15-99903320-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903320
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903320
    reference: chr 15
allele count: 1
allele frequency: 8.278831029058698e-6
allele num: 120790
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.674T>C
  hgvsp: ENSP00000398606.2:p.Phe225Ser
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.881T>C
  hgvsp: ENSP00000304923.3:p.Phe294Ser
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.700T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*654T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.804T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22915T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000560483
  gene symbol: LRRC28
  hgvsc: ENST00000560483.1:n.526T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*399T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.746T>C
  hgvsp: ENSP00000452863.1:p.Phe249Ser
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22915T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1604T>C
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe294Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-99903321-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903321
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903321
    reference: chr 15
allele count: 1
allele frequency: 8.277323444690924e-6
allele num: 120812
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.701T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*400T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22914T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000560483
  gene symbol: LRRC28
  hgvsc: ENST00000560483.1:n.527T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.882T>C
  hgvsp: ENST00000301981.3:c.882T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.805T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.675T>C
  hgvsp: ENST00000422500.2:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1605T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*655T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.747T>C
  hgvsp: ENST00000561276.1:c.747T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22914T>C
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe294Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

15-99903331-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903331
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903331
    reference: chr 15
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*665A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22904A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.815A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.757A>G
  hgvsp: ENSP00000452863.1:p.Ile253Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.711A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.685A>G
  hgvsp: ENSP00000398606.2:p.Ile229Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.892A>G
  hgvsp: ENSP00000304923.3:p.Ile298Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22904A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*410A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1615A>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4505
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile298Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

15-99903336-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903336
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903336
    reference: chr 15
allele count: 2
allele frequency: 1.650955077512341e-5
allele num: 121142
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.690A>G
  hgvsp: ENST00000422500.2:c.690A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*670A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1620A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.762A>G
  hgvsp: ENST00000561276.1:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.716A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.820A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.897A>G
  hgvsp: ENST00000301981.3:c.897A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22899A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22899A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*415A>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser299Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

15-99903346-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903346
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903346
    reference: chr 15
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.772A>G
  hgvsp: ENSP00000452863.1:p.Ser258Gly
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*680A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.830A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*425A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1630A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22889A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.700A>G
  hgvsp: ENSP00000398606.2:p.Ser234Gly
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.907A>G
  hgvsp: ENSP00000304923.3:p.Ser303Gly
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.726A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22889A>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3264
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser303Gly
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

15-99903350-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903350
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903350
    reference: chr 15
allele count: 2
allele frequency: 1.649919978881024e-5
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*429T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.776T>C
  hgvsp: ENSP00000452863.1:p.Leu259Pro
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.730T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*684T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.911T>C
  hgvsp: ENSP00000304923.3:p.Leu304Pro
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22885T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.834T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22885T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1634T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.704T>C
  hgvsp: ENSP00000398606.2:p.Leu235Pro
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu304Pro
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

15-99903358-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903358
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903358
    reference: chr 15
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.738C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.919C>T
  hgvsp: ENST00000301981.3:c.919C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*692C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1642C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.712C>T
  hgvsp: ENST00000422500.2:c.712C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*437C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.784C>T
  hgvsp: ENST00000561276.1:c.784C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.842C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22877C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22877C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9743
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu307Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

15-99903361-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903361
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903361
    reference: chr 15
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.741C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*695C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1645C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.787C>T
  hgvsp: ENST00000561276.1:c.787C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.922C>T
  hgvsp: ENST00000301981.3:c.922C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.845C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*440C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.715C>T
  hgvsp: ENST00000422500.2:c.715C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22874C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22874C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu308Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

15-99903366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903366
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903366
    reference: chr 15
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.792C>T
  hgvsp: ENST00000561276.1:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22869C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*445C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.927C>T
  hgvsp: ENST00000301981.3:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.850C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.746C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.720C>T
  hgvsp: ENST00000422500.2:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*700C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22869C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1650C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6710
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His309His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

15-99903367-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903367
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903367
    reference: chr 15
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*446T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1651T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.721T>C
  hgvsp: ENSP00000398606.2:p.Cys241Arg
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.747T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22868T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22868T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.928T>C
  hgvsp: ENSP00000304923.3:p.Cys310Arg
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.793T>C
  hgvsp: ENSP00000452863.1:p.Cys265Arg
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*701T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.851T>C
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys310Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

