-4
allele num: 29886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-17T>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-17T>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-17T>G
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21535
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19526
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5969
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17630
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5363
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5543
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 2
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

13-23894760-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894760
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894760
    reference: chr 13
allele count: 1264
allele frequency: 6.134135688634378e-2
allele num: 20606
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-16C>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-16C>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-16C>T
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 9.75e1
  variant carriers: 502
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 22421
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17585
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.75e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 9682
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 13819
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 14868
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3461
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 8.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 9.75e1
  variant carriers: 1157
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.25e1
  variant carriers: 9
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/13-23894769-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894769
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894769
    reference: chr 13
allele count: 1
allele frequency: 2.82326369282891e-5
allele num: 35420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-7A>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-7A>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-7A>C
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6480
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22916
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 2.75e1
  variant carriers: 0
hgvs: c.579-7A>C
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

13-23894770-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894770
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894770
    reference: chr 13
allele count: 1
allele frequency: 2.785980943890344e-5
allele num: 35894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-6T>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-6T>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-6T>C
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23868
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6480
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2820
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12825
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
hgvs: c.579-6T>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

13-23894774-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894774
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894774
    reference: chr 13
allele count: 1
allele frequency: 2.711790866688361e-5
allele num: 36876
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.579-2A>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.579-2A>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.579-2A>G
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26479
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6479
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
hgvs: c.579-2A>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

13-23894778-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894778
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894778
    reference: chr 13
allele count: 2
allele frequency: 5.202372281760483e-5
allele num: 38444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.581T>C
  hgvsp: ENSP00000444100.1:p.Leu194Ser
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.581T>C
  hgvsp: ENSP00000442232.1:p.Leu194Ser
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.581T>C
  hgvsp: ENSP00000218867.3:p.Leu194Ser
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30166
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10686
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6485
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu194Ser
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

13-23894793-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894793
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894793
    reference: chr 13
allele count: 15
allele frequency: 3.087054949578102e-4
allele num: 48590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.596G>A
  hgvsp: ENSP00000444100.1:p.Arg199Gln
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.596G>A
  hgvsp: ENSP00000218867.3:p.Arg199Gln
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.596G>A
  hgvsp: ENSP00000442232.1:p.Arg199Gln
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31455
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4209
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7790
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6510
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg199Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/13-23894812-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894812
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894812
    reference: chr 13
allele count: 7
allele frequency: 9.65543877072471e-5
allele num: 72498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.615C>A
  hgvsp: ENST00000537476.1:c.615C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.615C>A
  hgvsp: ENST00000545013.1:c.615C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.615C>A
  hgvsp: ENST00000218867.3:c.615C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19500
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 961
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6540
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 17727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala205Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

13-23894820-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894820
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894820
    reference: chr 13
allele count: 3
allele frequency: 3.576452635845592e-5
allele num: 83882
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.623G>T
  hgvsp: ENSP00000218867.3:p.Gly208Val
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.623G>T
  hgvsp: ENSP00000442232.1:p.Gly208Val
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.623G>T
  hgvsp: ENSP00000444100.1:p.Gly208Val
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 6553
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 18133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
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genotype quality: GenotypeQuality
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 779
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
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genotype quality: GenotypeQuality
  all individuals: 839
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 266
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genotype quality: GenotypeQuality
  all individuals: 21607
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genotype quality: GenotypeQuality
  all individuals: 485
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genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly208Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

13-23894822-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894822
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894822
    reference: chr 13
allele count: 1
allele frequency: 1.16144018583043e-5
allele num: 86100
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.625G>T
  hgvsp: ENSP00000218867.3:p.Val209Leu
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.625G>T
  hgvsp: ENSP00000444100.1:p.Val209Leu
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.625G>T
  hgvsp: ENSP00000442232.1:p.Val209Leu
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17093
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6565
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21796
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val209Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/13-23894825-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894825
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894825
    reference: chr 13
allele count: 1
allele frequency: 1.127319459788515e-5
allele num: 88706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.628C>A
  hgvsp: ENSP00000442232.1:p.His210Asn
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.628C>A
  hgvsp: ENSP00000218867.3:p.His210Asn
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.628C>A
  hgvsp: ENSP00000444100.1:p.His210Asn
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 781
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21729
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genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
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genotype quality: GenotypeQuality
  all individuals: 15832
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 6577
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 395
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His210Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

13-23894837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894837
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894837
    reference: chr 13
allele count: 6
allele frequency: 5.932253663166637e-5
allele num: 101142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.640C>T
  hgvsp: ENSP00000444100.1:p.His214Tyr
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.640C>T
  hgvsp: ENSP00000442232.1:p.His214Tyr
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.640C>T
  hgvsp: ENSP00000218867.3:p.His214Tyr
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30513
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
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genotype quality: GenotypeQuality
  all individuals: 28852
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 461
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genotype quality: GenotypeQuality
  all individuals: 861
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
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genotype quality: GenotypeQuality
  all individuals: 1670
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His214Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

13-23894839-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894839
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894839
    reference: chr 13
allele count: 3
allele frequency: 2.90371288087034e-5
allele num: 103316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.642C>T
  hgvsp: ENST00000545013.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.642C>T
  hgvsp: ENST00000218867.3:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.642C>T
  hgvsp: ENST00000537476.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31547
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1728
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genotype quality: GenotypeQuality
  all individuals: 6613
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His214His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

13-23894840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894840
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894840
    reference: chr 13
allele count: 2
allele frequency: 1.899010615469341e-5
allele num: 105318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.643G>A
  hgvsp: ENSP00000444100.1:p.Ala215Thr
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.643G>A
  hgvsp: ENSP00000218867.3:p.Ala215Thr
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.643G>A
  hgvsp: ENSP00000442232.1:p.Ala215Thr
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6637
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala215Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

