15-48060934-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48060934
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48060934
    reference: chr 15
allele count: 1
allele frequency: 8.3462700519138e-6
allele num: 119814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-1760G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-1760G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-1760G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1804+1644G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1865G>C
  hgvsp: ENSP00000374084.2:p.Gly622Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.312G>C
  hgvsp: ENSP00000453689.1:p.Gly105Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1922G>C
  hgvsp: ENSP00000324857.5:p.Gly641Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1743+122G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-1760G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1922G>C
  hgvsp: ENSP00000446152.2:p.Gly641Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1743+122G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1765+1644G>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly641Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

15-48060942-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48060942
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48060942
    reference: chr 15
allele count: 2
allele frequency: 1.67664269067619e-5
allele num: 119286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1804+1652A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-1752A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1765+1652A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.320A>G
  hgvsp: ENSP00000453689.1:p.Lys108Glu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-1752A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1873A>G
  hgvsp: ENSP00000374084.2:p.Lys625Glu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1930A>G
  hgvsp: ENSP00000446152.2:p.Lys644Glu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-1752A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1743+130A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-1752A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1743+130A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1930A>G
  hgvsp: ENSP00000324857.5:p.Lys644Glu
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys644Glu
num of homozygotes: 1
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

15-48060951-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48060951
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48060951
    reference: chr 15
allele count: 1
allele frequency: 8.443663874628478e-6
allele num: 118432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1876+6G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-1743G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-1743G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1804+1661G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1765+1661G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1933+6G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-1743G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1933+6G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.323+6G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1743+139G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-1743G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1743+139G>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1933+6G>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

15-48060967-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48060967
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48060967
    reference: chr 15
allele count: 5
allele frequency: 4.258943781942078e-5
allele num: 117400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1804+1677C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1876+22C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1933+22C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1765+1677C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-1727C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-1727C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1743+155C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-1727C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1743+155C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-1727C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.323+22C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1933+22C>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

15-48060970-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48060970
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48060970
    reference: chr 15
allele count: 1
allele frequency: 8.54350351992345e-6
allele num: 117048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-1724C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1743+158C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1933+25C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1765+1680C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1804+1680C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-1724C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-1724C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-1724C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.323+25C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1933+25C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1876+25C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1743+158C>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

15-48060979-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48060979
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48060979
    reference: chr 15
allele count: 5
allele frequency: 4.310642113249189e-5
allele num: 115992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-1715C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-1715C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1933+34C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.323+34C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-1715C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1765+1689C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1876+34C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1743+167C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1804+1689C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1933+34C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-1715C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1743+167C>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

15-48060980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48060980
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48060980
    reference: chr 15
allele count: 1
allele frequency: 8.632447644205037e-6
allele num: 115842
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1933+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1876+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-1714G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1743+168G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1765+1690G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-1714G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1933+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.323+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-1714G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1804+1690G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-1714G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1743+168G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

15-48060980-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48060980
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48060980
    reference: chr 15
allele count: 2
allele frequency: 1.726489528841007e-5
allele num: 115842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1743+168G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-1714G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1804+1690G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1876+35G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-1714G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-1714G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1765+1690G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1933+35G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1743+168G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.323+35G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1933+35G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-1714G>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

15-48062644-ATTATTTTTAAAAAGCACC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062644
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062626
    reference: chr 15
allele count: 1
allele frequency: 9.098684330245847e-6
allele num: 109906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 9194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: ATTATTTTTAAAAAGCACC
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS

15-48062654-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062654
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062654
    reference: chr 15
allele count: 4
allele frequency: 3.63411709125268e-5
allele num: 110068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1766-40A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1744-40A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.324-40A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-40A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1805-40A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1744-40A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1934-40A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-40A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-40A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1877-40A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1934-40A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-40A>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10244
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/15-48062660-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062660
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062660
    reference: chr 15
allele count: 1
allele frequency: 9.050920478612675e-6
allele num: 110486
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1934-34A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1766-34A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.324-34A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1744-34A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1744-34A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-34A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1877-34A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-34A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1805-34A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1934-34A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-34A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-34A>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

15-48062664-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062664
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062664
    reference: chr 15
allele count: 1
allele frequency: 9.028041095643067e-6
allele num: 110766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1877-30T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1805-30T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-30T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1766-30T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1934-30T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-30T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-30T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1744-30T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-30T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.324-30T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1934-30T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1744-30T>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

15-48062674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062674
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062674
    reference: chr 15
allele count: 1
allele frequency: 8.974243919949743e-6
allele num: 111430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.324-20G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-20G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-20G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1934-20G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1877-20G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1744-20G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1934-20G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-20G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1805-20G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1766-20G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-20G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1744-20G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

15-48062680-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062680
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062680
    reference: chr 15
allele count: 4
allele frequency: 3.57072717858992e-5
allele num: 112022
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1934-14T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-14T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-14T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.324-14T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1934-14T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1744-14T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1877-14T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-14T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1766-14T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-14T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1744-14T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1805-14T>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS

15-48062683-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062683
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062683
    reference: chr 15
allele count: 1
allele frequency: 8.912973724553461e-6
allele num: 112196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1766-11G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.324-11G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-11G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-11G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1934-11G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1934-11G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1744-11G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1744-11G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-11G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1877-11G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-11G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1805-11G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

15-48062687-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062687
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062687
    reference: chr 15
allele count: 1
allele frequency: 8.887150957146158e-6
allele num: 112522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-7A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1934-7A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1934-7A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1805-7A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1877-7A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.324-7A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1744-7A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-7A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-7A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1766-7A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1744-7A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-7A>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1934-7A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

15-48062689-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062689
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062689
    reference: chr 15
allele count: 1
allele frequency: 8.876580031245562e-6
allele num: 112656
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1709-5T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1748-5T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1805-5T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1748-5T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1877-5T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1934-5T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1934-5T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.324-5T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1766-5T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1744-5T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1748-5T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1744-5T>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1934-5T>C
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

15-48062695-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062695
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062695
    reference: chr 15
allele count: 1
allele frequency: 8.835639435225927e-6
allele num: 113178
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1935T>C
  hgvsp: ENST00000316364.5:c.1935T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1806T>C
  hgvsp: ENST00000389432.2:c.1806T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1710T>C
  hgvsp: ENST00000389428.3:c.1710T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1745T>C
  hgvsp: ENSP00000348276.3:p.Val582Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1749T>C
  hgvsp: ENST00000537942.1:c.1749T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1878T>C
  hgvsp: ENST00000389433.2:c.1878T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1749T>C
  hgvsp: ENST00000558014.1:c.1749T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1745T>C
  hgvsp: ENSP00000453661.1:p.Val582Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1935T>C
  hgvsp: ENST00000536845.2:c.1935T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.325T>C
  hgvsp: ENST00000560006.1:c.325T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1767T>C
  hgvsp: ENST00000354744.4:c.1767T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1749T>C
  hgvsp: ENST00000358066.4:c.1749T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val582Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

15-48062700-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062700
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062700
    reference: chr 15
allele count: 1
allele frequency: 8.769314414999035e-6
allele num: 114034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1772G>A
  hgvsp: ENSP00000346786.4:p.Arg591Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1811G>A
  hgvsp: ENSP00000374083.2:p.Arg604Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1750G>A
  hgvsp: ENSP00000453661.1:p.Asp584Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1754G>A
  hgvsp: ENSP00000442040.1:p.Arg585Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1750G>A
  hgvsp: ENSP00000348276.3:p.Asp584Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1940G>A
  hgvsp: ENSP00000324857.5:p.Arg647Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1883G>A
  hgvsp: ENSP00000374084.2:p.Arg628Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1754G>A
  hgvsp: ENSP00000350770.4:p.Arg585Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1940G>A
  hgvsp: ENSP00000446152.2:p.Arg647Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1754G>A
  hgvsp: ENSP00000452815.1:p.Arg585Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1715G>A
  hgvsp: ENSP00000374079.3:p.Arg572Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.330G>A
  hgvsp: ENSP00000453689.1:p.Arg111Gln
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg647Gln
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

