11-63523619-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63523619
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63523619
    reference: chr 11
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2694T>C
  hgvsp: ENST00000540798.1:c.2694T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.642T>C
  hgvsp: ENST00000537981.1:c.642T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.386T>C
  hgvsp: ENSP00000346492.4:p.Ile129Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2973T>C
  hgvsp: ENST00000339997.4:c.2973T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-2009T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.699T>C
  hgvsp: ENST00000356000.3:c.699T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-2009T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3030T>C
  hgvsp: ENST00000377819.5:c.3030T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile129Thr
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

11-63523620-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63523620
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63523620
    reference: chr 11
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-2008C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2974C>G
  hgvsp: ENSP00000344106.4:p.Gln992Glu
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.387C>G
  hgvsp: ENSP00000346492.4:p.Ile129Met
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.700C>G
  hgvsp: ENSP00000348279.3:p.Gln234Glu
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-2008C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3031C>G
  hgvsp: ENSP00000367050.5:p.Gln1011Glu
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.643C>G
  hgvsp: ENSP00000440874.1:p.Gln215Glu
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2695C>G
  hgvsp: ENSP00000442733.1:p.Gln899Glu
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln1011Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

11-63523632-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63523632
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63523632
    reference: chr 11
allele count: 4
allele frequency: 3.294838635277837e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.655A>G
  hgvsp: ENSP00000440874.1:p.Ile219Val
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.399A>G
  hgvsp: ENST00000354497.4:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3043A>G
  hgvsp: ENSP00000367050.5:p.Ile1015Val
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-1996A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2986A>G
  hgvsp: ENSP00000344106.4:p.Ile996Val
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.712A>G
  hgvsp: ENSP00000348279.3:p.Ile238Val
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-1996A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2707A>G
  hgvsp: ENSP00000442733.1:p.Ile903Val
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5095
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile1015Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

11-63523648-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63523648
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63523648
    reference: chr 11
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.665+6T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3053+6T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-1980T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2996+6T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.722+6T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-1980T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2717+6T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.409+6T>G
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.3053+6T>G
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

11-63523672-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63523672
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63523672
    reference: chr 11
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.722+30G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2996+30G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-1956G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-1956G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3053+30G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2717+30G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.665+30G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.409+30G>C
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

11-63523691-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63523691
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63523691
    reference: chr 11
allele count: 3
allele frequency: 2.472350876036327e-5
allele num: 121342
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3053+49C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2717+49C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-1937C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.665+49C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.409+49C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-1937C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.722+49C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2996+49C>G
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2916
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39786
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/11-63523692-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63523692
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63523692
    reference: chr 11
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.409+50C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3053+50C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.665+50C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2717+50C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2996+50C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-1936C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-1936C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.722+50C>A
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-63523692-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63523692
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63523692
    reference: chr 11
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2996+50C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3053+50C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.409+50C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-1936C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-1936C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.665+50C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2717+50C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.722+50C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

11-63525579-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525579
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525579
    reference: chr 11
allele count: 1
allele frequency: 9.203357384773966e-6
allele num: 108656
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-49A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-49A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-49A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-49A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-49A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-49A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-49A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-49A>G
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15741
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

11-63525583-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525583
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525583
    reference: chr 11
allele count: 64
allele frequency: 5.88700627334106e-4
allele num: 108714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-45C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-45C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-45C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-45C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-45C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-45C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-45C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-45C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11552
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18315
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4591
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

11-63525587-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525587
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525587
    reference: chr 11
allele count: 1
allele frequency: 9.160696945823638e-6
allele num: 109162
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-41T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-41T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-41T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-41T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-41T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-41T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-41T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-41T>C
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21464
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

11-63525588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525588
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525588
    reference: chr 11
allele count: 1
allele frequency: 9.162207725573555e-6
allele num: 109144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-40G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-40G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-40G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-40G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-40G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-40G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-40G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-40G>A
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11848
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4502
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4171
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-63525593-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525593
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525593
    reference: chr 11
allele count: 1
allele frequency: 9.151977742390131e-6
allele num: 109266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-35C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-35C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-35C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-35C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-35C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-35C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-35C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-35C>A
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4228
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

11-63525594-ACTTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525594
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525590
    reference: chr 11
allele count: 5
allele frequency: 4.563542769522836e-5
allele num: 109564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-25_2718-22delCTTT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-25_3054-22delCTTT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-25_607-22delCTTT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-25_*96-22delCTTT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-25_666-22delCTTT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-25_410-22delCTTT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-25_723-22delCTTT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-25_2997-22delCTTT
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25475
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: ACTTT
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

11-63525598-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525598
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525598
    reference: chr 11
allele count: 1
allele frequency: 9.076551636502261e-6
allele num: 110174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-30T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-30T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-30T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-30T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-30T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-30T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-30T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-30T>G
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27419
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4469
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-63525602-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525602
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525602
    reference: chr 11
allele count: 1
allele frequency: 9.010632546404758e-6
allele num: 110980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-26T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-26T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-26T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-26T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-26T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-26T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-26T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-26T>C
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5297
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

11-63525602-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525602
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525602
    reference: chr 11
allele count: 548
allele frequency: 4.937826635429807e-3
allele num: 110980
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-26T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-26T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-26T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-26T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-26T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-26T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-26T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-26T>G
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 1.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13400
  bin: 2.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 1.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 29644
  bin: 2.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 4546
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5297
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 10
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

11-63525607-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525607
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525607
    reference: chr 11
allele count: 142
allele frequency: 1.264672877219857e-3
allele num: 112282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-21T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-21T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-21T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-21T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-21T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-21T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-21T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-21T>C
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 14061
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31942
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 40846
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4817
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 9.75e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

11-63525608-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525608
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525609
    reference: chr 11
allele count: 1
allele frequency: 8.885887433577992e-6
allele num: 112538
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-16dupC
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-16dupC
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-16dupC
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-16dupC
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-16dupC
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-16dupC
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-16dupC
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-16dupC
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