13-23894840-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894840
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894840
    reference: chr 13
allele count: 1
allele frequency: 9.495053077346703e-6
allele num: 105318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.643G>T
  hgvsp: ENSP00000442232.1:p.Ala215Ser
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.643G>T
  hgvsp: ENSP00000444100.1:p.Ala215Ser
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.643G>T
  hgvsp: ENSP00000218867.3:p.Ala215Ser
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4541
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala215Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

13-23894842-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894842
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894842
    reference: chr 13
allele count: 1
allele frequency: 9.292125852552546e-6
allele num: 107618
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.645T>A
  hgvsp: ENST00000218867.3:c.645T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.645T>A
  hgvsp: ENST00000545013.1:c.645T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.645T>A
  hgvsp: ENST00000537476.1:c.645T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6659
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6962
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32608
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4738
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala215Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ

13-23894850-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894850
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894850
    reference: chr 13
allele count: 19
allele frequency: 1.685472996948407e-4
allele num: 112728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.653T>C
  hgvsp: ENSP00000444100.1:p.Ile218Thr
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.653T>C
  hgvsp: ENSP00000218867.3:p.Ile218Thr
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.653T>C
  hgvsp: ENSP00000442232.1:p.Ile218Thr
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6730
  bin: 9.75e1
  variant carriers: 19
hgvs: p.Ile218Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

13-23894852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894852
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894852
    reference: chr 13
allele count: 4
allele frequency: 3.517163759144626e-5
allele num: 113728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.655G>A
  hgvsp: ENSP00000442232.1:p.Glu219Lys
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.655G>A
  hgvsp: ENSP00000444100.1:p.Glu219Lys
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.655G>A
  hgvsp: ENSP00000218867.3:p.Glu219Lys
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5172
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35721
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6728
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Glu219Lys
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/13-23894853-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894853
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894853
    reference: chr 13
allele count: 1
allele frequency: 8.759942534776972e-6
allele num: 114156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.656A>C
  hgvsp: ENSP00000442232.1:p.Glu219Ala
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.656A>C
  hgvsp: ENSP00000218867.3:p.Glu219Ala
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.656A>C
  hgvsp: ENSP00000444100.1:p.Glu219Ala
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36440
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35757
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 703
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6741
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 5215
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu219Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ

13-23894854-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894854
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894854
    reference: chr 13
allele count: 1
allele frequency: 8.731946700197342e-6
allele num: 114522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.657G>C
  hgvsp: ENSP00000442232.1:p.Glu219Asp
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.657G>C
  hgvsp: ENSP00000444100.1:p.Glu219Asp
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.657G>C
  hgvsp: ENSP00000218867.3:p.Glu219Asp
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3564
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 620
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genotype quality: GenotypeQuality
  all individuals: 295
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5256
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu219Asp
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

13-23894856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894856
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894856
    reference: chr 13
allele count: 3
allele frequency: 2.604573631296557e-5
allele num: 115182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.659C>T
  hgvsp: ENSP00000444100.1:p.Ala220Val
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.659C>T
  hgvsp: ENSP00000218867.3:p.Ala220Val
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.659C>T
  hgvsp: ENSP00000442232.1:p.Ala220Val
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1600
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genotype quality: GenotypeQuality
  all individuals: 36028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6769
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ala220Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

13-23894857-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894857
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894857
    reference: chr 13
allele count: 11
allele frequency: 9.501597996026605e-5
allele num: 115770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.660G>A
  hgvsp: ENST00000537476.1:c.660G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.660G>A
  hgvsp: ENST00000545013.1:c.660G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.660G>A
  hgvsp: ENST00000218867.3:c.660G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36882
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5387
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala220Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

13-23894861-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894861
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894861
    reference: chr 13
allele count: 1
allele frequency: 8.546570261354118e-6
allele num: 117006
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.664T>G
  hgvsp: ENSP00000442232.1:p.Ser222Ala
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.664T>G
  hgvsp: ENSP00000218867.3:p.Ser222Ala
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.664T>G
  hgvsp: ENSP00000444100.1:p.Ser222Ala
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6812
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser222Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

13-23894867-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894867
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894867
    reference: chr 13
allele count: 4
allele frequency: 3.380148388514256e-5
allele num: 118338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.670A>G
  hgvsp: ENSP00000444100.1:p.Met224Val
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.670A>G
  hgvsp: ENSP00000442232.1:p.Met224Val
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.670A>G
  hgvsp: ENSP00000218867.3:p.Met224Val
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37796
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5656
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6832
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met224Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

13-23894909-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894909
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894909
    reference: chr 13
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.702+10T>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.702+10T>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.702+10T>G
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6843
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genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38907
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 87
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genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

13-23894927-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894927
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894927
    reference: chr 13
allele count: 5
allele frequency: 4.133119513283846e-5
allele num: 120974
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.702+28A>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.702+28A>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.702+28A>G
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6848
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5943
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

13-23894930-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894930
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894930
    reference: chr 13
allele count: 1
allele frequency: 8.266375690242371e-6
allele num: 120972
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.702+31G>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.702+31G>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.702+31G>C
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6847
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

13-23894936-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894936
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894936
    reference: chr 13
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.702+37C>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.702+37C>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.702+37C>G
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9793
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37451
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

13-23894938-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894938
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894938
    reference: chr 13
allele count: 2
allele frequency: 1.653193142554845e-5
allele num: 120978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.702+39T>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.702+39T>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.702+39T>C
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9799
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5940
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6848
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

13-23894941-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894941
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894941
    reference: chr 13
allele count: 15
allele frequency: 1.239730895746897e-4
allele num: 120994
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.702+42T>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.702+42T>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.702+42T>A
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36800
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6858
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