15-48062706-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062706
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062706
    reference: chr 15
allele count: 1
allele frequency: 8.722502311463112e-6
allele num: 114646
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1778A>G
  hgvsp: ENSP00000346786.4:p.Glu593Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.336A>G
  hgvsp: ENSP00000453689.1:p.Glu113Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1946A>G
  hgvsp: ENSP00000324857.5:p.Glu649Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1760A>G
  hgvsp: ENSP00000350770.4:p.Glu587Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1817A>G
  hgvsp: ENSP00000374083.2:p.Glu606Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1889A>G
  hgvsp: ENSP00000374084.2:p.Glu630Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1756A>G
  hgvsp: ENSP00000348276.3:p.Lys586Glu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1721A>G
  hgvsp: ENSP00000374079.3:p.Glu574Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1760A>G
  hgvsp: ENSP00000442040.1:p.Glu587Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1760A>G
  hgvsp: ENSP00000452815.1:p.Glu587Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1946A>G
  hgvsp: ENSP00000446152.2:p.Glu649Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1756A>G
  hgvsp: ENSP00000453661.1:p.Lys586Glu
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu649Gly
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

15-48062741-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062741
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062741
    reference: chr 15
allele count: 1
allele frequency: 8.422187410514259e-6
allele num: 118734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1813A>G
  hgvsp: ENSP00000346786.4:p.Met605Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1795A>G
  hgvsp: ENSP00000442040.1:p.Met599Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1756A>G
  hgvsp: ENSP00000374079.3:p.Met586Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1981A>G
  hgvsp: ENSP00000446152.2:p.Met661Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.1791A>G
  hgvsp: ENST00000355997.3:c.1791A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1924A>G
  hgvsp: ENSP00000374084.2:p.Met642Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1852A>G
  hgvsp: ENSP00000374083.2:p.Met618Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.371A>G
  hgvsp: ENSP00000453689.1:p.Met125Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1795A>G
  hgvsp: ENSP00000350770.4:p.Met599Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.1791A>G
  hgvsp: ENST00000558816.1:c.1791A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1795A>G
  hgvsp: ENSP00000452815.1:p.Met599Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1981A>G
  hgvsp: ENSP00000324857.5:p.Met661Val
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met661Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

15-48062753-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062753
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062753
    reference: chr 15
allele count: 1
allele frequency: 8.343763037129745e-6
allele num: 119850
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.1993A>G
  hgvsp: ENSP00000324857.5:p.Ile665Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1768A>G
  hgvsp: ENSP00000374079.3:p.Ile590Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1807A>G
  hgvsp: ENSP00000442040.1:p.Ile603Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1936A>G
  hgvsp: ENSP00000374084.2:p.Ile646Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.1993A>G
  hgvsp: ENSP00000446152.2:p.Ile665Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1807A>G
  hgvsp: ENSP00000350770.4:p.Ile603Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1864A>G
  hgvsp: ENSP00000374083.2:p.Ile622Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.383A>G
  hgvsp: ENSP00000453689.1:p.Ile129Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1825A>G
  hgvsp: ENSP00000346786.4:p.Ile609Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1807A>G
  hgvsp: ENSP00000452815.1:p.Ile603Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile665Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

15-48062768-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062768
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062768
    reference: chr 15
allele count: 2
allele frequency: 1.655245472903632e-5
allele num: 120828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1879G>T
  hgvsp: ENSP00000374083.2:p.Ala627Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1822G>T
  hgvsp: ENSP00000452815.1:p.Ala608Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2008G>T
  hgvsp: ENSP00000446152.2:p.Ala670Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.398G>T
  hgvsp: ENSP00000453689.1:p.Ala134Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1822G>T
  hgvsp: ENSP00000350770.4:p.Ala608Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1783G>T
  hgvsp: ENSP00000374079.3:p.Ala595Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1822G>T
  hgvsp: ENSP00000442040.1:p.Ala608Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1840G>T
  hgvsp: ENSP00000346786.4:p.Ala614Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1951G>T
  hgvsp: ENSP00000374084.2:p.Ala651Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*24G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2008G>T
  hgvsp: ENSP00000324857.5:p.Ala670Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*24G>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10434
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala670Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

15-48062781-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062781
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062781
    reference: chr 15
allele count: 2
allele frequency: 1.650682557237418e-5
allele num: 121162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1835T>C
  hgvsp: ENSP00000350770.4:p.Leu612Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2021T>C
  hgvsp: ENSP00000446152.2:p.Leu674Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.411T>C
  hgvsp: ENSP00000453689.1:p.Leu138Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1835T>C
  hgvsp: ENSP00000442040.1:p.Leu612Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1964T>C
  hgvsp: ENSP00000374084.2:p.Leu655Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1835T>C
  hgvsp: ENSP00000452815.1:p.Leu612Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2021T>C
  hgvsp: ENSP00000324857.5:p.Leu674Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1853T>C
  hgvsp: ENSP00000346786.4:p.Leu618Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*37T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1892T>C
  hgvsp: ENSP00000374083.2:p.Leu631Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1796T>C
  hgvsp: ENSP00000374079.3:p.Leu599Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*37T>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu674Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/15-48062791-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062791
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062791
    reference: chr 15
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1902C>A
  hgvsp: ENSP00000374083.2:p.Phe634Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1845C>A
  hgvsp: ENSP00000350770.4:p.Phe615Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1845C>A
  hgvsp: ENSP00000452815.1:p.Phe615Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1863C>A
  hgvsp: ENSP00000346786.4:p.Phe621Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.421C>A
  hgvsp: ENSP00000453689.1:p.Phe141Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*47C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1806C>A
  hgvsp: ENSP00000374079.3:p.Phe602Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1974C>A
  hgvsp: ENSP00000374084.2:p.Phe658Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1845C>A
  hgvsp: ENSP00000442040.1:p.Phe615Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2031C>A
  hgvsp: ENSP00000324857.5:p.Phe677Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2031C>A
  hgvsp: ENSP00000446152.2:p.Phe677Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*47C>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10838
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe677Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

15-48062797-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062797
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062797
    reference: chr 15
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.427A>G
  hgvsp: ENST00000560006.1:c.427A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2037A>G
  hgvsp: ENST00000536845.2:c.2037A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1869A>G
  hgvsp: ENST00000354744.4:c.1869A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1851A>G
  hgvsp: ENST00000358066.4:c.1851A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1812A>G
  hgvsp: ENST00000389428.3:c.1812A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1980A>G
  hgvsp: ENST00000389433.2:c.1980A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1851A>G
  hgvsp: ENST00000537942.1:c.1851A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*53A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*53A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1908A>G
  hgvsp: ENST00000389432.2:c.1908A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2037A>G
  hgvsp: ENST00000316364.5:c.2037A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1851A>G
  hgvsp: ENST00000558014.1:c.1851A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala679Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

15-48062797-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062797
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062797
    reference: chr 15
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*53A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1851A>T
  hgvsp: ENST00000537942.1:c.1851A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2037A>T
  hgvsp: ENST00000536845.2:c.2037A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*53A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1908A>T
  hgvsp: ENST00000389432.2:c.1908A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.427A>T
  hgvsp: ENST00000560006.1:c.427A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1851A>T
  hgvsp: ENST00000558014.1:c.1851A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1812A>T
  hgvsp: ENST00000389428.3:c.1812A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2037A>T
  hgvsp: ENST00000316364.5:c.2037A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1869A>T
  hgvsp: ENST00000354744.4:c.1869A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1851A>T
  hgvsp: ENST00000358066.4:c.1851A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1980A>T
  hgvsp: ENST00000389433.2:c.1980A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala679Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