15-99903369-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903369
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903369
    reference: chr 15
allele count: 2
allele frequency: 1.649457328538911e-5
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*703C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22866C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.930C>T
  hgvsp: ENST00000301981.3:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.749C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.795C>T
  hgvsp: ENST00000561276.1:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*448C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.853C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.723C>T
  hgvsp: ENST00000422500.2:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1653C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22866C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4498
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys310Cys
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-99903370-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903370
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903370
    reference: chr 15
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.854C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22865C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.724C>A
  hgvsp: ENSP00000398606.2:p.Pro242Thr
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*449C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*704C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.931C>A
  hgvsp: ENSP00000304923.3:p.Pro311Thr
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.750C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.796C>A
  hgvsp: ENSP00000452863.1:p.Pro266Thr
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1654C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22865C>A
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5056
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro311Thr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-99903373-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903373
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903373
    reference: chr 15
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.934C>G
  hgvsp: ENSP00000304923.3:p.Leu312Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1657C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*452C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453469
  ensembl transcript: ENST00000559433
  gene symbol: LRRC28
  hgvsc: ENST00000559433.1:c.*707C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.753C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.727C>G
  hgvsp: ENSP00000398606.2:p.Leu243Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.799C>G
  hgvsp: ENSP00000452863.1:p.Leu267Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.857C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22862C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22862C>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17505
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17114
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu312Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

15-99903386-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903386
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903386
    reference: chr 15
allele count: 2
allele frequency: 1.650628063978344e-5
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.740A>G
  hgvsp: ENSP00000398606.2:p.His247Arg
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.766A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.812A>G
  hgvsp: ENSP00000452863.1:p.His271Arg
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.947A>G
  hgvsp: ENSP00000304923.3:p.His316Arg
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*465A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22849A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22849A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.870A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1670A>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4495
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His316Arg
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

15-99903389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903389
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903389
    reference: chr 15
allele count: 6
allele frequency: 4.952865232537022e-5
allele num: 121142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*468G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1673G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22846G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.815G>A
  hgvsp: ENSP00000452863.1:p.Arg272Gln
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.873G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22846G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.743G>A
  hgvsp: ENSP00000398606.2:p.Arg248Gln
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.950G>A
  hgvsp: ENSP00000304923.3:p.Arg317Gln
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.769G>A
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5048
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg317Gln
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

15-99903389-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903389
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903389
    reference: chr 15
allele count: 5
allele frequency: 4.127387693780853e-5
allele num: 121142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.743G>T
  hgvsp: ENSP00000398606.2:p.Arg248Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.815G>T
  hgvsp: ENSP00000452863.1:p.Arg272Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22846G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22846G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.950G>T
  hgvsp: ENSP00000304923.3:p.Arg317Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.873G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1673G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.769G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*468G>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4493
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg317Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

15-99903392-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903392
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903392
    reference: chr 15
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.772G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.818G>A
  hgvsp: ENSP00000452863.1:p.Cys273Tyr
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.876G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1676G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*471G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22843G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.953G>A
  hgvsp: ENSP00000304923.3:p.Cys318Tyr
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22843G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.746G>A
  hgvsp: ENSP00000398606.2:p.Cys249Tyr
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17493
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17062
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3923
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Cys318Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

15-99903392-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903392
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903392
    reference: chr 15
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.953G>T
  hgvsp: ENSP00000304923.3:p.Cys318Phe
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1676G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22843G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22843G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.746G>T
  hgvsp: ENSP00000398606.2:p.Cys249Phe
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.876G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.818G>T
  hgvsp: ENSP00000452863.1:p.Cys273Phe
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*471G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.772G>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys318Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

15-99903401-CTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903401
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903399
    reference: chr 15
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*482_*483delAT
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1687_871+1688delAT
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22832_210-22831delAT
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.964_965delAT
  hgvsp: ENSP00000304923.3:p.Met322ValfsTer27
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.757_758delAT
  hgvsp: ENSP00000398606.2:p.Met253ValfsTer27
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22832_169-22831delAT
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.783_784delAT
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.887_888delAT
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.829_830delAT
  hgvsp: ENSP00000452863.1:p.Met277ValfsTer?
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17008
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met322ValfsTer27
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CTA
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP

15-99903403-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903403
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903403
    reference: chr 15
allele count: 6
allele frequency: 4.9573666468372e-5
allele num: 121032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1687A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22832A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.757A>G
  hgvsp: ENSP00000398606.2:p.Met253Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*482A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.887A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.783A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.964A>G
  hgvsp: ENSP00000304923.3:p.Met322Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22832A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.829A>G
  hgvsp: ENSP00000452863.1:p.Met277Val
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17492
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met322Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

15-99903414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903414
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903414
    reference: chr 15
allele count: 2
allele frequency: 1.653876686954221e-5
allele num: 120928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1698C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*493C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.794C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.768C>T
  hgvsp: ENST00000422500.2:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.840C>T
  hgvsp: ENST00000561276.1:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.975C>T
  hgvsp: ENST00000301981.3:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.898C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22821C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22821C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile325Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

15-99903415-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903415
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903415
    reference: chr 15
allele count: 3
allele frequency: 2.481266438390154e-5
allele num: 120906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22820G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.795G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*494G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.841G>A
  hgvsp: ENSP00000452863.1:p.Val281Ile
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22820G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.899G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1699G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.976G>A
  hgvsp: ENSP00000304923.3:p.Val326Ile
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.769G>A
  hgvsp: ENSP00000398606.2:p.Val257Ile
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9750
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17487
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Val326Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/15-99903425-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903425
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903425
    reference: chr 15
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.805A>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22810A>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.779A>C
  hgvsp: ENSP00000398606.2:p.Lys260Thr
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22810A>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.986A>C
  hgvsp: ENSP00000304923.3:p.Lys329Thr
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.909A>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1709A>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*504A>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.851A>C
  hgvsp: ENSP00000452863.1:p.Lys284Thr
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5046
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys329Thr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