13-23894943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894943
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894943
    reference: chr 13
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.702+44A>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.702+44A>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.702+44A>G
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5927
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

13-23894948-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23894948
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23894948
    reference: chr 13
allele count: 2
allele frequency: 1.653329806229747e-5
allele num: 120968
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.702+49C>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.702+49C>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.702+49C>T
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6857
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 430
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 35495
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/13-23898457-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898457
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898457
    reference: chr 13
allele count: 1
allele frequency: 8.298066550493736e-6
allele num: 120510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703-50A>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703-50A>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703-50A>C
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18773
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/13-23898459-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898459
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898459
    reference: chr 13
allele count: 4
allele frequency: 3.317684919463199e-5
allele num: 120566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703-48C>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703-48C>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703-48C>A
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 372
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genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4097
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum

13-23898461-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898461
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898461
    reference: chr 13
allele count: 19
allele frequency: 1.576371027959844e-4
allele num: 120530
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703-46G>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703-46G>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703-46G>A
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12073
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12077
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3297
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4832
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18795
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 10422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

13-23898463-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898463
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898463
    reference: chr 13
allele count: 4
allele frequency: 3.314825557305047e-5
allele num: 120670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703-44G>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703-44G>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703-44G>T
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9507
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12571
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6095
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18820
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10984
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3360
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 839
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 945
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 840
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

13-23898474-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898474
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898474
    reference: chr 13
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703-33T>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703-33T>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703-33T>A
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19002
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13271
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/13-23898483-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898483
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898483
    reference: chr 13
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703-24C>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703-24C>A
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703-24C>A
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14696
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19038
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 165
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genotype quality: GenotypeQuality
  all individuals: 13866
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

13-23898484-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898484
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898484
    reference: chr 13
allele count: 5
allele frequency: 4.132094806783247e-5
allele num: 121004
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703-23G>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703-23G>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703-23G>C
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10628
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14722
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6598
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4749
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19058
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14004
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5356
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

13-23898489-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898489
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898489
    reference: chr 13
allele count: 2018
allele frequency: 1.66718990102609e-2
allele num: 121042
alternate allele: C
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703-18T>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703-18T>C
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703-18T>C
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 9.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 5.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 14265
  bin: 2.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 6.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 3.75e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10597
  bin: 3.25e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 12971
  bin: 2.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 6.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.75e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 5.25e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4657
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3530
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20359
  bin: 9.75e1
  variant carriers: 1916
genotype quality: GenotypeQuality
  all individuals: 6421
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5249
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13638
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 85
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

13-23898490-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898490
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898490
    reference: chr 13
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703-17C>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703-17C>T
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703-17C>T
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4737
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19978
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5327
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

13-23898490-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898490
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898488
    reference: chr 13
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703-16_703-15delAT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703-16_703-15delAT
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703-16_703-15delAT
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10641
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4737
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5327
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19978
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: CAT
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

13-23898491-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898491
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898491
    reference: chr 13
allele count: 4
allele frequency: 3.303710066404573e-5
allele num: 121076
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703-16A>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703-16A>G
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703-16A>G
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4748
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3485
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19985
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

13-23898507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898507
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898507
    reference: chr 13
allele count: 2
allele frequency: 1.649756660892518e-5
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.703C>T
  hgvsp: ENSP00000444100.1:p.Leu235Phe
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.703C>T
  hgvsp: ENSP00000442232.1:p.Leu235Phe
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.703C>T
  hgvsp: ENSP00000218867.3:p.Leu235Phe
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3539
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13749
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20046
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Leu235Phe
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

13-23898509-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898509
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898509
    reference: chr 13
allele count: 81742
allele frequency: 6.744166859179564e-1
allele num: 121204
alternate allele: C
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.705T>C
  hgvsp: ENST00000218867.3:c.705T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.705T>C
  hgvsp: ENST00000537476.1:c.705T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.705T>C
  hgvsp: ENST00000545013.1:c.705T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 9.75e1
  variant carriers: 8253
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 4.25e1
  variant carriers: 3790
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 2.25e1
  variant carriers: 426
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 3.25e1
  variant carriers: 1654
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 2.75e1
  variant carriers: 857
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 5.25e1
  variant carriers: 5462
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 7.25e1
  variant carriers: 3389
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 6.25e1
  variant carriers: 4925
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 3.75e1
  variant carriers: 2707
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 8.25e1
  variant carriers: 1983
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 4.75e1
  variant carriers: 4861
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 6.75e1
  variant carriers: 4186
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 8.75e1
  variant carriers: 1546
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 5.75e1
  variant carriers: 5472
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 9.25e1
  variant carriers: 1227
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 7.75e1
  variant carriers: 2664
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 54049
  bin: 9.75e1
  variant carriers: 52449
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.25e1
  variant carriers: 188
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.75e1
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 7.25e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 6.75e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 9.25e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 6.25e1
  variant carriers: 68
hgvs: c.705T>C
num of homozygotes: 28194
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

13-23898510-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898510
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898510
    reference: chr 13
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.706G>A
  hgvsp: ENSP00000444100.1:p.Val236Met
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.706G>A
  hgvsp: ENSP00000442232.1:p.Val236Met
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.706G>A
  hgvsp: ENSP00000218867.3:p.Val236Met
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
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genotype quality: GenotypeQuality
  all individuals: 5136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42977
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val236Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