15-48062801-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062801
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062801
    reference: chr 15
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1912G>A
  hgvsp: ENSP00000374083.2:p.Val638Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1855G>A
  hgvsp: ENSP00000442040.1:p.Val619Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2041G>A
  hgvsp: ENSP00000324857.5:p.Val681Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2041G>A
  hgvsp: ENSP00000446152.2:p.Val681Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1855G>A
  hgvsp: ENSP00000350770.4:p.Val619Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*57G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.431G>A
  hgvsp: ENSP00000453689.1:p.Val145Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1855G>A
  hgvsp: ENSP00000452815.1:p.Val619Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1816G>A
  hgvsp: ENSP00000374079.3:p.Val606Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1873G>A
  hgvsp: ENSP00000346786.4:p.Val625Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*57G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1984G>A
  hgvsp: ENSP00000374084.2:p.Val662Met
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val681Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

15-48062807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062807
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062807
    reference: chr 15
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.1990G>A
  hgvsp: ENSP00000374084.2:p.Val664Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2047G>A
  hgvsp: ENSP00000324857.5:p.Val683Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*63G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.437G>A
  hgvsp: ENSP00000453689.1:p.Val147Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1822G>A
  hgvsp: ENSP00000374079.3:p.Val608Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2047G>A
  hgvsp: ENSP00000446152.2:p.Val683Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1918G>A
  hgvsp: ENSP00000374083.2:p.Val640Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1861G>A
  hgvsp: ENSP00000452815.1:p.Val621Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1861G>A
  hgvsp: ENSP00000442040.1:p.Val621Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*63G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1879G>A
  hgvsp: ENSP00000346786.4:p.Val627Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1861G>A
  hgvsp: ENSP00000350770.4:p.Val621Ile
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val683Ile
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

15-48062820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062820
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062820
    reference: chr 15
allele count: 4
allele frequency: 3.298370604921169e-5
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1931G>A
  hgvsp: ENSP00000374083.2:p.Arg644Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.450G>A
  hgvsp: ENSP00000453689.1:p.Arg151Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*76G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1874G>A
  hgvsp: ENSP00000442040.1:p.Arg625Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1835G>A
  hgvsp: ENSP00000374079.3:p.Arg612Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1892G>A
  hgvsp: ENSP00000346786.4:p.Arg631Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2003G>A
  hgvsp: ENSP00000374084.2:p.Arg668Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*76G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1874G>A
  hgvsp: ENSP00000350770.4:p.Arg625Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1874G>A
  hgvsp: ENSP00000452815.1:p.Arg625Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2060G>A
  hgvsp: ENSP00000324857.5:p.Arg687Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2060G>A
  hgvsp: ENSP00000446152.2:p.Arg687Gln
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Arg687Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

15-48062824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062824
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062824
    reference: chr 15
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2007C>T
  hgvsp: ENST00000389433.2:c.2007C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1896C>T
  hgvsp: ENST00000354744.4:c.1896C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1878C>T
  hgvsp: ENST00000558014.1:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1935C>T
  hgvsp: ENST00000389432.2:c.1935C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.454C>T
  hgvsp: ENST00000560006.1:c.454C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*80C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2064C>T
  hgvsp: ENST00000536845.2:c.2064C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1839C>T
  hgvsp: ENST00000389428.3:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1878C>T
  hgvsp: ENST00000358066.4:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2064C>T
  hgvsp: ENST00000316364.5:c.2064C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1878C>T
  hgvsp: ENST00000537942.1:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*80C>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp688Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

15-48062826-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062826
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062826
    reference: chr 15
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2009T>G
  hgvsp: ENSP00000374084.2:p.Met670Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*82T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1880T>G
  hgvsp: ENSP00000350770.4:p.Met627Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.456T>G
  hgvsp: ENSP00000453689.1:p.Met153Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1937T>G
  hgvsp: ENSP00000374083.2:p.Met646Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1880T>G
  hgvsp: ENSP00000442040.1:p.Met627Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*82T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1898T>G
  hgvsp: ENSP00000346786.4:p.Met633Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2066T>G
  hgvsp: ENSP00000324857.5:p.Met689Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2066T>G
  hgvsp: ENSP00000446152.2:p.Met689Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1841T>G
  hgvsp: ENSP00000374079.3:p.Met614Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1880T>G
  hgvsp: ENSP00000452815.1:p.Met627Arg
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met689Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-48062831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062831
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062831
    reference: chr 15
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1885G>A
  hgvsp: ENSP00000452815.1:p.Val629Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1903G>A
  hgvsp: ENSP00000346786.4:p.Val635Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2071G>A
  hgvsp: ENSP00000324857.5:p.Val691Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*87G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1942G>A
  hgvsp: ENSP00000374083.2:p.Val648Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1846G>A
  hgvsp: ENSP00000374079.3:p.Val616Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1885G>A
  hgvsp: ENSP00000350770.4:p.Val629Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2071G>A
  hgvsp: ENSP00000446152.2:p.Val691Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.461G>A
  hgvsp: ENSP00000453689.1:p.Val155Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2014G>A
  hgvsp: ENSP00000374084.2:p.Val672Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1885G>A
  hgvsp: ENSP00000442040.1:p.Val629Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*87G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val691Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

15-48062834-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062834
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062834
    reference: chr 15
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1849C>G
  hgvsp: ENSP00000374079.3:p.Arg617Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1906C>G
  hgvsp: ENSP00000346786.4:p.Arg636Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.464C>G
  hgvsp: ENSP00000453689.1:p.Arg156Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2074C>G
  hgvsp: ENSP00000324857.5:p.Arg692Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2017C>G
  hgvsp: ENSP00000374084.2:p.Arg673Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1888C>G
  hgvsp: ENSP00000442040.1:p.Arg630Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1945C>G
  hgvsp: ENSP00000374083.2:p.Arg649Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*90C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2074C>G
  hgvsp: ENSP00000446152.2:p.Arg692Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1888C>G
  hgvsp: ENSP00000452815.1:p.Arg630Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*90C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1888C>G
  hgvsp: ENSP00000350770.4:p.Arg630Gly
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg692Gly
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-48062834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062834
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062834
    reference: chr 15
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1906C>T
  hgvsp: ENSP00000346786.4:p.Arg636Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*90C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.464C>T
  hgvsp: ENSP00000453689.1:p.Arg156Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*90C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1888C>T
  hgvsp: ENSP00000350770.4:p.Arg630Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2074C>T
  hgvsp: ENSP00000446152.2:p.Arg692Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1945C>T
  hgvsp: ENSP00000374083.2:p.Arg649Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1888C>T
  hgvsp: ENSP00000442040.1:p.Arg630Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1849C>T
  hgvsp: ENSP00000374079.3:p.Arg617Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2074C>T
  hgvsp: ENSP00000324857.5:p.Arg692Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2017C>T
  hgvsp: ENSP00000374084.2:p.Arg673Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1888C>T
  hgvsp: ENSP00000452815.1:p.Arg630Trp
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg692Trp
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

15-48062835-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062835
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062835
    reference: chr 15
allele count: 40
allele frequency: 3.297881111385935e-4
allele num: 121290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1889G>A
  hgvsp: ENSP00000442040.1:p.Arg630Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*91G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.465G>A
  hgvsp: ENSP00000453689.1:p.Arg156Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1889G>A
  hgvsp: ENSP00000350770.4:p.Arg630Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2018G>A
  hgvsp: ENSP00000374084.2:p.Arg673Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1946G>A
  hgvsp: ENSP00000374083.2:p.Arg649Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2075G>A
  hgvsp: ENSP00000446152.2:p.Arg692Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1850G>A
  hgvsp: ENSP00000374079.3:p.Arg617Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1907G>A
  hgvsp: ENSP00000346786.4:p.Arg636Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2075G>A
  hgvsp: ENSP00000324857.5:p.Arg692Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*91G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1889G>A
  hgvsp: ENSP00000452815.1:p.Arg630Gln
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Arg692Gln
num of homozygotes: 1
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