15-99903427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903427
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903427
    reference: chr 15
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1711C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.988C>T
  hgvsp: ENSP00000304923.3:p.Leu330Phe
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22808C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.853C>T
  hgvsp: ENSP00000452863.1:p.Leu285Phe
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.807C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*506C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.911C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.781C>T
  hgvsp: ENSP00000398606.2:p.Leu261Phe
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22808C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu330Phe
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-99903438-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903438
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903438
    reference: chr 15
allele count: 1
allele frequency: 8.29242404139578e-6
allele num: 120592
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.999G>A
  hgvsp: ENST00000301981.3:c.999G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404206
  ensembl transcript: ENST00000442993
  gene symbol: LRRC28
  hgvsc: ENST00000442993.2:c.*517G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.9G>A
  hgvsp: ENST00000560236.1:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.818G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.922G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22797G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.864G>A
  hgvsp: ENST00000561276.1:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22797G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.792G>A
  hgvsp: ENST00000422500.2:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1722G>A
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3923
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu333Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-99903444-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903444
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903444
    reference: chr 15
allele count: 1
allele frequency: 8.298617450332775e-6
allele num: 120502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22791G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.870G>A
  hgvsp: ENST00000561276.1:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.798G>A
  hgvsp: ENST00000422500.2:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.928G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.15G>A
  hgvsp: ENST00000560236.1:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22791G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.824G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1728G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1005G>A
  hgvsp: ENST00000301981.3:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5039
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu335Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-99903446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903446
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903446
    reference: chr 15
allele count: 1
allele frequency: 8.299995020002988e-6
allele num: 120482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.872C>T
  hgvsp: ENSP00000452863.1:p.Thr291Met
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.17C>T
  hgvsp: ENSP00000454182.1:p.Thr6Met
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22789C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.930C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1730C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1007C>T
  hgvsp: ENSP00000304923.3:p.Thr336Met
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.826C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.800C>T
  hgvsp: ENSP00000398606.2:p.Thr267Met
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22789C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3923
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr336Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

15-99903447-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903447
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903447
    reference: chr 15
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.931G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1731G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22788G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22788G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.827G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.18G>A
  hgvsp: ENST00000560236.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1008G>A
  hgvsp: ENST00000301981.3:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.873G>A
  hgvsp: ENST00000561276.1:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.801G>A
  hgvsp: ENST00000422500.2:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr336Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

15-99903449-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903449
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903449
    reference: chr 15
allele count: 2
allele frequency: 1.660660610790973e-5
allele num: 120434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.875C>T
  hgvsp: ENSP00000452863.1:p.Pro292Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.20C>T
  hgvsp: ENSP00000454182.1:p.Pro7Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22786C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.803C>T
  hgvsp: ENSP00000398606.2:p.Pro268Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.933C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1010C>T
  hgvsp: ENSP00000304923.3:p.Pro337Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.829C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1733C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22786C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6624
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16498
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5030
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro337Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

15-99903451-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903451
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903451
    reference: chr 15
allele count: 6
allele frequency: 4.982974835977079e-5
allele num: 120410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1012A>G
  hgvsp: ENSP00000304923.3:p.Met338Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22784A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.805A>G
  hgvsp: ENSP00000398606.2:p.Met269Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.877A>G
  hgvsp: ENSP00000452863.1:p.Met293Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22784A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.935A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.22A>G
  hgvsp: ENSP00000454182.1:p.Met8Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1735A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.831A>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met338Val
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

15-99903465-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903465
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903465
    reference: chr 15
allele count: 1
allele frequency: 8.325840077263796e-6
allele num: 120108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.949C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1026C>T
  hgvsp: ENST00000301981.3:c.1026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.891C>T
  hgvsp: ENST00000561276.1:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.36C>T
  hgvsp: ENST00000560236.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1749C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.845C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.819C>T
  hgvsp: ENST00000422500.2:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22770C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22770C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15976
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His342His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

15-99903476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903476
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903476
    reference: chr 15
allele count: 42
allele frequency: 3.50309440005338e-4
allele num: 119894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22759C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.856C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.824+6C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1760C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22759C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.896+6C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.41+6C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.954+6C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1031+6C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11308
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9733
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1031+6C>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum

15-99903491-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903491
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903491
    reference: chr 15
allele count: 2
allele frequency: 1.673388108904098e-5
allele num: 119518
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.954+21A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22744A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1775A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.896+21A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1031+21A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.871A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.41+21A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22744A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.824+21A>G
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