13-23898511-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898511
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898511
    reference: chr 13
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.707T>C
  hgvsp: ENSP00000218867.3:p.Val236Ala
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.707T>C
  hgvsp: ENSP00000442232.1:p.Val236Ala
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.707T>C
  hgvsp: ENSP00000444100.1:p.Val236Ala
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42978
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val236Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/13-23898517-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898517
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898517
    reference: chr 13
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.713A>C
  hgvsp: ENSP00000444100.1:p.Asp238Ala
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.713A>C
  hgvsp: ENSP00000442232.1:p.Asp238Ala
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.713A>C
  hgvsp: ENSP00000218867.3:p.Asp238Ala
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2275
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42974
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp238Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

13-23898520-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898520
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898520
    reference: chr 13
allele count: 7
allele frequency: 5.767487847079179e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.716C>T
  hgvsp: ENSP00000444100.1:p.Ala239Val
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.716C>T
  hgvsp: ENSP00000442232.1:p.Ala239Val
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.716C>T
  hgvsp: ENSP00000218867.3:p.Ala239Val
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 21
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5259
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
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genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 2277
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2611
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genotype quality: GenotypeQuality
  all individuals: 27
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genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala239Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

13-23898522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898522
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898522
    reference: chr 13
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.718G>A
  hgvsp: ENSP00000218867.3:p.Glu240Lys
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.718G>A
  hgvsp: ENSP00000442232.1:p.Glu240Lys
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.718G>A
  hgvsp: ENSP00000444100.1:p.Glu240Lys
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42977
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2277
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 25
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 2279
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genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu240Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

13-23898526-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898526
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898524
    reference: chr 13
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.727_728delTG
  hgvsp: ENSP00000444100.1:p.Cys243LeufsTer75
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.727_728delTG
  hgvsp: ENSP00000442232.1:p.Cys243LeufsTer?
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.727_728delTG
  hgvsp: ENSP00000218867.3:p.Cys243LeufsTer75
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42977
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys243LeufsTer75
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: CTG
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

13-23898528-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23898528
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 23898528
    reference: chr 13
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000218867
  ensembl transcript: ENST00000218867
  gene symbol: SGCG
  hgvsc: ENST00000218867.3:c.724G>C
  hgvsp: ENSP00000218867.3:p.Val242Leu
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000444100
  ensembl transcript: ENST00000537476
  gene symbol: SGCG
  hgvsc: ENST00000537476.1:c.724G>C
  hgvsp: ENSP00000444100.1:p.Val242Leu
  variant of: http://identifiers.org/hgnc/10809
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102683
  ensembl protein: ENSP00000442232
  ensembl transcript: ENST00000545013
  gene symbol: SGCG
  hgvsc: ENST00000545013.1:c.724G>C
  hgvsp: ENSP00000442232.1:p.Val242Leu
  variant of: http://identifiers.org/hgnc/10809
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42974
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val242Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G

GenotypeQuality
all individuals: 245
bin: 5.75e1
variant carriers: 238

Other
type: Population
allele count: 80
allele frequency: 4.301075268817204e-1
allele num: 186
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 4356
allele frequency: 5.107879924953096e-1
allele num: 8528
num of homozygotes: 976

Latino
type: Population
allele count: 230
allele frequency: 5.637254901960784e-1
allele num: 408
num of homozygotes: 60

African
type: Population
allele count: 657
allele frequency: 3.57843137254902e-1
allele num: 1836
num of homozygotes: 109

European (Finnish)
type: Population
allele count: 91
allele frequency: 7.982456140350878e-1
allele num: 114
num of homozygotes: 35

East Asian
type: Population
allele count: 357
allele frequency: 5.721153846153846e-1
allele num: 624
num of homozygotes: 95

South Asian
type: Population
allele count: 3262
allele frequency: 4.171355498721228e-1
allele num: 7820
num of homozygotes: 681

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -1.711e0

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 1.2608e1

DP
type: SiteQuality
SIO_000300: 7.05723e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.65e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQ
type: SiteQuality
SIO_000300: 3.514e1

QD
type: SiteQuality
SIO_000300: 3.004e1

GenotypeQuality
all individuals: 2516
bin: 2.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.446623093681918e-4
allele num: 1836
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.711e0

FS
type: SiteQuality
SIO_000300: 1.2608e1

QD
type: SiteQuality
SIO_000300: 3.004e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 3.514e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

DP
type: SiteQuality
SIO_000300: 7.05723e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.65e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 485
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.172607879924953e-4
allele num: 8528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.278772378516624e-4
allele num: 7820
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 1.2608e1

VQSLOD
type: SiteQuality
SIO_000300: -1.711e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.65e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 7.05723e5

QD
type: SiteQuality
SIO_000300: 3.004e1

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQ
type: SiteQuality
SIO_000300: 3.514e1

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 934
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.48015873015873e-4
allele num: 8064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 1.552e0

MQ
type: SiteQuality
SIO_000300: 5.265e1

MQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

DP
type: SiteQuality
SIO_000300: 8.22139e5

QD
type: SiteQuality
SIO_000300: 4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.53e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.206e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeQuality
all individuals: 1021
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 5.050505050505051e-4
allele num: 1980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 2.150265621047306e-3
allele num: 7906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.813e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

QD
type: SiteQuality
SIO_000300: 2.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.136e-1

FS
type: SiteQuality
SIO_000300: 1.1994e1

VQSLOD
type: SiteQuality
SIO_000300: -1.509e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 7.28434e5

MQRankSum
type: SiteQuality
SIO_000300: -1.237e0

GenotypeQuality
all individuals: 258
bin: 9.25e1
variant carriers: 251

South Asian
type: Population
allele count: 3254
allele frequency: 4.115861371110549e-1
allele num: 7906
num of homozygotes: 675

East Asian
type: Population
allele count: 365
allele frequency: 5.564024390243902e-1
allele num: 656
num of homozygotes: 94

African
type: Population
allele count: 676
allele frequency: 3.414141414141414e-1
allele num: 1980
num of homozygotes: 111