15-48062838-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062838
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062838
    reference: chr 15
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1910A>G
  hgvsp: ENSP00000346786.4:p.Lys637Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1892A>G
  hgvsp: ENSP00000350770.4:p.Lys631Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1892A>G
  hgvsp: ENSP00000452815.1:p.Lys631Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1892A>G
  hgvsp: ENSP00000442040.1:p.Lys631Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2078A>G
  hgvsp: ENSP00000324857.5:p.Lys693Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2021A>G
  hgvsp: ENSP00000374084.2:p.Lys674Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*94A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1853A>G
  hgvsp: ENSP00000374079.3:p.Lys618Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.468A>G
  hgvsp: ENSP00000453689.1:p.Lys157Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2078A>G
  hgvsp: ENSP00000446152.2:p.Lys693Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1949A>G
  hgvsp: ENSP00000374083.2:p.Lys650Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*94A>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys693Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

15-48062843-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062843
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062843
    reference: chr 15
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2083A>G
  hgvsp: ENSP00000446152.2:p.Arg695Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1897A>G
  hgvsp: ENSP00000350770.4:p.Arg633Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1954A>G
  hgvsp: ENSP00000374083.2:p.Arg652Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.473A>G
  hgvsp: ENSP00000453689.1:p.Arg159Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*99A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1897A>G
  hgvsp: ENSP00000452815.1:p.Arg633Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1897A>G
  hgvsp: ENSP00000442040.1:p.Arg633Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*99A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1858A>G
  hgvsp: ENSP00000374079.3:p.Arg620Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1915A>G
  hgvsp: ENSP00000346786.4:p.Arg639Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2026A>G
  hgvsp: ENSP00000374084.2:p.Arg676Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2083A>G
  hgvsp: ENSP00000324857.5:p.Arg695Gly
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg695Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-48062847-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062847
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062847
    reference: chr 15
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1901A>G
  hgvsp: ENSP00000442040.1:p.Lys634Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2087A>G
  hgvsp: ENSP00000446152.2:p.Lys696Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1958A>G
  hgvsp: ENSP00000374083.2:p.Lys653Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2030A>G
  hgvsp: ENSP00000374084.2:p.Lys677Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2087A>G
  hgvsp: ENSP00000324857.5:p.Lys696Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1919A>G
  hgvsp: ENSP00000346786.4:p.Lys640Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*103A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1862A>G
  hgvsp: ENSP00000374079.3:p.Lys621Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1901A>G
  hgvsp: ENSP00000452815.1:p.Lys634Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*103A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1901A>G
  hgvsp: ENSP00000350770.4:p.Lys634Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.477A>G
  hgvsp: ENSP00000453689.1:p.Lys160Arg
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys696Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

15-48062853-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062853
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062853
    reference: chr 15
allele count: 83
allele frequency: 6.844570523815807e-4
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2036A>G
  hgvsp: ENSP00000374084.2:p.His679Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1907A>G
  hgvsp: ENSP00000452815.1:p.His636Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2093A>G
  hgvsp: ENSP00000446152.2:p.His698Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1925A>G
  hgvsp: ENSP00000346786.4:p.His642Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1907A>G
  hgvsp: ENSP00000442040.1:p.His636Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.483A>G
  hgvsp: ENSP00000453689.1:p.His162Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1964A>G
  hgvsp: ENSP00000374083.2:p.His655Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2093A>G
  hgvsp: ENSP00000324857.5:p.His698Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*109A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*109A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1907A>G
  hgvsp: ENSP00000350770.4:p.His636Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1868A>G
  hgvsp: ENSP00000374079.3:p.His623Arg
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.His698Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

15-48062858-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062858
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062858
    reference: chr 15
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2098G>A
  hgvsp: ENSP00000446152.2:p.Asp700Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*114G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.488G>A
  hgvsp: ENSP00000453689.1:p.Asp164Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1912G>A
  hgvsp: ENSP00000452815.1:p.Asp638Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1912G>A
  hgvsp: ENSP00000442040.1:p.Asp638Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2041G>A
  hgvsp: ENSP00000374084.2:p.Asp681Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2098G>A
  hgvsp: ENSP00000324857.5:p.Asp700Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1930G>A
  hgvsp: ENSP00000346786.4:p.Asp644Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1969G>A
  hgvsp: ENSP00000374083.2:p.Asp657Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1912G>A
  hgvsp: ENSP00000350770.4:p.Asp638Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*114G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1873G>A
  hgvsp: ENSP00000374079.3:p.Asp625Asn
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp700Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

15-48062863-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062863
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062863
    reference: chr 15
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2103A>G
  hgvsp: ENST00000536845.2:c.2103A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.493A>G
  hgvsp: ENST00000560006.1:c.493A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1917A>G
  hgvsp: ENST00000537942.1:c.1917A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1917A>G
  hgvsp: ENST00000558014.1:c.1917A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2046A>G
  hgvsp: ENST00000389433.2:c.2046A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1917A>G
  hgvsp: ENST00000358066.4:c.1917A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*119A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1878A>G
  hgvsp: ENST00000389428.3:c.1878A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2103A>G
  hgvsp: ENST00000316364.5:c.2103A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1974A>G
  hgvsp: ENST00000389432.2:c.1974A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*119A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1935A>G
  hgvsp: ENST00000354744.4:c.1935A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala701Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

15-48062869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062869
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062869
    reference: chr 15
allele count: 3
allele frequency: 2.473981956424931e-5
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1884C>T
  hgvsp: ENST00000389428.3:c.1884C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1980C>T
  hgvsp: ENST00000389432.2:c.1980C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*125C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1923C>T
  hgvsp: ENST00000537942.1:c.1923C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1923C>T
  hgvsp: ENST00000558014.1:c.1923C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.499C>T
  hgvsp: ENST00000560006.1:c.499C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1941C>T
  hgvsp: ENST00000354744.4:c.1941C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2109C>T
  hgvsp: ENST00000316364.5:c.2109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2052C>T
  hgvsp: ENST00000389433.2:c.2052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2109C>T
  hgvsp: ENST00000536845.2:c.2109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*125C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1923C>T
  hgvsp: ENST00000358066.4:c.1923C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser703Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

15-48062870-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062870
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062870
    reference: chr 15
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.500G>A
  hgvsp: ENSP00000453689.1:p.Ala168Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2110G>A
  hgvsp: ENSP00000446152.2:p.Ala704Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*126G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1924G>A
  hgvsp: ENSP00000350770.4:p.Ala642Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*126G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1981G>A
  hgvsp: ENSP00000374083.2:p.Ala661Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2110G>A
  hgvsp: ENSP00000324857.5:p.Ala704Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1942G>A
  hgvsp: ENSP00000346786.4:p.Ala648Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1924G>A
  hgvsp: ENSP00000452815.1:p.Ala642Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1924G>A
  hgvsp: ENSP00000442040.1:p.Ala642Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2053G>A
  hgvsp: ENSP00000374084.2:p.Ala685Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1885G>A
  hgvsp: ENSP00000374079.3:p.Ala629Thr
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala704Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

15-48062875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062875
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062875
    reference: chr 15
allele count: 2
allele frequency: 1.649294102124291e-5
allele num: 121264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*131G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2058G>A
  hgvsp: ENST00000389433.2:c.2058G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1929G>A
  hgvsp: ENST00000537942.1:c.1929G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1929G>A
  hgvsp: ENST00000358066.4:c.1929G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1947G>A
  hgvsp: ENST00000354744.4:c.1947G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2115G>A
  hgvsp: ENST00000316364.5:c.2115G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1929G>A
  hgvsp: ENST00000558014.1:c.1929G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1986G>A
  hgvsp: ENST00000389432.2:c.1986G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.505G>A
  hgvsp: ENST00000560006.1:c.505G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2115G>A
  hgvsp: ENST00000536845.2:c.2115G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*131G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1890G>A
  hgvsp: ENST00000389428.3:c.1890G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7025
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln705Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