11-63525610-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525610
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525610
    reference: chr 11
allele count: 7
allele frequency: 6.180687998869817e-5
allele num: 113256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-18C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-18C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-18C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-18C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-18C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-18C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-18C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-18C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14541
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

11-63525611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525611
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525611
    reference: chr 11
allele count: 1
allele frequency: 8.798324798958279e-6
allele num: 113658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-17C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-17C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-17C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-17C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-17C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-17C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-17C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-17C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5036
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3972
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-63525611-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525611
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525611
    reference: chr 11
allele count: 1
allele frequency: 8.798324798958279e-6
allele num: 113658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-17C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-17C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-17C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-17C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-17C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-17C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-17C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-17C>G
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43091
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3972
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

11-63525615-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525615
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525615
    reference: chr 11
allele count: 1
allele frequency: 8.703826201998399e-6
allele num: 114892
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-13C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-13C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-13C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-13C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-13C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-13C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-13C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-13C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

11-63525622-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525622
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525622
    reference: chr 11
allele count: 1
allele frequency: 8.56971462850287e-6
allele num: 116690
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-6C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-6C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-6C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-6C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-6C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-6C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-6C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-6C>G
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
hgvs: c.3054-6C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

11-63525622-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525622
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525622
    reference: chr 11
allele count: 7
allele frequency: 5.99880023995201e-5
allele num: 116690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-6C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-6C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-6C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-6C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-6C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-6C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-6C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-6C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5377
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
hgvs: c.3054-6C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-63525623-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525623
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525623
    reference: chr 11
allele count: 1
allele frequency: 8.548177528550913e-6
allele num: 116984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-5A>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-5A>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-5A>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-5A>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-5A>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-5A>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-5A>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-5A>T
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45810
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
hgvs: c.3054-5A>T
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

11-63525624-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525624
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525624
    reference: chr 11
allele count: 1
allele frequency: 8.532277606184194e-6
allele num: 117202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-4A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-4A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-4A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-4A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-4A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-4A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-4A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-4A>G
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15944
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
hgvs: c.3054-4A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

11-63525625-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525625
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525625
    reference: chr 11
allele count: 1
allele frequency: 8.516726851536417e-6
allele num: 117416
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.723-3T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2718-3T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.2997-3T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.666-3T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*96-3T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.410-3T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.607-3T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3054-3T>C
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
hgvs: c.3054-3T>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

11-63525635-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525635
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525635
    reference: chr 11
allele count: 1
allele frequency: 8.41779184484326e-6
allele num: 118796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.730G>A
  hgvsp: ENSP00000348279.3:p.Ala244Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.673G>A
  hgvsp: ENSP00000440874.1:p.Ala225Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.614G>A
  hgvsp: ENSP00000340903.2:p.Ser205Asn
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2725G>A
  hgvsp: ENSP00000442733.1:p.Ala909Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*103G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.3004G>A
  hgvsp: ENSP00000344106.4:p.Ala1002Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3061G>A
  hgvsp: ENSP00000367050.5:p.Ala1021Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.417G>A
  hgvsp: ENST00000354497.4:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala1021Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/11-63525649-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525649
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525649
    reference: chr 11
allele count: 1
allele frequency: 8.342510094437214e-6
allele num: 119868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.744A>C
  hgvsp: ENST00000356000.3:c.744A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.628A>C
  hgvsp: ENSP00000340903.2:p.Asn210His
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*117A>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2739A>C
  hgvsp: ENST00000540798.1:c.2739A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.3018A>C
  hgvsp: ENST00000339997.4:c.3018A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3075A>C
  hgvsp: ENST00000377819.5:c.3075A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.431A>C
  hgvsp: ENSP00000346492.4:p.Glu144Ala
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.687A>C
  hgvsp: ENST00000537981.1:c.687A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5899
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu144Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

11-63525652-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525652
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525652
    reference: chr 11
allele count: 4
allele frequency: 3.33350000833375e-5
allele num: 119994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.434C>T
  hgvsp: ENSP00000346492.4:p.Ser145Leu
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.3021C>T
  hgvsp: ENST00000339997.4:c.3021C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3078C>T
  hgvsp: ENST00000377819.5:c.3078C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.631C>T
  hgvsp: ENSP00000340903.2:p.Arg211Cys
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2742C>T
  hgvsp: ENST00000540798.1:c.2742C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.690C>T
  hgvsp: ENST00000537981.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.747C>T
  hgvsp: ENST00000356000.3:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*120C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser145Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

11-63525652-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525652
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525652
    reference: chr 11
allele count: 1
allele frequency: 8.333750020834376e-6
allele num: 119994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2742C>G
  hgvsp: ENSP00000442733.1:p.Ile914Met
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.631C>G
  hgvsp: ENSP00000340903.2:p.Arg211Gly
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.3021C>G
  hgvsp: ENSP00000344106.4:p.Ile1007Met
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.434C>G
  hgvsp: ENSP00000346492.4:p.Ser145Trp
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.690C>G
  hgvsp: ENSP00000440874.1:p.Ile230Met
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3078C>G
  hgvsp: ENSP00000367050.5:p.Ile1026Met
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.747C>G
  hgvsp: ENSP00000348279.3:p.Ile249Met
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*120C>G
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile1026Met
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

11-63525653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525653
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525653
    reference: chr 11
allele count: 2
allele frequency: 1.666611112962901e-5
allele num: 120004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.632G>A
  hgvsp: ENSP00000340903.2:p.Arg211His
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.3022G>A
  hgvsp: ENSP00000344106.4:p.Ala1008Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.748G>A
  hgvsp: ENSP00000348279.3:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2743G>A
  hgvsp: ENSP00000442733.1:p.Ala915Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.435G>A
  hgvsp: ENST00000354497.4:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.691G>A
  hgvsp: ENSP00000440874.1:p.Ala231Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3079G>A
  hgvsp: ENSP00000367050.5:p.Ala1027Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*121G>A
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala1027Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