European (Non-Finnish)
type: Population
allele count: 4418
allele frequency: 4.941834451901566e-1
allele num: 8940
num of homozygotes: 973

Other
type: Population
allele count: 79
allele frequency: 4.202127659574468e-1
allele num: 188
num of homozygotes: 14

European (Finnish)
type: Population
allele count: 96
allele frequency: 6.76056338028169e-1
allele num: 142
num of homozygotes: 31

Latino
type: Population
allele count: 237
allele frequency: 5.460829493087558e-1
allele num: 434
num of homozygotes: 60

MQRankSum
type: SiteQuality
SIO_000300: -1.237e0

MQ
type: SiteQuality
SIO_000300: 3.813e1

DP
type: SiteQuality
SIO_000300: 7.28434e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.136e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 1.1994e1

VQSLOD
type: SiteQuality
SIO_000300: -1.509e0

QD
type: SiteQuality
SIO_000300: 2.947e1

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.947e1

VQSLOD
type: SiteQuality
SIO_000300: -1.509e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.136e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

FS
type: SiteQuality
SIO_000300: 1.1994e1

MQ
type: SiteQuality
SIO_000300: 3.813e1

MQRankSum
type: SiteQuality
SIO_000300: -1.237e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 7.28434e5

GenotypeQuality
all individuals: 442
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.304147465437788e-3
allele num: 434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 4.47427293064877e-4
allele num: 8940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.517834556033392e-3
allele num: 7906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.136e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.237e0

DP
type: SiteQuality
SIO_000300: 7.28434e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.509e0

FS
type: SiteQuality
SIO_000300: 1.1994e1

MQ
type: SiteQuality
SIO_000300: 3.813e1

QD
type: SiteQuality
SIO_000300: 2.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 2.385735811150176e-3
allele num: 7964
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.855287569573284e-3
allele num: 1078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 2.168805349719863e-3
allele num: 11066
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.55117e5

QD
type: SiteQuality
SIO_000300: 3.0e0

MQ
type: SiteQuality
SIO_000300: 5.617e1

FS
type: SiteQuality
SIO_000300: 1.0784e1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.161e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
all individuals: 959
bin: 6.25e1
variant carriers: 317

South Asian
type: Population
allele count: 3225
allele frequency: 4.277188328912467e-1
allele num: 7540
num of homozygotes: 682

East Asian
type: Population
allele count: 341
allele frequency: 5.328125e-1
allele num: 640
num of homozygotes: 93

European (Finnish)
type: Population
allele count: 89
allele frequency: 6.544117647058824e-1
allele num: 136
num of homozygotes: 31

African
type: Population
allele count: 636
allele frequency: 3.10546875e-1
allele num: 2048
num of homozygotes: 113

Latino
type: Population
allele count: 219
allele frequency: 5.367647058823529e-1
allele num: 408
num of homozygotes: 59

European (Non-Finnish)
type: Population
allele count: 4137
allele frequency: 4.776033248672362e-1
allele num: 8662
num of homozygotes: 973

Other
type: Population
allele count: 77
allele frequency: 3.928571428571428e-1
allele num: 196
num of homozygotes: 14

MQ
type: SiteQuality
SIO_000300: 4.196e1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 3.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 6.6245e5

FS
type: SiteQuality
SIO_000300: 1.0636e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.981e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

African
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allele count: 2
allele frequency: 9.765625e-4
allele num: 2048
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.6875e-3
allele num: 640
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.463403371045948e-4
allele num: 8662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e-1

QD
type: SiteQuality
SIO_000300: 3.177e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 4.196e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.981e-1

DP
type: SiteQuality
SIO_000300: 6.6245e5

FS
type: SiteQuality
SIO_000300: 1.0636e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 1.953125e-3
allele num: 2048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0636e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 6.6245e5

VQSLOD
type: SiteQuality
SIO_000300: 2.53e-1

MQ
type: SiteQuality
SIO_000300: 4.196e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.981e-1

QD
type: SiteQuality
SIO_000300: 3.177e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.8828125e-4
allele num: 2048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8662
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0636e1

QD
type: SiteQuality
SIO_000300: 3.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.981e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQ
type: SiteQuality
SIO_000300: 4.196e1

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e-1

DP
type: SiteQuality
SIO_000300: 6.6245e5

GenotypeQuality
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bin: 5.25e1
variant carriers: 53

South Asian
type: Population
allele count: 1076
allele frequency: 1.427055702917772e-1
allele num: 7540
num of homozygotes: 31

East Asian
type: Population
allele count: 58
allele frequency: 9.0625e-2
allele num: 640
num of homozygotes: 5

African
type: Population
allele count: 82
allele frequency: 4.00390625e-2
allele num: 2048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1236
allele frequency: 1.42692218887093e-1
allele num: 8662
num of homozygotes: 96

Other
type: Population
allele count: 32
allele frequency: 1.63265306122449e-1
allele num: 196
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 7
allele frequency: 5.147058823529412e-2
allele num: 136
num of homozygotes: 0

Latino
type: Population
allele count: 44
allele frequency: 1.07843137254902e-1
allele num: 408
num of homozygotes: 4

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.981e-1

QD
type: SiteQuality
SIO_000300: 3.177e1

FS
type: SiteQuality
SIO_000300: 1.0636e1

DP
type: SiteQuality
SIO_000300: 6.6245e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 4.196e1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5190
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.87475e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.486e-1

MQ
type: SiteQuality
SIO_000300: 5.49e1

VQSLOD
type: SiteQuality
SIO_000300: -2.908e-1

QD
type: SiteQuality
SIO_000300: 2.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e0