15-48062879-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062879
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062879
    reference: chr 15
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.509T>C
  hgvsp: ENSP00000453689.1:p.Cys171Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1951T>C
  hgvsp: ENSP00000346786.4:p.Cys651Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2119T>C
  hgvsp: ENSP00000324857.5:p.Cys707Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1933T>C
  hgvsp: ENSP00000350770.4:p.Cys645Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1894T>C
  hgvsp: ENSP00000374079.3:p.Cys632Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2119T>C
  hgvsp: ENSP00000446152.2:p.Cys707Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1933T>C
  hgvsp: ENSP00000452815.1:p.Cys645Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1990T>C
  hgvsp: ENSP00000374083.2:p.Cys664Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*135T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*135T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1933T>C
  hgvsp: ENSP00000442040.1:p.Cys645Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2062T>C
  hgvsp: ENSP00000374084.2:p.Cys688Arg
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10832
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys707Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

15-48062882-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062882
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062882
    reference: chr 15
allele count: 2
allele frequency: 1.649375711293276e-5
allele num: 121258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*138A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*138A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2122A>G
  hgvsp: ENSP00000324857.5:p.Thr708Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.512A>G
  hgvsp: ENSP00000453689.1:p.Thr172Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1897A>G
  hgvsp: ENSP00000374079.3:p.Thr633Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1936A>G
  hgvsp: ENSP00000350770.4:p.Thr646Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1993A>G
  hgvsp: ENSP00000374083.2:p.Thr665Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2065A>G
  hgvsp: ENSP00000374084.2:p.Thr689Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1936A>G
  hgvsp: ENSP00000442040.1:p.Thr646Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1936A>G
  hgvsp: ENSP00000452815.1:p.Thr646Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1954A>G
  hgvsp: ENSP00000346786.4:p.Thr652Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2122A>G
  hgvsp: ENSP00000446152.2:p.Thr708Ala
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr708Ala
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

15-48062883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062883
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062883
    reference: chr 15
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1937C>T
  hgvsp: ENSP00000350770.4:p.Thr646Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.1994C>T
  hgvsp: ENSP00000374083.2:p.Thr665Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2123C>T
  hgvsp: ENSP00000324857.5:p.Thr708Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1937C>T
  hgvsp: ENSP00000452815.1:p.Thr646Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*139C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1937C>T
  hgvsp: ENSP00000442040.1:p.Thr646Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2123C>T
  hgvsp: ENSP00000446152.2:p.Thr708Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.513C>T
  hgvsp: ENSP00000453689.1:p.Thr172Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2066C>T
  hgvsp: ENSP00000374084.2:p.Thr689Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1898C>T
  hgvsp: ENSP00000374079.3:p.Thr633Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1955C>T
  hgvsp: ENSP00000346786.4:p.Thr652Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*139C>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr708Ile
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

15-48062909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062909
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062909
    reference: chr 15
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*165C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1963C>T
  hgvsp: ENST00000558014.1:c.1963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2149C>T
  hgvsp: ENST00000536845.2:c.2149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2149C>T
  hgvsp: ENST00000316364.5:c.2149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*165C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2020C>T
  hgvsp: ENST00000389432.2:c.2020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1963C>T
  hgvsp: ENST00000358066.4:c.1963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1963C>T
  hgvsp: ENST00000537942.1:c.1963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1924C>T
  hgvsp: ENST00000389428.3:c.1924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.539C>T
  hgvsp: ENST00000560006.1:c.539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2092C>T
  hgvsp: ENST00000389433.2:c.2092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1981C>T
  hgvsp: ENST00000354744.4:c.1981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu717Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

15-48062912-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062912
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062912
    reference: chr 15
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*168A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.542A>G
  hgvsp: ENSP00000453689.1:p.Asn182Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2152A>G
  hgvsp: ENSP00000446152.2:p.Asn718Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1966A>G
  hgvsp: ENSP00000442040.1:p.Asn656Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2023A>G
  hgvsp: ENSP00000374083.2:p.Asn675Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1966A>G
  hgvsp: ENSP00000350770.4:p.Asn656Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2152A>G
  hgvsp: ENSP00000324857.5:p.Asn718Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1966A>G
  hgvsp: ENSP00000452815.1:p.Asn656Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*168A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2095A>G
  hgvsp: ENSP00000374084.2:p.Asn699Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1984A>G
  hgvsp: ENSP00000346786.4:p.Asn662Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1927A>G
  hgvsp: ENSP00000374079.3:p.Asn643Asp
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn718Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

15-48062921-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062921
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062921
    reference: chr 15
allele count: 10
allele frequency: 8.254911672445105e-5
allele num: 121140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1975T>C
  hgvsp: ENSP00000350770.4:p.Phe659Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2161T>C
  hgvsp: ENSP00000446152.2:p.Phe721Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2161T>C
  hgvsp: ENSP00000324857.5:p.Phe721Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2104T>C
  hgvsp: ENSP00000374084.2:p.Phe702Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*177T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2032T>C
  hgvsp: ENSP00000374083.2:p.Phe678Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1975T>C
  hgvsp: ENSP00000452815.1:p.Phe659Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1975T>C
  hgvsp: ENSP00000442040.1:p.Phe659Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.551T>C
  hgvsp: ENSP00000453689.1:p.Phe185Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1993T>C
  hgvsp: ENSP00000346786.4:p.Phe665Leu
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*177T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1936T>C
  hgvsp: ENSP00000374079.3:p.Phe646Leu
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10540
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe721Leu
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

15-48062925-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062925
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062925
    reference: chr 15
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1979A>G
  hgvsp: ENSP00000452815.1:p.Asp660Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.1997A>G
  hgvsp: ENSP00000346786.4:p.Asp666Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.555A>G
  hgvsp: ENSP00000453689.1:p.Asp186Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1979A>G
  hgvsp: ENSP00000442040.1:p.Asp660Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*181A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2165A>G
  hgvsp: ENSP00000446152.2:p.Asp722Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2036A>G
  hgvsp: ENSP00000374083.2:p.Asp679Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1940A>G
  hgvsp: ENSP00000374079.3:p.Asp647Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*181A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2165A>G
  hgvsp: ENSP00000324857.5:p.Asp722Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1979A>G
  hgvsp: ENSP00000350770.4:p.Asp660Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2108A>G
  hgvsp: ENSP00000374084.2:p.Asp703Gly
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp722Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD

15-48062928-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062928
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062928
    reference: chr 15
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1982G>T
  hgvsp: ENSP00000452815.1:p.Ser661Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2168G>T
  hgvsp: ENSP00000446152.2:p.Ser723Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.558G>T
  hgvsp: ENSP00000453689.1:p.Ser187Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*184G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1982G>T
  hgvsp: ENSP00000350770.4:p.Ser661Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1943G>T
  hgvsp: ENSP00000374079.3:p.Ser648Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2000G>T
  hgvsp: ENSP00000346786.4:p.Ser667Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*184G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2039G>T
  hgvsp: ENSP00000374083.2:p.Ser680Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2168G>T
  hgvsp: ENSP00000324857.5:p.Ser723Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1982G>T
  hgvsp: ENSP00000442040.1:p.Ser661Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2111G>T
  hgvsp: ENSP00000374084.2:p.Ser704Ile
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser723Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-48062939-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062939
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062939
    reference: chr 15
allele count: 1
allele frequency: 8.264189613566494e-6
allele num: 121004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2179G>A
  hgvsp: ENSP00000446152.2:p.Glu727Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1993G>A
  hgvsp: ENSP00000350770.4:p.Glu665Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1993G>A
  hgvsp: ENSP00000442040.1:p.Glu665Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2050G>A
  hgvsp: ENSP00000374083.2:p.Glu684Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.569G>A
  hgvsp: ENSP00000453689.1:p.Glu191Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2122G>A
  hgvsp: ENSP00000374084.2:p.Glu708Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2179G>A
  hgvsp: ENSP00000324857.5:p.Glu727Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1954G>A
  hgvsp: ENSP00000374079.3:p.Glu652Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2011G>A
  hgvsp: ENSP00000346786.4:p.Glu671Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*195G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1993G>A
  hgvsp: ENSP00000452815.1:p.Glu665Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*195G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu727Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS

15-48062942-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062942
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062942
    reference: chr 15
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.572T>C
  hgvsp: ENSP00000453689.1:p.Tyr192His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1957T>C
  hgvsp: ENSP00000374079.3:p.Tyr653His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2053T>C
  hgvsp: ENSP00000374083.2:p.Tyr685His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*198T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*198T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.1996T>C
  hgvsp: ENSP00000452815.1:p.Tyr666His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2014T>C
  hgvsp: ENSP00000346786.4:p.Tyr672His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2182T>C
  hgvsp: ENSP00000446152.2:p.Tyr728His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2182T>C
  hgvsp: ENSP00000324857.5:p.Tyr728His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2125T>C
  hgvsp: ENSP00000374084.2:p.Tyr709His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.1996T>C
  hgvsp: ENSP00000350770.4:p.Tyr666His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.1996T>C
  hgvsp: ENSP00000442040.1:p.Tyr666His
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr728His
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

15-48062951-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062951
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062951
    reference: chr 15
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*207A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2005A>G
  hgvsp: ENSP00000452815.1:p.Asn669Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2062A>G
  hgvsp: ENSP00000374083.2:p.Asn688Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2191A>G
  hgvsp: ENSP00000446152.2:p.Asn731Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1966A>G
  hgvsp: ENSP00000374079.3:p.Asn656Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2023A>G
  hgvsp: ENSP00000346786.4:p.Asn675Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.581A>G
  hgvsp: ENSP00000453689.1:p.Asn195Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2005A>G
  hgvsp: ENSP00000442040.1:p.Asn669Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2191A>G
  hgvsp: ENSP00000324857.5:p.Asn731Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*207A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2134A>G
  hgvsp: ENSP00000374084.2:p.Asn712Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2005A>G
  hgvsp: ENSP00000350770.4:p.Asn669Asp
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn731Asp
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-48062953-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062953
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062953
    reference: chr 15
allele count: 1
allele frequency: 8.269246671628215e-6
allele num: 120930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2136T>A
  hgvsp: ENSP00000374084.2:p.Asn712Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2007T>A
  hgvsp: ENSP00000442040.1:p.Asn669Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2025T>A
  hgvsp: ENSP00000346786.4:p.Asn675Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.583T>A
  hgvsp: ENSP00000453689.1:p.Asn195Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2193T>A
  hgvsp: ENSP00000324857.5:p.Asn731Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2007T>A
  hgvsp: ENSP00000350770.4:p.Asn669Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1968T>A
  hgvsp: ENSP00000374079.3:p.Asn656Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2193T>A
  hgvsp: ENSP00000446152.2:p.Asn731Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2064T>A
  hgvsp: ENSP00000374083.2:p.Asn688Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*209T>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2007T>A
  hgvsp: ENSP00000452815.1:p.Asn669Lys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*209T>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10925
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn731Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

15-48062955-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062955
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062955
    reference: chr 15
allele count: 1
allele frequency: 8.270614506657845e-6
allele num: 120910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2138T>A
  hgvsp: ENSP00000374084.2:p.Ile713Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*211T>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.585T>A
  hgvsp: ENSP00000453689.1:p.Ile196Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2009T>A
  hgvsp: ENSP00000452815.1:p.Ile670Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2066T>A
  hgvsp: ENSP00000374083.2:p.Ile689Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2009T>A
  hgvsp: ENSP00000442040.1:p.Ile670Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2009T>A
  hgvsp: ENSP00000350770.4:p.Ile670Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2195T>A
  hgvsp: ENSP00000324857.5:p.Ile732Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*211T>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1970T>A
  hgvsp: ENSP00000374079.3:p.Ile657Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2027T>A
  hgvsp: ENSP00000346786.4:p.Ile676Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2195T>A
  hgvsp: ENSP00000446152.2:p.Ile732Asn
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile732Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

15-48062955-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062955
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062955
    reference: chr 15
allele count: 2
allele frequency: 1.654122901331569e-5
allele num: 120910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2027T>C
  hgvsp: ENSP00000346786.4:p.Ile676Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453689
  ensembl transcript: ENST00000560006
  gene symbol: SEMA6D
  hgvsc: ENST00000560006.1:c.585T>C
  hgvsp: ENSP00000453689.1:p.Ile196Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2009T>C
  hgvsp: ENSP00000442040.1:p.Ile670Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*211T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2195T>C
  hgvsp: ENSP00000324857.5:p.Ile732Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2066T>C
  hgvsp: ENSP00000374083.2:p.Ile689Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2138T>C
  hgvsp: ENSP00000374084.2:p.Ile713Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*211T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2009T>C
  hgvsp: ENSP00000350770.4:p.Ile670Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2195T>C
  hgvsp: ENSP00000446152.2:p.Ile732Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1970T>C
  hgvsp: ENSP00000374079.3:p.Ile657Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2009T>C
  hgvsp: ENSP00000452815.1:p.Ile670Thr
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile732Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

15-48062963-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062963
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062963
    reference: chr 15
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2017C>G
  hgvsp: ENSP00000442040.1:p.Pro673Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2203C>G
  hgvsp: ENSP00000446152.2:p.Pro735Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2017C>G
  hgvsp: ENSP00000350770.4:p.Pro673Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2203C>G
  hgvsp: ENSP00000324857.5:p.Pro735Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2074C>G
  hgvsp: ENSP00000374083.2:p.Pro692Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2017C>G
  hgvsp: ENSP00000452815.1:p.Pro673Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2035C>G
  hgvsp: ENSP00000346786.4:p.Pro679Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*219C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*219C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2146C>G
  hgvsp: ENSP00000374084.2:p.Pro716Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1978C>G
  hgvsp: ENSP00000374079.3:p.Pro660Ala
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro735Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

15-48062970-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062970
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062970
    reference: chr 15
allele count: 4
allele frequency: 3.311039004039468e-5
allele num: 120808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2081T>C
  hgvsp: ENSP00000374083.2:p.Leu694Pro
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*226T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2042T>C
  hgvsp: ENSP00000346786.4:p.Leu681Pro
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2153T>C
  hgvsp: ENSP00000374084.2:p.Leu718Pro
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2210T>C
  hgvsp: ENSP00000324857.5:p.Leu737Pro
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2210T>C
  hgvsp: ENSP00000446152.2:p.Leu737Pro
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2024T>C
  hgvsp: ENSP00000442040.1:p.Leu675Pro
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2024T>C
  hgvsp: ENSP00000350770.4:p.Leu675Pro
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1985T>C
  hgvsp: ENSP00000374079.3:p.Leu662Pro
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2024T>C
  hgvsp: ENSP00000452815.1:p.Leu675Pro
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*226T>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Leu737Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

15-48062972-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062972
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062972
    reference: chr 15
allele count: 4
allele frequency: 3.311532411623479e-5
allele num: 120790
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2026T>C
  hgvsp: ENSP00000350770.4:p.Tyr676His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2083T>C
  hgvsp: ENSP00000374083.2:p.Tyr695His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1987T>C
  hgvsp: ENSP00000374079.3:p.Tyr663His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*228T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2026T>C
  hgvsp: ENSP00000442040.1:p.Tyr676His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2044T>C
  hgvsp: ENSP00000346786.4:p.Tyr682His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2155T>C
  hgvsp: ENSP00000374084.2:p.Tyr719His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2212T>C
  hgvsp: ENSP00000446152.2:p.Tyr738His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2212T>C
  hgvsp: ENSP00000324857.5:p.Tyr738His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*228T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2026T>C
  hgvsp: ENSP00000452815.1:p.Tyr676His
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr738His
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

15-48062973-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062973
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062973
    reference: chr 15
allele count: 4
allele frequency: 3.311039004039468e-5
allele num: 120808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2027A>G
  hgvsp: ENSP00000442040.1:p.Tyr676Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2213A>G
  hgvsp: ENSP00000324857.5:p.Tyr738Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2027A>G
  hgvsp: ENSP00000350770.4:p.Tyr676Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2084A>G
  hgvsp: ENSP00000374083.2:p.Tyr695Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2027A>G
  hgvsp: ENSP00000452815.1:p.Tyr676Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2045A>G
  hgvsp: ENSP00000346786.4:p.Tyr682Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2213A>G
  hgvsp: ENSP00000446152.2:p.Tyr738Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*229A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2156A>G
  hgvsp: ENSP00000374084.2:p.Tyr719Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1988A>G
  hgvsp: ENSP00000374079.3:p.Tyr663Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*229A>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr738Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