11-63525653-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525653
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525653
    reference: chr 11
allele count: 1
allele frequency: 8.333055564814507e-6
allele num: 120004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.3022G>T
  hgvsp: ENSP00000344106.4:p.Ala1008Ser
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3079G>T
  hgvsp: ENSP00000367050.5:p.Ala1027Ser
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.748G>T
  hgvsp: ENSP00000348279.3:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.691G>T
  hgvsp: ENSP00000440874.1:p.Ala231Ser
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2743G>T
  hgvsp: ENSP00000442733.1:p.Ala915Ser
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.435G>T
  hgvsp: ENST00000354497.4:c.435G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.632G>T
  hgvsp: ENSP00000340903.2:p.Arg211Leu
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*121G>T
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47486
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1027Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/11-63525655-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525655
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525655
    reference: chr 11
allele count: 3
allele frequency: 2.599157872849197e-5
allele num: 115422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.3024C>A
  hgvsp: ENST00000339997.4:c.3024C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.693C>A
  hgvsp: ENST00000537981.1:c.693C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.750C>A
  hgvsp: ENST00000356000.3:c.750C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*123C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.634C>A
  hgvsp: ENSP00000340903.2:p.Gln212Lys
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.437C>A
  hgvsp: ENSP00000346492.4:p.Pro146Gln
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2745C>A
  hgvsp: ENST00000540798.1:c.2745C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3081C>A
  hgvsp: ENST00000377819.5:c.3081C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17284
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln212Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/11-63525655-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525655
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525656
    reference: chr 11
allele count: 36
allele frequency: 3.118989447419036e-4
allele num: 115422
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.3032dupA
  hgvsp: ENSP00000344106.4:p.Ala1012GlyfsTer28
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3089dupA
  hgvsp: ENSP00000367050.5:p.Ala1031GlyfsTer28
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*131dupA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.758dupA
  hgvsp: ENSP00000348279.3:p.Ala254GlyfsTer28
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.445dupA
  hgvsp: ENSP00000346492.4:p.Arg149LysfsTer4
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.701dupA
  hgvsp: ENSP00000440874.1:p.Ala235GlyfsTer28
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2753dupA
  hgvsp: ENSP00000442733.1:p.Ala919GlyfsTer28
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.642dupA
  hgvsp: ENSP00000340903.2:p.Gly215ArgfsTer67
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30153
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17284
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala1031GlyfsTer28
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/11-63525655-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525655
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525654
    reference: chr 11
allele count: 32
allele frequency: 2.772435064372476e-4
allele num: 115422
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.445delA
  hgvsp: ENSP00000346492.4:p.Arg149GlyfsTer28
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2753delA
  hgvsp: ENSP00000442733.1:p.Lys918ArgfsTer67
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.3032delA
  hgvsp: ENSP00000344106.4:p.Lys1011ArgfsTer67
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.642delA
  hgvsp: ENSP00000340903.2:p.Gly215AlafsTer3
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*131delA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.701delA
  hgvsp: ENSP00000440874.1:p.Lys234ArgfsTer67
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3089delA
  hgvsp: ENSP00000367050.5:p.Lys1030ArgfsTer67
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.758delA
  hgvsp: ENSP00000348279.3:p.Lys253ArgfsTer67
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17284
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 30153
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 42094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys1030ArgfsTer67
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: CA
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

11-63525664-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525664
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525664
    reference: chr 11
allele count: 10
allele frequency: 8.276775368316503e-5
allele num: 120820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.3033G>T
  hgvsp: ENSP00000344106.4:p.Lys1011Asn
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.643G>T
  hgvsp: ENSP00000340903.2:p.Gly215Cys
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.702G>T
  hgvsp: ENSP00000440874.1:p.Lys234Asn
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.759G>T
  hgvsp: ENSP00000348279.3:p.Lys253Asn
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.2754G>T
  hgvsp: ENSP00000442733.1:p.Lys918Asn
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.446G>T
  hgvsp: ENSP00000346492.4:p.Arg149Met
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*132G>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.3090G>T
  hgvsp: ENSP00000367050.5:p.Lys1030Asn
  variant of: http://identifiers.org/hgnc/10469
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5965
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys1030Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-63525675-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525675
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525675
    reference: chr 11
allele count: 1
allele frequency: 8.262004692818665e-6
allele num: 121036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.457T>A
  hgvsp: ENSP00000346492.4:p.Tyr153Asn
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*2T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.654T>A
  hgvsp: ENSP00000340903.2:p.Ser218Arg
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*143T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*2T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*2T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*2T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*2T>A
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49261
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6337
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr153Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

11-63525681-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525681
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525681
    reference: chr 11
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*8G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.463G>A
  hgvsp: ENSP00000346492.4:p.Glu155Lys
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*8G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*149G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.660G>A
  hgvsp: ENSP00000340903.2:p.Trp220Ter
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*8G>A
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Trp220Ter
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-63525695-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525695
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525693
    reference: chr 11
allele count: 2
allele frequency: 1.650328415354656e-5
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*24_*25delCA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*165_*166delCA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*24_*25delCA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*24_*25delCA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.479_480delCA
  hgvsp: ENSP00000346492.4:p.Thr160SerfsTer3
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*24_*25delCA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.676_677delCA
  hgvsp: ENSP00000340903.2:p.Gln226ValfsTer55
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*24_*25delCA
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr160SerfsTer3
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: AAC
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

11-63525701-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525701
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525702
    reference: chr 11
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*29dupA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*29dupA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*29dupA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*29dupA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*170dupA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.681dupA
  hgvsp: ENSP00000340903.2:p.Leu228ThrfsTer54
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.484dupA
  hgvsp: ENSP00000346492.4:p.Thr162AsnfsTer2
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*29dupA
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6364
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr162AsnfsTer2
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