FS
type: SiteQuality
SIO_000300: 2.1982e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 31
allele frequency: 1.254045307443366e-2
allele num: 2472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5190
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

MQ
type: SiteQuality
SIO_000300: 5.49e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.486e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e0

DP
type: SiteQuality
SIO_000300: 6.87475e5

FS
type: SiteQuality
SIO_000300: 2.1982e1

QD
type: SiteQuality
SIO_000300: 2.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

VQSLOD
type: SiteQuality
SIO_000300: -2.908e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 5.663430420711974e-3
allele num: 2472
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.535087719298246e-2
allele num: 912
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

VQSLOD
type: SiteQuality
SIO_000300: -2.908e-1

MQ
type: SiteQuality
SIO_000300: 5.49e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.486e-1

DP
type: SiteQuality
SIO_000300: 6.87475e5

FS
type: SiteQuality
SIO_000300: 2.1982e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e0

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 101
allele frequency: 1.168170252139718e-2
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 3.012048192771084e-2
allele num: 166
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.192982456140351e-3
allele num: 912
num of homozygotes: 0

African
type: Population
allele count: 37
allele frequency: 1.496763754045307e-2
allele num: 2472
num of homozygotes: 0

South Asian
type: Population
allele count: 250
allele frequency: 4.816955684007707e-2
allele num: 5190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.310861423220974e-2
allele num: 534
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

FS
type: SiteQuality
SIO_000300: 2.1982e1

MQ
type: SiteQuality
SIO_000300: 5.49e1

DP
type: SiteQuality
SIO_000300: 6.87475e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

QD
type: SiteQuality
SIO_000300: 2.68e0

VQSLOD
type: SiteQuality
SIO_000300: -2.908e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.486e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e0

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

GenotypeQuality
all individuals: 3566
bin: 9.75e1
variant carriers: 391

Latino
type: Population
allele count: 10
allele frequency: 1.872659176029963e-2
allele num: 534
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.578947368421052e-3
allele num: 912
num of homozygotes: 0

South Asian
type: Population
allele count: 275
allele frequency: 5.298651252408478e-2
allele num: 5190
num of homozygotes: 0

African
type: Population
allele count: 41
allele frequency: 1.658576051779935e-2
allele num: 2472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 167
allele frequency: 1.931529030765672e-2
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 3.614457831325301e-2
allele num: 166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.486e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.908e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

QD
type: SiteQuality
SIO_000300: 2.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQ
type: SiteQuality
SIO_000300: 5.49e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

FS
type: SiteQuality
SIO_000300: 2.1982e1

DP
type: SiteQuality
SIO_000300: 6.87475e5

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.797914419273643e-4
allele num: 5562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.0644e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.069e0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.51e0

MQ
type: SiteQuality
SIO_000300: 5.207e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

DP
type: SiteQuality
SIO_000300: 5.98886e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.34e-2

QD
type: SiteQuality
SIO_000300: 7.38e0

VQSLOD
type: SiteQuality
SIO_000300: -2.044e0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 7
allele frequency: 8.139534883720931e-2
allele num: 86
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.557632398753894e-2
allele num: 642
num of homozygotes: 0

South Asian
type: Population
allele count: 496
allele frequency: 1.585677749360614e-1
allele num: 3128
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 249
allele frequency: 4.47680690399137e-2
allele num: 5562
num of homozygotes: 1

African
type: Population
allele count: 9
allele frequency: 7.328990228013029e-3
allele num: 1228
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 3.571428571428571e-2
allele num: 336
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.044e0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.207e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.069e0

QD
type: SiteQuality
SIO_000300: 7.38e0

FS
type: SiteQuality
SIO_000300: 5.0644e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.51e0

DP
type: SiteQuality
SIO_000300: 5.98886e5

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 4

Other
type: Population
allele count: 6
allele frequency: 4.225352112676056e-2
allele num: 142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 2.0e-2
allele num: 500
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.1441647597254e-2
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 2.142245072836333e-3
allele num: 2334
num of homozygotes: 0

South Asian
type: Population
allele count: 313
allele frequency: 7.37164390014131e-2
allele num: 4246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 137
allele frequency: 1.737255896525488e-2
allele num: 7886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.49e0

VQSLOD
type: SiteQuality
SIO_000300: -1.239e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.16e-2

MQ
type: SiteQuality
SIO_000300: 5.302e1

DP
type: SiteQuality
SIO_000300: 7.77545e5

QD
type: SiteQuality
SIO_000300: 5.32e0

FS
type: SiteQuality
SIO_000300: 3.5793e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.353e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.466e0

GenotypeQuality
all individuals: 3211
bin: 9.75e1
variant carriers: 320

African
type: Population
allele count: 3
allele frequency: 1.35623869801085e-3
allele num: 2212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 118
allele frequency: 1.215993404781533e-2
allele num: 9704
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 1.973684210526316e-2
allele num: 152
num of homozygotes: 0

South Asian
type: Population
allele count: 197
allele frequency: 4.273318872017354e-2
allele num: 4610
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 8.650519031141869e-3
allele num: 578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 8.665511265164644e-4
allele num: 1154
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.283e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.12e-2

MQ
type: SiteQuality
SIO_000300: 5.175e1

DP
type: SiteQuality
SIO_000300: 7.37228e5

FS
type: SiteQuality
SIO_000300: 4.3299e1

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
all individuals: 281
bin: 4.25e1
variant carriers: 1

African
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allele count: 2
allele frequency: 8.481764206955047e-4
allele num: 2358
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 100
allele frequency: 9.667440061871617e-3
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 180
allele frequency: 3.642250101173614e-2
allele num: 4942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 8.038585209003215e-3
allele num: 622
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 6.329113924050633e-3
allele num: 158
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.174e0