15-48062975-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062975
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062975
    reference: chr 15
allele count: 2
allele frequency: 1.655903295247558e-5
allele num: 120780
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2047A>G
  hgvsp: ENSP00000346786.4:p.Ser683Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2086A>G
  hgvsp: ENSP00000374083.2:p.Ser696Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2029A>G
  hgvsp: ENSP00000350770.4:p.Ser677Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2029A>G
  hgvsp: ENSP00000452815.1:p.Ser677Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2158A>G
  hgvsp: ENSP00000374084.2:p.Ser720Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2215A>G
  hgvsp: ENSP00000324857.5:p.Ser739Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2029A>G
  hgvsp: ENSP00000442040.1:p.Ser677Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*231A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2215A>G
  hgvsp: ENSP00000446152.2:p.Ser739Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.1990A>G
  hgvsp: ENSP00000374079.3:p.Ser664Gly
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*231A>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10904
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser739Gly
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

15-48062993-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062993
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062993
    reference: chr 15
allele count: 3
allele frequency: 2.485665992774998e-5
allele num: 120692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2047C>T
  hgvsp: ENSP00000350770.4:p.Arg683Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2176C>T
  hgvsp: ENSP00000374084.2:p.Arg726Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2065C>T
  hgvsp: ENSP00000346786.4:p.Arg689Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2233C>T
  hgvsp: ENSP00000324857.5:p.Arg745Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2104C>T
  hgvsp: ENSP00000374083.2:p.Arg702Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2047C>T
  hgvsp: ENSP00000442040.1:p.Arg683Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.2008C>T
  hgvsp: ENSP00000374079.3:p.Arg670Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*249C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*249C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2233C>T
  hgvsp: ENSP00000446152.2:p.Arg745Trp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2047C>T
  hgvsp: ENSP00000452815.1:p.Arg683Trp
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg745Trp
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-48062994-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062994
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062994
    reference: chr 15
allele count: 13
allele frequency: 1.077264741953661e-4
allele num: 120676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.2009G>A
  hgvsp: ENSP00000374079.3:p.Arg670Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2048G>A
  hgvsp: ENSP00000442040.1:p.Arg683Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2066G>A
  hgvsp: ENSP00000346786.4:p.Arg689Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2048G>A
  hgvsp: ENSP00000350770.4:p.Arg683Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2048G>A
  hgvsp: ENSP00000452815.1:p.Arg683Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*250G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2177G>A
  hgvsp: ENSP00000374084.2:p.Arg726Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2105G>A
  hgvsp: ENSP00000374083.2:p.Arg702Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2234G>A
  hgvsp: ENSP00000446152.2:p.Arg745Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2234G>A
  hgvsp: ENSP00000324857.5:p.Arg745Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*250G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg745Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

15-48062995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48062995
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48062995
    reference: chr 15
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.2178G>A
  hgvsp: ENST00000389433.2:c.2178G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.2049G>A
  hgvsp: ENST00000537942.1:c.2049G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.2067G>A
  hgvsp: ENST00000354744.4:c.2067G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.2010G>A
  hgvsp: ENST00000389428.3:c.2010G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.2235G>A
  hgvsp: ENST00000536845.2:c.2235G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.*251G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.2049G>A
  hgvsp: ENST00000358066.4:c.2049G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.2049G>A
  hgvsp: ENST00000558014.1:c.2049G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.2235G>A
  hgvsp: ENST00000316364.5:c.2235G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.2106G>A
  hgvsp: ENST00000389432.2:c.2106G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.*251G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg745Arg
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 103
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32823
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4450
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.435834727764191e-5
allele num: 15538
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.326e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

FS
type: SiteQuality
SIO_000300: 5.425e0

DP
type: SiteQuality
SIO_000300: 1.55463e6

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

QD
type: SiteQuality
SIO_000300: 1.357e1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e-1

GenotypeDepth
all individuals: 575
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4450
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4226
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3097
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32084
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.317523056653491e-4
allele num: 15180
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66118
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.789999999999999e0

FS
type: SiteQuality
SIO_000300: 4.238e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.72e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.709e0

DP
type: SiteQuality
SIO_000300: 1.54431e6

QD
type: SiteQuality
SIO_000300: 2.051e1

GenotypeDepth
all individuals: 103
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2076
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3084
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4450
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517450682852807e-5
allele num: 65900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.686e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.213e0

MQRankSum
type: SiteQuality
SIO_000300: 3.74e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

DP
type: SiteQuality
SIO_000300: 1.52825e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
all individuals: 3057
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4453
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7463
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.623113279463333e-5
allele num: 65590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13938
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.252e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.966e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 1.36e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

DP
type: SiteQuality
SIO_000300: 1.50995e6

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3411
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3097
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4452
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526437904506045e-5
allele num: 65512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.786e0

DP
type: SiteQuality
SIO_000300: 1.505435e6

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 2.583e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeDepth
all individuals: 237
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3094
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4456
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4206
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12936
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.17096018735363e-3
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.063631628932937e-5
allele num: 65282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 7.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.497996e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeDepth
all individuals: 65
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28841
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4458
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3093
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4204
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3061
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65242
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.892e0

FS
type: SiteQuality
SIO_000300: 3.524e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.496353e6

QD
type: SiteQuality
SIO_000300: 1.435e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeDepth
all individuals: 579
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4204
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4458
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3093
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28841
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.74089226573154e-5
allele num: 10266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53275497378989e-5
allele num: 65242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 3.524e0

DP
type: SiteQuality
SIO_000300: 1.496353e6

MQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.892e0

QD
type: SiteQuality
SIO_000300: 1.435e1

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4239
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27536
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.091464745688714e-4
allele num: 9162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: -5.513e0

VQSLOD
type: SiteQuality
SIO_000300: -1.775e0

DP
type: SiteQuality
SIO_000300: 2.10362e6

MQ
type: SiteQuality
SIO_000300: 5.138e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2363
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4079
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27636
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4020
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63876
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.355400696864111e-4
allele num: 9184
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.525e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

MQRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

DP
type: SiteQuality
SIO_000300: 2.122083e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3692
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27658
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2559
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563086157308991e-5
allele num: 63976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.449e1

MQRankSum
type: SiteQuality
SIO_000300: -4.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.46e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.906e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.02e-1

DP
type: SiteQuality
SIO_000300: 2.136123e6

GenotypeDepth
all individuals: 10398
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4053
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27666
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3699
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560890331845285e-5
allele num: 64066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 2.141406e6

MQRankSum
type: SiteQuality
SIO_000300: -1.498e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.668e1

VQSLOD
type: SiteQuality
SIO_000300: -7.442e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.54e-1

GenotypeDepth
all individuals: 3851
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3572
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3740
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4057
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27670
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7230
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64222
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.237623762376238e-3
allele num: 808
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.150712e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 2.222e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.672e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.25e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: -2.743e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeDepth
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4056
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3711
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3756
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27673
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64380
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.006410256410256e-4
allele num: 9984
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.862e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

QD
type: SiteQuality
SIO_000300: 2.237e1

DP
type: SiteQuality
SIO_000300: 2.155365e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.65e0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

FS
type: SiteQuality
SIO_000300: 7.557e0

GenotypeDepth
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3730
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4056
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27673
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2392
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.727526618956188e-5
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.156958e6

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.85e-1

FS
type: SiteQuality
SIO_000300: 2.222e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.197e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.335e1

VQSLOD
type: SiteQuality
SIO_000300: 4.52e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.07e-1

GenotypeDepth
all individuals: 685
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 291
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1582
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3765
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3813
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4056
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

VQSLOD
type: SiteQuality
SIO_000300: -5.142e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 1.676e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e0