15-99903494-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903494
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903493
    reference: chr 15
allele count: 135
allele frequency: 1.129820567755758e-3
allele num: 119488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.877delG
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22738delG
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1781delG
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22738delG
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.954+27delG
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.41+27delG
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.824+27delG
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1031+27delG
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.896+27delG
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 11121
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9701
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: AG
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

15-99903497-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903497
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903497
    reference: chr 15
allele count: 2
allele frequency: 1.675126053235506e-5
allele num: 119394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1781G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.41+27G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22738G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.954+27G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.824+27G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.877G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1031+27G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.896+27G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22738G>T
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

15-99903504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903504
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903504
    reference: chr 15
allele count: 1
allele frequency: 8.386728840283135e-6
allele num: 119236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1788C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.41+34C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22731C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22731C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.824+34C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.884C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.954+34C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1031+34C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.896+34C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4896
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4414
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3069
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/15-99903506-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903506
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903506
    reference: chr 15
allele count: 1
allele frequency: 8.390387971539804e-6
allele num: 119184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.886C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.896+36C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1031+36C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1790C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22729C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.954+36C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.41+36C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22729C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.824+36C>A
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11737
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4403
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

15-99903508-G-GGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903508
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903510
    reference: chr 15
allele count: 1
allele frequency: 8.400537634408602e-6
allele num: 119040
alternate allele: GGC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.41+39_41+40dupGC
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.889_890dupGC
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22726_210-22725dupGC
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1793_871+1794dupGC
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22726_169-22725dupGC
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.824+39_824+40dupGC
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.896+39_896+40dupGC
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1031+39_1031+40dupGC
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.954+39_954+40dupGC
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 10575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

15-99903513-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99903513
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99903513
    reference: chr 15
allele count: 1
allele frequency: 8.404773911581778e-6
allele num: 118980
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1031+43G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.871+1797G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000558890
  gene symbol: LRRC28
  hgvsc: ENST00000558890.1:n.893G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.896+43G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.954+43G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.824+43G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22722G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22722G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.41+43G>T
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

15-99926186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926186
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926186
    reference: chr 15
allele count: 34
allele frequency: 2.800612839986161e-4
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1032-49C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-49C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.897-49C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.489-49C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.872-49C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-49C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.42-49C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.825-49C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.955-49C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44289
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD

15-99926190-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926190
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926190
    reference: chr 15
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.897-45A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.825-45A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1032-45A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-45A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.489-45A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.42-45A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-45A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.872-45A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.955-45A>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44287
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

15-99926192-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926192
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926192
    reference: chr 15
allele count: 6
allele frequency: 4.942339373970346e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.825-43T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.872-43T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.42-43T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.897-43T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.955-43T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-43T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-43T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.489-43T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1032-43T>C
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44287
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

15-99926193-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926193
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926193
    reference: chr 15
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-42C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.872-42C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-42C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.489-42C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1032-42C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.955-42C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.42-42C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.897-42C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.825-42C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44287
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53467
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

15-99926199-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926199
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926199
    reference: chr 15
allele count: 4
allele frequency: 3.294947198471145e-5
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.489-36C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-36C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-36C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.825-36C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.897-36C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.42-36C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.872-36C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.955-36C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1032-36C>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44287
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

15-99926206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926206
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926206
    reference: chr 15
allele count: 131
allele frequency: 1.079041876709169e-3
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.897-29C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-29C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.489-29C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.825-29C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.955-29C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-29C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.872-29C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1032-29C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.42-29C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44286
  bin: 9.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

15-99926207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926207
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926207
    reference: chr 15
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-28G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.825-28G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.872-28G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-28G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.489-28G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.897-28G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.42-28G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.955-28G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1032-28G>A
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44269
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS

15-99926213-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926213
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926213
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.955-22C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.42-22C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-22C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.897-22C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.872-22C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1032-22C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-22C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.489-22C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.825-22C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44268
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53461
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

15-99926220-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926220
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926220
    reference: chr 15
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.42-15T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.489-15T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-15T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.872-15T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-15T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.955-15T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.897-15T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1032-15T>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.825-15T>C
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44268
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

15-99926226-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926226
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926226
    reference: chr 15
allele count: 71
allele frequency: 5.847856883998287e-4
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.489-9C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.210-9C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.825-9C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1032-9C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.42-9C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.872-9C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.169-9C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.897-9C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.955-9C>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44273
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53464
  bin: 9.75e1
  variant carriers: 71
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

15-99926240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926240
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926240
    reference: chr 15
allele count: 10
allele frequency: 8.23641814647646e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.47C>T
  hgvsp: ENSP00000454182.1:p.Thr16Ile
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.215C>T
  hgvsp: ENSP00000332035.5:p.Thr72Ile
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.830C>T
  hgvsp: ENSP00000398606.2:p.Thr277Ile
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.174C>T
  hgvsp: ENST00000558879.1:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000452863
  ensembl transcript: ENST00000561276
  gene symbol: LRRC28
  hgvsc: ENST00000561276.1:c.902C>T
  hgvsp: ENST00000561276.1:c.902C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.494C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.960C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.877C>T
  hgvsp: ENSP00000404520.2:p.Gln293Ter
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1037C>T
  hgvsp: ENSP00000304923.3:p.Thr346Ile
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44259
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln293Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