FS
type: SiteQuality
SIO_000300: 4.2613e1

MQRankSum
type: SiteQuality
SIO_000300: -2.867e0

VQSLOD
type: SiteQuality
SIO_000300: -9.346e0

QD
type: SiteQuality
SIO_000300: 8.83e0

DP
type: SiteQuality
SIO_000300: 7.4438e5

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

GenotypeQuality
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bin: 4.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1140
num of homozygotes: 0

South Asian
type: Population
allele count: 28
allele frequency: 3.536246526900733e-3
allele num: 7918
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1952
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3132
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 14392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1098
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

DP
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SIO_000300: 8.77628e5

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 2.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 368
allele frequency: 3.540504137002116e-2
allele num: 10394
num of homozygotes: 0

African
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allele count: 43
allele frequency: 1.871192341166231e-2
allele num: 2298
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.136363636363636e-2
allele num: 1144
num of homozygotes: 0

Latino
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allele count: 24
allele frequency: 4.081632653061224e-2
allele num: 588
num of homozygotes: 0

South Asian
type: Population
allele count: 802
allele frequency: 1.467252103915112e-1
allele num: 5466
num of homozygotes: 0

Other
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allele count: 14
allele frequency: 8.235294117647059e-2
allele num: 170
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.058e-1

DP
type: SiteQuality
SIO_000300: 9.18814e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.851e0

MQRankSum
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FS
type: SiteQuality
SIO_000300: 2.7415e1

QD
type: SiteQuality
SIO_000300: 6.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e0

MQ
type: SiteQuality
SIO_000300: 5.484e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.096e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9192
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2488
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European (Non-Finnish)
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allele count: 1
allele frequency: 5.946717411988583e-5
allele num: 16816
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.49e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.01244e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1532
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1370
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
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European (Non-Finnish)
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allele count: 1
allele frequency: 5.877512636652169e-5
allele num: 17014
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.35e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.749e0

MQ
type: SiteQuality
SIO_000300: 5.787e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -3.498e0

DP
type: SiteQuality
SIO_000300: 1.017088e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.1e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.714285714285714e-5
allele num: 17500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.93e-1

MQ
type: SiteQuality
SIO_000300: 5.778e1

VQSLOD
type: SiteQuality
SIO_000300: -2.521e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 6.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.014e0

DP
type: SiteQuality
SIO_000300: 1.039738e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.555e0

GenotypeQuality
all individuals: 1185
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variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1544
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4234
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1794
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 1.094451132756922e-4
allele num: 18274
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 1.058687e6

VQSLOD
type: SiteQuality
SIO_000300: -2.345e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.88e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 6.226e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

GenotypeQuality
all individuals: 374
bin: 4.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3998
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.201680672268908e-4
allele num: 2380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 4.66378360044094e-4
allele num: 23586
num of homozygotes: 0

African
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allele count: 2
allele frequency: 3.766478342749529e-4
allele num: 5310
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.733307377846993e-5
allele num: 10274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
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QD
type: SiteQuality
SIO_000300: 1.323e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

MQ
type: SiteQuality
SIO_000300: 5.566e1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

DP
type: SiteQuality
SIO_000300: 1.173348e6

VQSLOD
type: SiteQuality
SIO_000300: -1.618e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 2.947e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37384
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 7
allele frequency: 1.258992805755396e-3
allele num: 5560
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QD
type: SiteQuality
SIO_000300: 1.242e1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

DP
type: SiteQuality
SIO_000300: 1.376124e6

FS
type: SiteQuality
SIO_000300: 6.689e0

VQSLOD
type: SiteQuality
SIO_000300: 2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.593e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7182
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.309824453341546e-4
allele num: 12988
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 658
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44310
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele num: 6198
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MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.189621195533173e-5
allele num: 45670
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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Other
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East Asian
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South Asian
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VQSLOD
type: SiteQuality
SIO_000300: 3.74e-1

DP
type: SiteQuality
SIO_000300: 1.495698e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.117746717492588e-5
allele num: 47220
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South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
type: Population
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African
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 1.092060718575953e-4
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Other
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African
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European (Finnish)
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South Asian
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East Asian
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VQSLOD
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 2.290950744558992e-4
allele num: 8730
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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Other
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ReadPosRankSum
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InbreedingCoeff
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DP
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QD
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VQSLOD
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MQ
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.736050831568348e-5
allele num: 57602
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8834
num of homozygotes: 0

Latino
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allele frequency: 1.004419445560466e-4
allele num: 9956
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 786
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MQRankSum
type: SiteQuality
SIO_000300: 6.16e-1

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
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FS
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QD
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ClippingRankSum
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SIO_000300: -7.2e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 786
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14382
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.736050831568348e-5
allele num: 57602
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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VQSLOD
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59110
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 802
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South Asian
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allele frequency: 6.871907641561298e-5
allele num: 14552
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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ClippingRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.879e1

GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 15034
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 18
allele frequency: 2.893518518518518e-4
allele num: 62208
num of homozygotes: 0

Latino
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allele frequency: 9.285051067780872e-5
allele num: 10770
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

FS
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.759213e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.841959845275373e-4
allele num: 10858
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62802
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6404
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African
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allele count: 2
allele frequency: 2.148689299527288e-4
allele num: 9308
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South Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.770639e6

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.067e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.202e0

QD
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SIO_000300: 9.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.63e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8354
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15222
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.584786053882726e-5
allele num: 63100
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.143e-1

DP
type: SiteQuality
SIO_000300: 1.775807e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10924
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.179245283018868e-3
allele num: 848
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63294
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15278
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.876e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.75e-1