11-63525703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525703
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525703
    reference: chr 11
allele count: 2
allele frequency: 1.649865535958819e-5
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*30C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.485C>T
  hgvsp: ENSP00000346492.4:p.Thr162Ile
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*30C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*30C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.682C>T
  hgvsp: ENST00000341307.2:c.682C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*30C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*171C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*30C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr162Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/11-63525713-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525713
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525713
    reference: chr 11
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*181A>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.692A>C
  hgvsp: ENSP00000340903.2:p.His231Pro
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*40A>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.495A>C
  hgvsp: ENST00000354497.4:c.495A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*40A>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*40A>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*40A>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*40A>C
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His231Pro
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum

11-63525713-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525713
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525713
    reference: chr 11
allele count: 2
allele frequency: 1.649321304283287e-5
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.692A>G
  hgvsp: ENSP00000340903.2:p.His231Arg
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*40A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*40A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*40A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*40A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.495A>G
  hgvsp: ENST00000354497.4:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*40A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*181A>G
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31227
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His231Arg
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

11-63525716-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525716
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525716
    reference: chr 11
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.695T>G
  hgvsp: ENSP00000340903.2:p.Leu232Ter
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.498T>G
  hgvsp: ENSP00000346492.4:p.Phe166Leu
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*43T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*43T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*184T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*43T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*43T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*43T>G
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6369
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu232Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-63525722-TTATA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525722
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525718
    reference: chr 11
allele count: 5
allele frequency: 4.122963256151461e-5
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*50_*53delTATA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*50_*53delTATA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*191_*194delTATA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*50_*53delTATA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*50_*53delTATA
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.702_705delTATA
  hgvsp: ENSP00000340903.2:p.Ile235ArgfsTer15
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.505_508delTATA
  hgvsp: ENSP00000346492.4:p.Tyr169ThrfsTer7
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*50_*53delTATA
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21553
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr169ThrfsTer7
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: TTATA
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

11-63525725-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525725
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525725
    reference: chr 11
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*52T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.507T>C
  hgvsp: ENST00000354497.4:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*52T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*52T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.704T>C
  hgvsp: ENSP00000340903.2:p.Ile235Thr
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*52T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*52T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*193T>C
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile235Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

11-63525727-A-ACGTCGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525727
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525734
    reference: chr 11
allele count: 2
allele frequency: 1.64923970049807e-5
allele num: 121268
alternate allele: ACGTCGAC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.514_515insACCGTCG
  hgvsp: ENSP00000346492.4:p.Val172AspfsTer16
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*59_*60insACCGTCG
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*59_*60insACCGTCG
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.711_712insACCGTCG
  hgvsp: ENSP00000340903.2:p.Leu238ThrfsTer46
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*59_*60insACCGTCG
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*59_*60insACCGTCG
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*200_*201insACCGTCG
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*59_*60insACCGTCG
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50076
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val172AspfsTer16
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

11-63525729-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525729
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525729
    reference: chr 11
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.511G>A
  hgvsp: ENSP00000346492.4:p.Val171Ile
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*56G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*56G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*56G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*197G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*56G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.708G>A
  hgvsp: ENST00000341307.2:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*56G>A
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val171Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-63525731-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525731
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525731
    reference: chr 11
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*58C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.513C>A
  hgvsp: ENST00000354497.4:c.513C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*58C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.710C>A
  hgvsp: ENSP00000340903.2:p.Ser237Ter
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*58C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*199C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*58C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*58C>A
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser237Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

11-63525732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525732
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525732
    reference: chr 11
allele count: 2
allele frequency: 1.649212501030758e-5
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.711G>A
  hgvsp: ENST00000341307.2:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*59G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*200G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*59G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*59G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*59G>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.514G>A
  hgvsp: ENSP00000346492.4:p.Val172Ile
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*59G>A
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val172Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

11-63525737-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525737
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525737
    reference: chr 11
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*64T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*64T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.716T>A
  hgvsp: ENSP00000340903.2:p.Leu239His
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.519T>A
  hgvsp: ENST00000354497.4:c.519T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*64T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*205T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*64T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*64T>A
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50099
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu239His
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP

11-63525737-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525737
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525737
    reference: chr 11
allele count: 4
allele frequency: 3.298697014679201e-5
allele num: 121260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*64T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*205T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*64T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*64T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.519T>G
  hgvsp: ENST00000354497.4:c.519T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*64T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*64T>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.716T>G
  hgvsp: ENSP00000340903.2:p.Leu239Arg
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6383
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu239Arg
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

11-63525744-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525744
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525744
    reference: chr 11
allele count: 5
allele frequency: 4.124119500486646e-5
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.526A>G
  hgvsp: ENSP00000346492.4:p.Met176Val
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*71A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*212A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.723A>G
  hgvsp: ENST00000341307.2:c.723A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*71A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*71A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*71A>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*71A>G
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50039
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met176Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

11-63525761-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525761
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525761
    reference: chr 11
allele count: 29
allele frequency: 2.394477838694762e-4
allele num: 121112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*229G>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*88G>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*88G>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*88G>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*14G>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*88G>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.543G>T
  hgvsp: ENSP00000346492.4:p.Gln181His
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*88G>T
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21607
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30871
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln181His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD

11-63525763-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525763
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525763
    reference: chr 11
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*90G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*231G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*90G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*90G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*90G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*90G>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.545G>C
  hgvsp: ENSP00000346492.4:p.Cys182Ser
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*16G>C
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys182Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

11-63525765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525765
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525765
    reference: chr 11
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*92C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*92C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*92C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*233C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.547C>T
  hgvsp: ENSP00000346492.4:p.Gln183Ter
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*92C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*92C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*18C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln183Ter
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

11-63525775-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525775
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525775
    reference: chr 11
allele count: 1
allele frequency: 8.288162845823595e-6
allele num: 120654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*102C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*102C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.557C>G
  hgvsp: ENSP00000346492.4:p.Pro186Arg
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*28C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*102C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*102C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*102C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*243C>G
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro186Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