15-99926242-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926242
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926242
    reference: chr 15
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.176A>G
  hgvsp: ENSP00000453313.1:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.217A>G
  hgvsp: ENSP00000332035.5:p.Thr73Ala
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.496A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.49A>G
  hgvsp: ENSP00000454182.1:p.Thr17Ala
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1039A>G
  hgvsp: ENSP00000304923.3:p.Thr347Ala
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.832A>G
  hgvsp: ENSP00000398606.2:p.Thr278Ala
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.962A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.879A>G
  hgvsp: ENST00000447360.2:c.879A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44256
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr347Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-99926244-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926244
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926244
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.964T>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.219T>G
  hgvsp: ENST00000331450.5:c.219T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.881T>G
  hgvsp: ENSP00000404520.2:p.Leu294Arg
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.51T>G
  hgvsp: ENST00000560236.1:c.51T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.834T>G
  hgvsp: ENST00000422500.2:c.834T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1041T>G
  hgvsp: ENST00000301981.3:c.1041T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.178T>G
  hgvsp: ENSP00000453313.1:p.Cys60Gly
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.498T>G
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44254
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu294Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

15-99926244-TGTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926244
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926240
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.223_226delAGTT
  hgvsp: ENSP00000332035.5:p.Ser75LeufsTer17
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.502_505delAGTT
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.885_888delAGTT
  hgvsp: ENSP00000404520.2:p.Leu295PhefsTer15
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.968_971delAGTT
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1045_1048delAGTT
  hgvsp: ENSP00000304923.3:p.Ser349LeufsTer17
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.55_58delAGTT
  hgvsp: ENSP00000454182.1:p.Ser19LeufsTer17
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.838_841delAGTT
  hgvsp: ENSP00000398606.2:p.Ser280LeufsTer17
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.182_*2delAGTT
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44254
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser349LeufsTer17
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: TGTTA
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

15-99926245-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926245
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926245
    reference: chr 15
allele count: 7
allele frequency: 5.765587678115476e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.220G>C
  hgvsp: ENSP00000332035.5:p.Val74Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.52G>C
  hgvsp: ENSP00000454182.1:p.Val18Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.882G>C
  hgvsp: ENST00000447360.2:c.882G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1042G>C
  hgvsp: ENSP00000304923.3:p.Val348Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.179G>C
  hgvsp: ENSP00000453313.1:p.Cys60Ser
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.835G>C
  hgvsp: ENSP00000398606.2:p.Val279Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.965G>C
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.499G>C
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44253
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53452
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Val348Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

15-99926262-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926262
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926262
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1059C>G
  hgvsp: ENSP00000304923.3:p.Tyr353Ter
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.516C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.899C>G
  hgvsp: ENSP00000404520.2:p.Thr300Ser
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.982C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.69C>G
  hgvsp: ENSP00000454182.1:p.Tyr23Ter
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.852C>G
  hgvsp: ENSP00000398606.2:p.Tyr284Ter
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*13C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.237C>G
  hgvsp: ENSP00000332035.5:p.Tyr79Ter
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44254
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr353Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

15-99926265-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926265
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926265
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1062C>T
  hgvsp: ENST00000301981.3:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.902C>T
  hgvsp: ENSP00000404520.2:p.Ala301Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.855C>T
  hgvsp: ENST00000422500.2:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.240C>T
  hgvsp: ENST00000331450.5:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.519C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.72C>T
  hgvsp: ENST00000560236.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*16C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.985C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44253
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53451
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala301Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

15-99926277-G-GTGTCTGCAGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926277
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926288
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: GTGTCTGCAGAC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsp: ENSP00000304923.3:p.Phe363ValfsTer8
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.86_96dupGTCTGCAGACT
  hgvsp: ENSP00000454182.1:p.Phe33ValfsTer8
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsp: ENSP00000398606.2:p.Phe294ValfsTer8
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsp: ENSP00000404520.2:p.Leu310SerfsTer5
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsp: ENSP00000332035.5:p.Phe89ValfsTer8
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44252
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53452
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe363ValfsTer8
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/15-99926281-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926281
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926281
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.256C>A
  hgvsp: ENSP00000332035.5:p.Leu86Met
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1078C>A
  hgvsp: ENSP00000304923.3:p.Leu360Met
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.871C>A
  hgvsp: ENSP00000398606.2:p.Leu291Met
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.88C>A
  hgvsp: ENSP00000454182.1:p.Leu30Met
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1001C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.535C>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.918C>A
  hgvsp: ENST00000447360.2:c.918C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*32C>A
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44252
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu360Met
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