QD
type: SiteQuality
SIO_000300: 1.406e1

DP
type: SiteQuality
SIO_000300: 1.779421e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.08e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63682
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 1
allele frequency: 9.095870474804439e-5
allele num: 10994
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African
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allele count: 2
allele frequency: 2.125398512221041e-4
allele num: 9410
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

DP
type: SiteQuality
SIO_000300: 1.787571e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 11

Latino
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allele count: 1
allele frequency: 9.054690329590728e-5
allele num: 11044
num of homozygotes: 0

East Asian
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allele count: 10
allele frequency: 1.179523472517103e-3
allele num: 8478
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6472
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64002
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.129999999999999e-1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.709e0

QD
type: SiteQuality
SIO_000300: 1.236e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64706
num of homozygotes: 0

South Asian
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African
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allele frequency: 1.041883725776203e-4
allele num: 9598
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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num of homozygotes: 0

East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.115646882549002e-5
allele num: 65406
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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InbreedingCoeff
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.95e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.502494140272853e-5
allele num: 66556
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Latino
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num of homozygotes: 0

East Asian
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African
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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num of homozygotes: 0

South Asian
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East Asian
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Latino
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allele frequency: 4.333506673600277e-4
allele num: 11538
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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QD
type: SiteQuality
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MQ
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ClippingRankSum
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FS
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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South Asian
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allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: 3.73e0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.847723e6

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.2e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 9.130752373995618e-4
allele num: 16428
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.764e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

DP
type: SiteQuality
SIO_000300: 1.847464e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66570
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.217730150998539e-4
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.942e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.445e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.508477644361311e-5
allele num: 66292
num of homozygotes: 0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.074354e6

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.97e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 1.830384380719951e-4
allele num: 16390
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Other
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allele frequency: 0.0e0
allele num: 896
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 2.079517e6

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.333e0

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

South Asian
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allele frequency: 7.9345703125e-4
allele num: 16384
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Latino
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allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 1.938735944164405e-4
allele num: 10316
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.523113107981787e-5
allele num: 66326
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.022101111077655e-5
allele num: 66422
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele count: 0
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allele num: 11500
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.285e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.094059e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.529987760097919e-4
allele num: 6536
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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African
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allele num: 10356
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MQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

DP
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

Other
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allele num: 904
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South Asian
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allele frequency: 6.087909411907951e-5
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1835e1

ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele frequency: 3.472222222222222e-4
allele num: 8640
num of homozygotes: 1

Latino
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allele frequency: 1.731002250302925e-4
allele num: 11554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.209288880323762e-1
allele num: 10378
num of homozygotes: 80

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.009732360097324e-2
allele num: 16440
num of homozygotes: 0

East Asian
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allele count: 65
allele frequency: 7.523148148148148e-3
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
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allele count: 378
allele frequency: 5.677551143020217e-3
allele num: 66578
num of homozygotes: 2

Latino
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allele count: 130
allele frequency: 1.124762069562208e-2
allele num: 11558
num of homozygotes: 2

Other
type: Population
allele count: 24
allele frequency: 2.654867256637168e-2
allele num: 904
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MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.071e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.071e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

DP
type: SiteQuality
SIO_000300: 2.19151e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.192143e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.312e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.071e1

GenotypeQuality
all individuals: 112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2517
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.78e-1

QD
type: SiteQuality
SIO_000300: 2.85e1

FS
type: SiteQuality
SIO_000300: 5.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

DP
type: SiteQuality
SIO_000300: 2.201088e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.306e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-1

GenotypeQuality
all individuals: 49
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variant carriers: 15

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 36

GenotypeQuality
all individuals: 693
bin: 7.75e1
variant carriers: 126

African
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allele count: 4142
allele frequency: 3.988828967642527e-1
allele num: 10384
num of homozygotes: 836

East Asian
type: Population
allele count: 6650
allele frequency: 7.689639222941721e-1
allele num: 8648
num of homozygotes: 2563

Latino
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allele count: 9458
allele frequency: 8.18166089965398e-1
allele num: 11560
num of homozygotes: 3889

European (Finnish)
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allele count: 4426
allele frequency: 6.722357229647631e-1
allele num: 6584
num of homozygotes: 1467

South Asian
type: Population
allele count: 11820
allele frequency: 7.165373423860329e-1
allele num: 16496
num of homozygotes: 4265

European (Non-Finnish)
type: Population
allele count: 44640
allele frequency: 6.700087053102393e-1
allele num: 66626
num of homozygotes: 14968

Other
type: Population
allele count: 606
allele frequency: 6.688741721854304e-1
allele num: 906
num of homozygotes: 206

DP
type: SiteQuality
SIO_000300: 3.942678e6

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

QD
type: SiteQuality
SIO_000300: 2.591e1

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.872e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.42e-1

FS
type: SiteQuality
SIO_000300: 3.605e0

QD
type: SiteQuality
SIO_000300: 3.132e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.448081e6

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.807e0

FS
type: SiteQuality
SIO_000300: 1.3402e1

QD
type: SiteQuality
SIO_000300: 1.044e1

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

DP
type: SiteQuality
SIO_000300: 3.448091e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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DP
type: SiteQuality
SIO_000300: 3.448522e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.599e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -5.862e0

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

FS
type: SiteQuality
SIO_000300: 2.7747e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 7

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
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African
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allele count: 6
allele frequency: 5.770340450086555e-4
allele num: 10398
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

FS
type: SiteQuality
SIO_000300: 6.472e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.229e1

DP
type: SiteQuality
SIO_000300: 3.448781e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.296e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
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FS
type: SiteQuality
SIO_000300: 4.245e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.47e-1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.613535858488752e-5
allele num: 10402
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 1.749e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.961e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.449077e6

MQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

QD
type: SiteQuality
SIO_000300: 1.179e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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