11-63525778-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525778
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525778
    reference: chr 11
allele count: 25
allele frequency: 2.0767914402964e-4
allele num: 120378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*105C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*31C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*105C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*246C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.560C>T
  hgvsp: ENSP00000346492.4:p.Ala187Val
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*105C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*105C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*105C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30081
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21407
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6238
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala187Val
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

11-63525787-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525787
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525786
    reference: chr 11
allele count: 130
allele frequency: 1.130257872680798e-3
allele num: 115018
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*123delT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*123delT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*49delT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*123delT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*264delT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*123delT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*123delT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.578delT
  hgvsp: ENSP00000346492.4:p.Leu193Ter
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 26123
  bin: 2.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20059
  bin: 2.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 3.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2894
  bin: 2.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 4.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 3.75e1
  variant carriers: 15
hgvs: p.Leu193Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: CT
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/11-63525787-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525787
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525787
    reference: chr 11
allele count: 1
allele frequency: 8.694291328313829e-6
allele num: 115018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.569C>A
  hgvsp: ENSP00000346492.4:p.Ala190Asp
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*114C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*40C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*114C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*114C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*114C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*255C>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*114C>A
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala190Asp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-63525787-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525787
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525788
    reference: chr 11
allele count: 15
allele frequency: 1.304143699247074e-4
allele num: 115018
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*49dupT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*123dupT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*123dupT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*123dupT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*264dupT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.578dupT
  hgvsp: ENSP00000346492.4:p.Leu193PhefsTer12
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*123dupT
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*123dupT
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20059
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26123
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4924
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu193PhefsTer12
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

11-63525788-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525788
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525788
    reference: chr 11
allele count: 1
allele frequency: 8.724328662909389e-6
allele num: 114622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*256T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*115T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*115T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*115T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.570T>C
  hgvsp: ENST00000354497.4:c.570T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*41T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*115T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*115T>C
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala190Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

11-63525796-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525796
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525796
    reference: chr 11
allele count: 1
allele frequency: 8.715812226541391e-6
allele num: 114734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*123T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*264T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*123T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*49T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*123T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*123T>A
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.578T>A
  hgvsp: ENSP00000346492.4:p.Leu193Ter
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*123T>A
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21683
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45050
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5816
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5181
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu193Ter
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-63525810-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525810
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525810
    reference: chr 11
allele count: 5
allele frequency: 4.831851565519907e-5
allele num: 103480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*137C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*278C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*63C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*137C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.592C>G
  hgvsp: ENSP00000346492.4:p.Leu198Val
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*137C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*137C>G
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*137C>G
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20428
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu198Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

11-63525810-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525810
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525810
    reference: chr 11
allele count: 2
allele frequency: 1.932740626207963e-5
allele num: 103480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*137C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*63C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*137C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*278C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.592C>T
  hgvsp: ENSP00000346492.4:p.Leu198Phe
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*137C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7952
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14786
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu198Phe
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

11-63525811-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525811
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525811
    reference: chr 11
allele count: 1
allele frequency: 1.006927662316739e-5
allele num: 99312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*138T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*138T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*138T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*138T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.593T>C
  hgvsp: ENSP00000346492.4:p.Leu198Pro
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*138T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*279T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*64T>C
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17749
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu198Pro
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-63525819-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525819
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525819
    reference: chr 11
allele count: 1
allele frequency: 1.055386693684566e-5
allele num: 94752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*146T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.601T>C
  hgvsp: ENSP00000346492.4:p.Phe201Leu
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*287T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*146T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*146T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*146T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*146T>C
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*72T>C
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17542
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe201Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-63525824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525824
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525824
    reference: chr 11
allele count: 1
allele frequency: 1.11954501690513e-5
allele num: 89322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*151C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*151C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*151C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*77C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*292C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.606C>T
  hgvsp: ENST00000354497.4:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*151C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*151C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24795
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro202Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

11-63525831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 63525831
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 63525831
    reference: chr 11
allele count: 2
allele frequency: 2.411323575510598e-5
allele num: 82942
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000367050
  ensembl transcript: ENST00000377819
  gene symbol: RTN3
  hgvsc: ENST00000377819.5:c.*158C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440960
  ensembl transcript: ENST00000536011
  gene symbol: RTN3
  hgvsc: ENST00000536011.1:c.*299C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000442733
  ensembl transcript: ENST00000540798
  gene symbol: RTN3
  hgvsc: ENST00000540798.1:c.*158C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000440874
  ensembl transcript: ENST00000537981
  gene symbol: RTN3
  hgvsc: ENST00000537981.1:c.*158C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000340903
  ensembl transcript: ENST00000341307
  gene symbol: RTN3
  hgvsc: ENST00000341307.2:c.*84C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000348279
  ensembl transcript: ENST00000356000
  gene symbol: RTN3
  hgvsc: ENST00000356000.3:c.*158C>T
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000346492
  ensembl transcript: ENST00000354497
  gene symbol: RTN3
  hgvsc: ENST00000354497.4:c.613C>T
  hgvsp: ENSP00000346492.4:p.Pro205Ser
  variant of: http://identifiers.org/hgnc/10469
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000133318
  ensembl protein: ENSP00000344106
  ensembl transcript: ENST00000339997
  gene symbol: RTN3
  hgvsc: ENST00000339997.4:c.*158C>T
  variant of: http://identifiers.org/hgnc/10469
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12658
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro205Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2925
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5094
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39795
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 8.25e1
variant carriers: 0

East Asian
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African
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Other
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European (Non-Finnish)
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allele frequency: 1.498531439189594e-5
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Latino
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South Asian
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European (Finnish)
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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QD
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ReadPosRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66732
num of homozygotes: 0