15-99926283-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926283
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926283
    reference: chr 15
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.258G>T
  hgvsp: ENST00000331450.5:c.258G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1080G>T
  hgvsp: ENST00000301981.3:c.1080G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.873G>T
  hgvsp: ENST00000422500.2:c.873G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1003G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.90G>T
  hgvsp: ENST00000560236.1:c.90G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.920G>T
  hgvsp: ENSP00000404520.2:p.Cys307Phe
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*34G>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.537G>T
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44253
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys307Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

15-99926285-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926285
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926285
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*36A>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.922A>T
  hgvsp: ENSP00000404520.2:p.Arg308Ter
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1082A>T
  hgvsp: ENSP00000304923.3:p.Gln361Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.875A>T
  hgvsp: ENSP00000398606.2:p.Gln292Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.539A>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.260A>T
  hgvsp: ENSP00000332035.5:p.Gln87Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.92A>T
  hgvsp: ENSP00000454182.1:p.Gln31Leu
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1005A>T
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44251
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg308Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

15-99926287-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926287
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926287
    reference: chr 15
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.262A>G
  hgvsp: ENSP00000332035.5:p.Thr88Ala
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1007A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.877A>G
  hgvsp: ENSP00000398606.2:p.Thr293Ala
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1084A>G
  hgvsp: ENSP00000304923.3:p.Thr362Ala
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.541A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.924A>G
  hgvsp: ENST00000447360.2:c.924A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.94A>G
  hgvsp: ENSP00000454182.1:p.Thr32Ala
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*38A>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44251
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr362Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

15-99926290-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926290
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926290
    reference: chr 15
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.265T>G
  hgvsp: ENSP00000332035.5:p.Phe89Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1010T>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.927T>G
  hgvsp: ENST00000447360.2:c.927T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.880T>G
  hgvsp: ENSP00000398606.2:p.Phe294Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1087T>G
  hgvsp: ENSP00000304923.3:p.Phe363Val
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.544T>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*41T>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.97T>G
  hgvsp: ENSP00000454182.1:p.Phe33Val
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44251
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe363Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-99926295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926295
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926295
    reference: chr 15
allele count: 7
allele frequency: 5.765587678115476e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.932C>T
  hgvsp: ENSP00000404520.2:p.Thr311Ile
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1015C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.885C>T
  hgvsp: ENST00000422500.2:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1092C>T
  hgvsp: ENST00000301981.3:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.102C>T
  hgvsp: ENST00000560236.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.549C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.270C>T
  hgvsp: ENST00000331450.5:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28355
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44250
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr311Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

15-99926307-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926307
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926307
    reference: chr 15
allele count: 66
allele frequency: 5.436215076436478e-4
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.897A>G
  hgvsp: ENSP00000398606.2:p.Ter299TrpextTer1
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.561A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.282A>G
  hgvsp: ENSP00000332035.5:p.Ter94TrpextTer1
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1027A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.1104A>G
  hgvsp: ENSP00000304923.3:p.Ter368TrpextTer1
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*58A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.114A>G
  hgvsp: ENSP00000454182.1:p.Ter38TrpextTer1
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.*5A>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44266
  bin: 9.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53459
  bin: 9.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ter368TrpextTer1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

15-99926314-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926314
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926314
    reference: chr 15
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*65C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.*7C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.*7C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.*12C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.*7C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.568C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.*7C>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1034C>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44248
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS

15-99926317-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926317
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926317
    reference: chr 15
allele count: 67
allele frequency: 5.518672882724083e-4
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.*10A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.*10A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1037A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.*10A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.*15A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*68A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.571A>G
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.*10A>G
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44251
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

15-99926325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926325
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926325
    reference: chr 15
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.*18C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.*18C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*76C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1045C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.*18C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.579C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.*23C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44233
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

15-99926327-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926327
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926327
    reference: chr 15
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.*20G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.581G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*78G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.*20G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.*20G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.*25G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1047G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44233
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

15-99926331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926331
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926331
    reference: chr 15
allele count: 16
allele frequency: 1.317978879388458e-4
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.*24C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*82C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.*24C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1051C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.*24C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.*29C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.585C>T
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.*24C>T
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44233
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

15-99926332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99926332
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 99926332
    reference: chr 15
allele count: 6
allele frequency: 4.942339373970346e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000404520
  ensembl transcript: ENST00000447360
  gene symbol: LRRC28
  hgvsc: ENST00000447360.2:c.*30G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000561431
  gene symbol: LRRC28
  hgvsc: ENST00000561431.1:n.586G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168904
  ensembl transcript: ENST00000559819
  gene symbol: LRRC28
  hgvsc: ENST00000559819.1:n.1052G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000454182
  ensembl transcript: ENST00000560236
  gene symbol: LRRC28
  hgvsc: ENST00000560236.1:c.*25G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000398606
  ensembl transcript: ENST00000422500
  gene symbol: LRRC28
  hgvsc: ENST00000422500.2:c.*25G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000453313
  ensembl transcript: ENST00000558879
  gene symbol: LRRC28
  hgvsc: ENST00000558879.1:c.*83G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000332035
  ensembl transcript: ENST00000331450
  gene symbol: LRRC28
  hgvsc: ENST00000331450.5:c.*25G>A
  variant of: http://identifiers.org/hgnc/28355
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168904
  ensembl protein: ENSP00000304923
  ensembl transcript: ENST00000301981
  gene symbol: LRRC28
  hgvsc: ENST00000301981.3:c.*25G>A
  variant of: http://identifiers.org/hgnc/28355
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44229
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17516
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3255
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3924
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5077
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4504
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6685
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 2.265102e6