East Asian
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African
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South Asian
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Other
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European (Finnish)
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FS
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DP
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ReadPosRankSum
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MQ
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Latino
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African
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Other
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East Asian
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South Asian
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ClippingRankSum
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QD
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MQ
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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Other
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East Asian
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Latino
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European (Finnish)
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ClippingRankSum
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Latino
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South Asian
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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DP
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FS
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66692
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Latino
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East Asian
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South Asian
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African
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Other
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European (Finnish)
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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African
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ClippingRankSum
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FS
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VQSLOD
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MQ
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MQRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 5.937234944868533e-4
allele num: 11790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 8.19699006524804e-4
allele num: 60998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.239297813366184e-4
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.222493887530562e-3
allele num: 818
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.097e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

DP
type: SiteQuality
SIO_000300: 1.185636e6

QD
type: SiteQuality
SIO_000300: 1.244e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11970
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.954154727793696e-5
allele num: 11168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61168
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.719e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 4.191e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.43e-1

DP
type: SiteQuality
SIO_000300: 1.204045e6

QD
type: SiteQuality
SIO_000300: 1.74e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.536570374923171e-4
allele num: 6508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11980
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.28e0

DP
type: SiteQuality
SIO_000300: 1.209523e6

MQ
type: SiteQuality
SIO_000300: 5.861e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.053e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.248e0

FS
type: SiteQuality
SIO_000300: 5.283e0

VQSLOD
type: SiteQuality
SIO_000300: -2.132e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.04777870913663e-4
allele num: 9544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.306e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.2e1

MQ
type: SiteQuality
SIO_000300: 6.042e1

MQRankSum
type: SiteQuality
SIO_000300: -1.897e0

DP
type: SiteQuality
SIO_000300: 1.236602e6

GenotypeQuality
all individuals: 464
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 417
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3970
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GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.496878901373283e-4
allele num: 8010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.892846658185733e-5
allele num: 61314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12118
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.38e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

FS
type: SiteQuality
SIO_000300: 9.189e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.541e1

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

DP
type: SiteQuality
SIO_000300: 1.243781e6

GenotypeQuality
all individuals: 2144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 415
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GenotypeQuality
all individuals: 339
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variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.623798389191998e-5
allele num: 61584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 2.38e0

VQSLOD
type: SiteQuality
SIO_000300: 2.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

DP
type: SiteQuality
SIO_000300: 1.266949e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2023
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GenotypeQuality
all individuals: 304
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616135496800052e-5
allele num: 61876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.526e1

DP
type: SiteQuality
SIO_000300: 1.299312e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 7.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.96e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 523

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 990
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 1

South Asian
type: Population
allele count: 175
allele frequency: 1.377518891687657e-2
allele num: 12704
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.848406490400155e-5
allele num: 61876
num of homozygotes: 0

African
type: Population
allele count: 352
allele frequency: 3.632610939112487e-2
allele num: 9690
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.235177865612648e-4
allele num: 8096
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.333807576027032e-3
allele num: 11246
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.375296912114014e-3
allele num: 842
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.526e1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.96e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

FS
type: SiteQuality
SIO_000300: 7.0e-1

DP
type: SiteQuality
SIO_000300: 1.299312e6

GenotypeQuality
all individuals: 1495
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 432
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GenotypeQuality
all individuals: 1061
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

African
type: Population
allele count: 136
allele frequency: 1.389740445534437e-2
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.310674455655868e-4
allele num: 11298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

DP
type: SiteQuality
SIO_000300: 1.330037e6

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

QD
type: SiteQuality
SIO_000300: 1.5e1

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
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variant carriers: 0

GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 1198
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GenotypeQuality
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GenotypeQuality
all individuals: 519
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 4874
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GenotypeQuality
all individuals: 207
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GenotypeQuality
all individuals: 1070
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GenotypeQuality
all individuals: 407
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GenotypeQuality
all individuals: 1404
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599130073240157e-5
allele num: 62534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13322
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

QD
type: SiteQuality
SIO_000300: 1.083e1

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 1.335006e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.549882218119309e-5
allele num: 62828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13642
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.826125330979699e-5
allele num: 11330
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.047e1

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.364e0

DP
type: SiteQuality
SIO_000300: 1.351124e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587553579933323e-5
allele num: 62990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.38e-1

DP
type: SiteQuality
SIO_000300: 1.358252e6

FS
type: SiteQuality
SIO_000300: 8.499000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.95e-1

QD
type: SiteQuality
SIO_000300: 1.115e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587553579933323e-5
allele num: 62990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13828
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 8.499000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -3.352e-1

DP
type: SiteQuality
SIO_000300: 1.358252e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.95e-1

QD
type: SiteQuality
SIO_000300: 1.115e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.38e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14360
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.007252215954875e-4
allele num: 9928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.380307e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

VQSLOD
type: SiteQuality
SIO_000300: 3.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555839064007219e-5
allele num: 64274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.26e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.201e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

DP
type: SiteQuality
SIO_000300: 1.406158e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.981847197287054e-4
allele num: 10026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64274
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.201e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.579813133307015e-5
allele num: 15198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-2

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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DP
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.736676568233443e-5
allele num: 11446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64496
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54832316601121e-5
allele num: 64586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.52e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.77e-1

FS
type: SiteQuality
SIO_000300: 3.798e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

QD
type: SiteQuality
SIO_000300: 1.412e1

DP
type: SiteQuality
SIO_000300: 1.415139e6

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.798157946306095e-5
allele num: 10206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15844
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.107e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.438156e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 7.28e-1

QD
type: SiteQuality
SIO_000300: 1.267e1

GenotypeQuality
all individuals: 221
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 7.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65774
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

MQ
type: SiteQuality
SIO_000300: 5.801e1

QD
type: SiteQuality
SIO_000300: 1.743e1

FS
type: SiteQuality
SIO_000300: 4.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e0

DP
type: SiteQuality
SIO_000300: 1.458724e6

VQSLOD
type: SiteQuality
SIO_000300: -1.873e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

GenotypeQuality
all individuals: 347
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 868
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5915
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51846452866861e-5
allele num: 65856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.230012300123001e-4
allele num: 16260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.724e-1

FS
type: SiteQuality
SIO_000300: 1.086e0

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

QD
type: SiteQuality
SIO_000300: 1.57e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

DP
type: SiteQuality
SIO_000300: 1.462765e6

MQ
type: SiteQuality
SIO_000300: 5.839e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 1511
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variant carriers: 0

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 129
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GenotypeQuality
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GenotypeQuality
all individuals: 868
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variant carriers: 0

GenotypeQuality
all individuals: 246
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variant carriers: 0

GenotypeQuality
all individuals: 47602
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
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variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5915
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51846452866861e-5
allele num: 65856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.57e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.839e1

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

FS
type: SiteQuality
SIO_000300: 1.086e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.724e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 1.462765e6

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
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variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 836
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GenotypeQuality
all individuals: 1497
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variant carriers: 0

GenotypeQuality
all individuals: 386
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variant carriers: 2

GenotypeQuality
all individuals: 5883
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518787400139728e-5
allele num: 65842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.467593e6

FS
type: SiteQuality
SIO_000300: 1.085e0

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.295e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.25e-1

MQ
type: SiteQuality
SIO_000300: 5.818e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
all individuals: 836
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
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GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 1415
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5883
bin: 6.75e1
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GenotypeQuality
all individuals: 1497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.25e1
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GenotypeQuality
all individuals: 723
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.085e0

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.25e-1

MQ
type: SiteQuality
SIO_000300: 5.818e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 1.467593e6

VQSLOD
type: SiteQuality
SIO_000300: -5.295e-1

GenotypeQuality
all individuals: 274
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1077
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
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GenotypeQuality
all individuals: 1011
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4832
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
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GenotypeQuality
all individuals: 1162
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42094
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.7305181494213e-5
allele num: 63418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

QD
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

MQ
type: SiteQuality
SIO_000300: 5.887e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

DP
type: SiteQuality
SIO_000300: 1.608733e6

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 2.5e0
variant carriers: 12

GenotypeQuality
all individuals: 1162
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 890
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
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GenotypeQuality
all individuals: 900
bin: 2.75e1
variant carriers: 13

GenotypeQuality
all individuals: 42094
bin: 6.25e1
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GenotypeQuality
all individuals: 380
bin: 8.25e1
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GenotypeQuality
all individuals: 417
bin: 7.5e0
variant carriers: 12

GenotypeQuality
all individuals: 519
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 274
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1097
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4832
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 4.75e1
variant carriers: 2

Latino
type: Population
allele count: 2
allele frequency: 1.810610175629187e-4
allele num: 11046
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.112469437652812e-4
allele num: 8180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.83831088965278e-4
allele num: 63418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.995205753096284e-4
allele num: 10012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.536029030585796e-4
allele num: 15432
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

FS
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 5.887e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

QD
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

DP
type: SiteQuality
SIO_000300: 1.608733e6

GenotypeQuality
all individuals: 1045
bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 274
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variant carriers: 1

East Asian
type: Population
allele count: 3
allele frequency: 3.667481662591687e-4
allele num: 8180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.626730581222997e-4
allele num: 63418
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.053050878145935e-5
allele num: 11046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.995205753096284e-4
allele num: 10012
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.480041472265422e-5
allele num: 15432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

FS
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.887e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.05e-1

DP
type: SiteQuality
SIO_000300: 1.608733e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.506931886678722e-4
allele num: 66360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

MQ
type: SiteQuality
SIO_000300: 5.837e1

DP
type: SiteQuality
SIO_000300: 1.519618e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
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SIO_000300: 1.133e1

FS
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.423e0

MQRankSum
type: SiteQuality
SIO_000300: 9.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.823e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.939e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.113e1

MQ
type: SiteQuality
SIO_000300: 5.849e1

FS
type: SiteQuality
SIO_000300: 8.888e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.24e-1

DP
type: SiteQuality
SIO_000300: 1.522645e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.523976e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.022e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

QD
type: SiteQuality
SIO_000300: 1.324e1

MQRankSum
type: SiteQuality
SIO_000300: -1.086e0

FS
type: SiteQuality
SIO_000300: 1.146e0

VQSLOD
type: SiteQuality
SIO_000300: -2.014e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.136e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6364
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GenotypeQuality
all individuals: 154
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002552169343942e-5
allele num: 66610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.644e1

DP
type: SiteQuality
SIO_000300: 1.526737e6

GenotypeQuality
all individuals: 125
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 205
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GenotypeQuality
all individuals: 424
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501095799933952e-5
allele num: 66618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.835e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.527903e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314279102059708e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.554e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.829e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 50087
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.803e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

MQ
type: SiteQuality
SIO_000300: 5.882e1

DP
type: SiteQuality
SIO_000300: 1.529506e6

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000300030003e-5
allele num: 66660
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.529506e6

QD
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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East Asian
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Latino
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European (Finnish)
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Other
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FS
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QD
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MQ
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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Other
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Latino
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ClippingRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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DP
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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South Asian
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Other
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European (Non-Finnish)
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FS
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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African
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Other
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European (Non-Finnish)
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FS
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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QD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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South Asian
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Other
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European (Finnish)
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FS
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DP
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ReadPosRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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Other
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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MQ
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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QD
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FS
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ClippingRankSum
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MQRankSum
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SIO_000300: 7.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.530325e6

MQ
type: SiteQuality
SIO_000300: 5.826e1

VQSLOD
type: SiteQuality
SIO_000300: -5.155e-1

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.596503375454388e-4
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.267e1

MQ
type: SiteQuality
SIO_000300: 5.839e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.414e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.530062e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

GenotypeQuality
all individuals: 49850
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
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GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.25e1
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GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 9.75e1
variant carriers: 29

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.35566236106939e-4
allele num: 66580
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

MQ
type: SiteQuality
SIO_000300: 5.766e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.368e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.528269e6