FS
type: SiteQuality
SIO_000300: 1.847e0

VQSLOD
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

QD
type: SiteQuality
SIO_000300: 1.119e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4505
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5080
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17515
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6680
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16767
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505343971097396e-5
allele num: 66430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.026e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 2.265317e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

FS
type: SiteQuality
SIO_000300: 7.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.644e1

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3924
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17515
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6704
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.391e1

MQ
type: SiteQuality
SIO_000300: 5.933e1

VQSLOD
type: SiteQuality
SIO_000300: -3.835e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.267e0

MQRankSum
type: SiteQuality
SIO_000300: -8.73e-1

DP
type: SiteQuality
SIO_000300: 2.268557e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6706
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17514
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4504
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5073
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16984
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.312e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

FS
type: SiteQuality
SIO_000300: 5.488e0

DP
type: SiteQuality
SIO_000300: 2.269334e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.143e0

GenotypeQuality
all individuals: 112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17059
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5068
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17513
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4500
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6707
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.235e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

DP
type: SiteQuality
SIO_000300: 2.270189e6

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

GenotypeQuality
all individuals: 17511
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17086
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6709
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4499
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5066
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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Latino
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South Asian
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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MQ
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QD
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66662
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African
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Other
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BaseQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele num: 6608
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Other
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African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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DP
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VQSLOD
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MQRankSum
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QD
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66662
num of homozygotes: 0

African
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European (Finnish)
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Other
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East Asian
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Latino
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South Asian
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Finnish)
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East Asian
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Latino
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African
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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QD
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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DP
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ClippingRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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QD
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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MQ
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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DP
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MQRankSum
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FS
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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DP
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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DP
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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European (Finnish)
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African
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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FS
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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Latino
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South Asian
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ClippingRankSum
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MQ
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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South Asian
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FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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BaseQRankSum
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MQRankSum
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.252e-1

MQ
type: SiteQuality
SIO_000300: 5.888e1

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66404
num of homozygotes: 0

South Asian
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allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 2.262991e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506160195198361e-5
allele num: 66394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 2.262741e6

FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508477644361311e-5
allele num: 66292
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.878e1

MQRankSum
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FS
type: SiteQuality
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -4.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.259057e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.151e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.509980974239725e-5
allele num: 66226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.866e1

BaseQRankSum
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SIO_000300: 5.33e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510391493475109e-5
allele num: 66208
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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Other
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MQ
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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European (Finnish)
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South Asian
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allele frequency: 1.21758188238159e-4
allele num: 16426
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DP
type: SiteQuality
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
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allele num: 8614
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Other
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allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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African
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allele frequency: 2.938295788442703e-4
allele num: 10210
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ClippingRankSum
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QD
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BaseQRankSum
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6583
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3921
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514463122822959e-5
allele num: 66030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.250981e6

QD
type: SiteQuality
SIO_000300: 1.201e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 6.036e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15478
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17469
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 4997
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 38
allele frequency: 4.419632472668062e-3
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516392199678525e-5
allele num: 65946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.845245417640546e-4
allele num: 16258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.176e1

FS
type: SiteQuality
SIO_000300: 1.429e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.245265e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.258e0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6278
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13466
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3924
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17440
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.327205026762858e-4
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65758
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.098e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.68e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

DP
type: SiteQuality
SIO_000300: 2.223768e6

GenotypeQuality
all individuals: 178
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 4432
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variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6243
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17547
bin: 9.75e1
variant carriers: 134

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 116
allele frequency: 1.764312222425017e-3
allele num: 65748
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.137158852344297e-3
allele num: 11432
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16128
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.949514947535142e-4
allele num: 10102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

DP
type: SiteQuality
SIO_000300: 2.22239e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.011e1

VQSLOD
type: SiteQuality
SIO_000300: 6.59e0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17447
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 941
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
all individuals: 204
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4937
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variant carriers: 0

GenotypeQuality
all individuals: 4428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13285
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522255373561469e-5
allele num: 65692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.207324643078833e-5
allele num: 16110
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.348e0

DP
type: SiteQuality
SIO_000300: 2.215548e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.432e0

FS
type: SiteQuality
SIO_000300: 2.936e0

QD
type: SiteQuality
SIO_000300: 1.06e1

GenotypeQuality
all individuals: 377
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
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variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 831
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variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17436
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 199
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12063
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523647001462701e-5
allele num: 65632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.68e-1

QD
type: SiteQuality
SIO_000300: 1.46e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.82e0

DP
type: SiteQuality
SIO_000300: 2.203903e6

GenotypeQuality
all individuals: 1787
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3046
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4865
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3912
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17426
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1105
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.251562890722681e-5
allele num: 15996
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.574e0

VQSLOD
type: SiteQuality
SIO_000300: -8.879e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 2.199832e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.011e0

FS
type: SiteQuality
SIO_000300: 2.564e0

MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.083e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 6.97e0

GenotypeQuality
all individuals: 1518
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3912
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17423
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
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variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4394
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variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9889
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52587890625e-5
allele num: 65536
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.523e0

DP
type: SiteQuality
SIO_000300: 2.186948e6

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 6.049e1

FS
type: SiteQuality
SIO_000300: 3.136e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.75e-1

QD
type: SiteQuality
SIO_000300: 1.898e1

GenotypeQuality
all individuals: 585
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17419
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2896
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65518
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 1.574e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.181433e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.216e0

GenotypeQuality
all individuals: 940
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 34

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
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GenotypeQuality
all individuals: 1607
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 34
allele frequency: 2.059607463048219e-3
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.692e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

DP
type: SiteQuality
SIO_000300: 7.241058e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

FS
type: SiteQuality
SIO_000300: 8.35e-1

QD
type: SiteQuality
SIO_000300: 1.352e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.564e0

MQRankSum
type: SiteQuality
SIO_000300: -4.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

DP
type: SiteQuality
SIO_000300: 7.238718e6

QD
type: SiteQuality
SIO_000300: 1.551e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
all individuals: 1197
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.765904285988853e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.75e-1

DP
type: SiteQuality
SIO_000300: 7.238831e6

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.596e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.296e0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.022e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.053e0

DP
type: SiteQuality
SIO_000300: 7.237961e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 1.302e1

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495729057395475e-5
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 7.238411e6

FS
type: SiteQuality
SIO_000300: 6.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

QD
type: SiteQuality
SIO_000300: 1.452e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 110
allele frequency: 1.648384583108554e-3
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.511944360447536e-3
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.239341085271318e-4
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 1.348e0

DP
type: SiteQuality
SIO_000300: 7.245184e6

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.357e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

African
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num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.89e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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VQSLOD
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QD
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 737
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.253e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

MQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 7.219176e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.49e-1

QD
type: SiteQuality
SIO_000300: 1.338e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.41e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 42
allele frequency: 2.543604651162791e-3
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.596044351213665e-4
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 7.224819e6

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

FS
type: SiteQuality
SIO_000300: 5.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.211e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.162e1

GenotypeQuality
all individuals: 1215
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.048846269103986e-4
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.309e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

FS
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 7.210919e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.048846269103986e-4
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.295e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.77e0

DP
type: SiteQuality
SIO_000300: 7.209125e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1216
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.26e-1

DP
type: SiteQuality
SIO_000300: 7.208088e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

QD
type: SiteQuality
SIO_000300: 4.37e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 576
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
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SIO_000300: 3.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.26e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.208088e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.183137525915688e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
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MQRankSum
type: SiteQuality
SIO_000300: 8.73e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.38e-1

DP
type: SiteQuality
SIO_000300: 7.208321e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.104e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 908
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African
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MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

QD
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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MQ
type: SiteQuality
SIO_000300: 5.921e1

FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
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num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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African
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East Asian
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FS
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QD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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African
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Other
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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Other
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66738
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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East Asian
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

Latino
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African
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South Asian
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Other
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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QD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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European (Finnish)
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VQSLOD
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MQRankSum
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MQ
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Latino
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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European (Finnish)
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Latino
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African
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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African
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East Asian
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQ
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ReadPosRankSum
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SIO_000300: 4.05e-1

DP
type: SiteQuality
SIO_000300: 7.199209e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53436
bin: 9.75e1
variant carriers: 67

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 66
allele frequency: 6.342494714587738e-3
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

DP
type: SiteQuality
SIO_000300: 7.198546e6

QD
type: SiteQuality
SIO_000300: 1.555e1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53427
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.254e0

FS
type: SiteQuality
SIO_000300: 3.238e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 7.192219e6

QD
type: SiteQuality
SIO_000300: 1.24e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

GenotypeQuality
all individuals: 743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53427
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

FS
type: SiteQuality
SIO_000300: 2.059e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
SIO_000300: 1.787e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.995e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 7.192046e6

VQSLOD
type: SiteQuality
SIO_000300: -8.087e-1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53428
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 948
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.79834552211965e-4
allele num: 66728
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.27e0

DP
type: SiteQuality
SIO_000300: 7.191499e6

QD
type: SiteQuality
SIO_000300: 1.41e1

VQSLOD
type: SiteQuality
SIO_000300: 6.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.977e1