VQSLOD
type: SiteQuality
SIO_000300: -4.688e-1

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6341
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.891e1

DP
type: SiteQuality
SIO_000300: 1.527132e6

VQSLOD
type: SiteQuality
SIO_000300: -5.818e-1

FS
type: SiteQuality
SIO_000300: 4.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.119e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

QD
type: SiteQuality
SIO_000300: 1.037e1

GenotypeQuality
all individuals: 6348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49808
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.108e0

QD
type: SiteQuality
SIO_000300: 1.477e1

DP
type: SiteQuality
SIO_000300: 1.526672e6

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

FS
type: SiteQuality
SIO_000300: 1.152e0

MQ
type: SiteQuality
SIO_000300: 5.346e1

GenotypeQuality
all individuals: 1150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6302
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50779530170984e-5
allele num: 66322
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.658e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e0

FS
type: SiteQuality
SIO_000300: 1.097e0

QD
type: SiteQuality
SIO_000300: 1.047e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.512e0

VQSLOD
type: SiteQuality
SIO_000300: -1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

DP
type: SiteQuality
SIO_000300: 1.519544e6

GenotypeQuality
all individuals: 48709
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 2.790048825854452e-3
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

FS
type: SiteQuality
SIO_000300: 2.145e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

QD
type: SiteQuality
SIO_000300: 1.119e1

VQSLOD
type: SiteQuality
SIO_000300: -1.745e-1

MQ
type: SiteQuality
SIO_000300: 5.549e1

DP
type: SiteQuality
SIO_000300: 1.51596e6

GenotypeQuality
all individuals: 605
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 741
bin: 4.25e1
variant carriers: 13

GenotypeQuality
all individuals: 791
bin: 2.75e1
variant carriers: 19

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 408
bin: 1.75e1
variant carriers: 29

GenotypeQuality
all individuals: 777
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4924
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 413
bin: 7.5e0
variant carriers: 25

GenotypeQuality
all individuals: 804
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 365
bin: 1.25e1
variant carriers: 34

GenotypeQuality
all individuals: 43376
bin: 6.25e1
variant carriers: 3

East Asian
type: Population
allele count: 7
allele frequency: 8.419533317296127e-4
allele num: 8314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 80
allele frequency: 1.271132579128003e-3
allele num: 62936
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.276906238599052e-3
allele num: 10964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.639653572533251e-4
allele num: 6466
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.212972420837589e-3
allele num: 15664
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.12369871402327e-4
allele num: 9798
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

QD
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.498e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 4.727e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

DP
type: SiteQuality
SIO_000300: 1.577488e6

VQSLOD
type: SiteQuality
SIO_000300: -1.088e0

GenotypeQuality
all individuals: 895
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43376
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
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variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
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variant carriers: 1

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588915723910004e-5
allele num: 62936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15664
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.577488e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

MQ
type: SiteQuality
SIO_000300: 5.498e1

QD
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -1.088e0

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

FS
type: SiteQuality
SIO_000300: 4.727e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2894
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 365
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 790
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 804
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43376
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.906698868692004e-4
allele num: 62936
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.384065372829418e-5
allele num: 15664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.405580947798894e-4
allele num: 8314
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQ
type: SiteQuality
SIO_000300: 5.498e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 4.727e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.088e0

QD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.577488e6

GenotypeQuality
all individuals: 438
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4911
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43588
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.110787172011662e-5
allele num: 10976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62686
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: -1.286e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQ
type: SiteQuality
SIO_000300: 5.538e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

DP
type: SiteQuality
SIO_000300: 1.557632e6

QD
type: SiteQuality
SIO_000300: 1.467e1

GenotypeQuality
all individuals: 327
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 337
bin: 3.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
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variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 3.25e1
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GenotypeQuality
all individuals: 202
bin: 4.75e1
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GenotypeQuality
all individuals: 566
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.288517167651868e-5
allele num: 15902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e0

MQ
type: SiteQuality
SIO_000300: 5.572e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
SIO_000300: 1.252e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.15e-1

DP
type: SiteQuality
SIO_000300: 1.427131e6

GenotypeQuality
all individuals: 1197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14786
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4073
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8778
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.357507386516251e-4
allele num: 14892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7544
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.423e0

MQ
type: SiteQuality
SIO_000300: 5.405e1

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.858e0

FS
type: SiteQuality
SIO_000300: 7.523e0

QD
type: SiteQuality
SIO_000300: 1.117e1

DP
type: SiteQuality
SIO_000300: 1.245709e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-2

GenotypeQuality
all individuals: 34624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
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variant carriers: 0

GenotypeQuality
all individuals: 259
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variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4073
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.588602598148281e-5
allele num: 55732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

FS
type: SiteQuality
SIO_000300: 7.523e0

DP
type: SiteQuality
SIO_000300: 1.245709e6

VQSLOD
type: SiteQuality
SIO_000300: -1.423e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.858e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 1.117e1

MQ
type: SiteQuality
SIO_000300: 5.405e1

GenotypeQuality
all individuals: 547
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
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variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29497
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
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variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5772
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.864360241625481e-5
allele num: 14568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53368
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.14e0

MQ
type: SiteQuality
SIO_000300: 5.384e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.185071e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e0

GenotypeQuality
all individuals: 46
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21196
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28070
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.974567569702235e-5
allele num: 50644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.135e0

FS
type: SiteQuality
SIO_000300: 3.144e0

DP
type: SiteQuality
SIO_000300: 1.112804e6

VQSLOD
type: SiteQuality
SIO_000300: -1.813e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.516e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

QD
type: SiteQuality
SIO_000300: 1.287e1

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23765
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variant carriers: 0

GenotypeQuality
all individuals: 620
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variant carriers: 0

GenotypeQuality
all individuals: 408
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variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5366
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.334604664808566e-5
allele num: 13634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.116e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.725e0

MQ
type: SiteQuality
SIO_000300: 5.252e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.03981e6

MQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.161e1