MQ
type: SiteQuality
SIO_000300: 5.898e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.459e1

DP
type: SiteQuality
SIO_000300: 2.159576e6

GenotypeDepth
all individuals: 629
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 982
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7006
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 351
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27675
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4056
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7520
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3732
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549090683768628e-5
allele num: 64554
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.242e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 1.051e0

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

DP
type: SiteQuality
SIO_000300: 2.16065e6

GenotypeDepth
all individuals: 982
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7006
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 685
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1582
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2608
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 629
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27675
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 324
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7614
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4055
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546168594223514e-5
allele num: 64676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.407e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

DP
type: SiteQuality
SIO_000300: 2.164711e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 3.251e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeDepth
all individuals: 485
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 982
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9354
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2608
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3369
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27676
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4055
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541639687972127e-5
allele num: 64866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.125e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.442e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.54e-1

FS
type: SiteQuality
SIO_000300: 6.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 2.170191e6

MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

GenotypeDepth
all individuals: 10434
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4462
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2609
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9352
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4055
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3171
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27677
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4141
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65024
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.345e1

VQSLOD
type: SiteQuality
SIO_000300: -1.657e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.206e0

FS
type: SiteQuality
SIO_000300: 7.3e-1

DP
type: SiteQuality
SIO_000300: 2.174725e6

GenotypeDepth
all individuals: 629
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9358
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9701
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4055
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27678
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514142087093453e-5
allele num: 66044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.523e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.210386e6

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.582e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.467e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.09e-1

QD
type: SiteQuality
SIO_000300: 1.005e1

GenotypeDepth
all individuals: 4463
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2609
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4067
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27683
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507295309296997e-5
allele num: 66344
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 6.830000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

DP
type: SiteQuality
SIO_000300: 2.223795e6

VQSLOD
type: SiteQuality
SIO_000300: -9.021e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeDepth
all individuals: 629
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10256
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 292
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4344
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4077
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27692
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10913
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314814814814815e-4
allele num: 8640
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.777e0

QD
type: SiteQuality
SIO_000300: 1.183e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 2.23739e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.936e0

GenotypeDepth
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 983
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4037
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11096
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27700
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4393
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.317e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.24229e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.363e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 1.1032e1

QD
type: SiteQuality
SIO_000300: 1.132e1

GenotypeDepth
all individuals: 2610
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1583
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10408
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27700
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4045
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4393
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4287
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.701e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.26e0

VQSLOD
type: SiteQuality
SIO_000300: -2.151e0

FS
type: SiteQuality
SIO_000300: 5.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.005e1

MQ
type: SiteQuality
SIO_000300: 5.762e1

DP
type: SiteQuality
SIO_000300: 2.243407e6

GenotypeDepth
all individuals: 983
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 352
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7019
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27703
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4047
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

FS
type: SiteQuality
SIO_000300: 5.665e0

DP
type: SiteQuality
SIO_000300: 2.243783e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeDepth
all individuals: 628
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10838
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27703
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 5.665e0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

DP
type: SiteQuality
SIO_000300: 2.243783e6

GenotypeDepth
all individuals: 353
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1583
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27704
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.726e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 8.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.849e0

QD
type: SiteQuality
SIO_000300: 1.024e1

MQRankSum
type: SiteQuality
SIO_000300: -4.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

DP
type: SiteQuality
SIO_000300: 2.243755e6

GenotypeDepth
all individuals: 10504
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11158
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4039
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27705
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4286
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.619e0

VQSLOD
type: SiteQuality
SIO_000300: 8.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.622e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.243968e6

QD
type: SiteQuality
SIO_000300: 1.415e1

GenotypeDepth
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 294
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4407
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27707
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.600104004160167e-4
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

QD
type: SiteQuality
SIO_000300: 1.547e1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 2.244502e6

GenotypeDepth
all individuals: 982
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10830
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4464
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27707
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4409
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 8.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.395e0

QD
type: SiteQuality
SIO_000300: 1.568e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e-1

DP
type: SiteQuality
SIO_000300: 2.244288e6

GenotypeDepth
all individuals: 630
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10828
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4410
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27708
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4037
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

QD
type: SiteQuality
SIO_000300: 1.655e1

FS
type: SiteQuality
SIO_000300: 7.211e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

DP
type: SiteQuality
SIO_000300: 2.244338e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

GenotypeDepth
all individuals: 629
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1581
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4465
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4408
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4037
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27708
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 2.244328e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.688e0

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

QD
type: SiteQuality
SIO_000300: 1.349e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 2.294e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

GenotypeDepth
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 983
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2610
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27709
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

DP
type: SiteQuality
SIO_000300: 2.244476e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

GenotypeDepth
all individuals: 983
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 353
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2610
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27709
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.244476e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4461
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1581
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4285
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4034
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27730
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 28
allele frequency: 3.243744207599629e-3
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.672328035909256e-4
allele num: 16486
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 2.247003e6

QD
type: SiteQuality
SIO_000300: 1.337e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.96e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

GenotypeDepth
all individuals: 691
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7019
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27722
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11117
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.24529e6

FS
type: SiteQuality
SIO_000300: 6.879999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: -1.664e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.725e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.341e0

QD
type: SiteQuality
SIO_000300: 1.485e1

GenotypeDepth
all individuals: 1580
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 488
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4410
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4285
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27723
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4034
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.306e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.74e-1

DP
type: SiteQuality
SIO_000300: 2.245274e6

FS
type: SiteQuality
SIO_000300: 2.385e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: 5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.079e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
all individuals: 2612
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 296
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10830
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27723
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.24517e6

FS
type: SiteQuality
SIO_000300: 1.308e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

QD
type: SiteQuality
SIO_000300: 1.471e1

MQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
all individuals: 696
bin: 6.75e1
variant carriers: 4

GenotypeDepth
all individuals: 10447
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 674
bin: 9.75e1
variant carriers: 41

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27779
bin: 9.75e1
variant carriers: 83

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4278
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2395
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4032
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4076
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 55
allele frequency: 3.337378640776699e-3
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 3.748238327985847e-4
allele num: 66698
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 5.37e0

QD
type: SiteQuality
SIO_000300: 1.349e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.250185e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

GenotypeDepth
all individuals: 4467
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 640
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27761
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2424
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4079
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.441e0

FS
type: SiteQuality
SIO_000300: 2.614e0

QD
type: SiteQuality
SIO_000300: 1.21e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

DP
type: SiteQuality
SIO_000300: 2.247355e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

GenotypeDepth
all individuals: 10282
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 990
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10943
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4079
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4034
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4394
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27761
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.136e1

FS
type: SiteQuality
SIO_000300: 1.508e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: -7.853e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 2.247501e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.317e0

GenotypeDepth
all individuals: 643
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 2615
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4079
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4038
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27762
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4379
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

DP
type: SiteQuality
SIO_000300: 2.247938e6

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

GenotypeDepth
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 297
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4078
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27766
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4038
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10830
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4279
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.247776e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.108e1

VQSLOD
type: SiteQuality
SIO_000300: -7.831e-1

GenotypeDepth
all individuals: 159
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4468
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4393
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10831
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27771
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 2
allele frequency: 1.213150551983501e-4
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.43e1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.298e0

FS
type: SiteQuality
SIO_000300: 1.278e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.45e-1

DP
type: SiteQuality
SIO_000300: 2.248057e6

VQSLOD
type: SiteQuality
SIO_000300: -5.916e-1

GenotypeDepth
all individuals: 365
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2616
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1587
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4402
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27772
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 2.248046e6

QD
type: SiteQuality
SIO_000300: 1.678e1

VQSLOD
type: SiteQuality
SIO_000300: 2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

FS
type: SiteQuality
SIO_000300: 2.648e0

GenotypeDepth
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9410
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 491
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10788
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27775
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212856276531231e-4
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 2.248297e6

FS
type: SiteQuality
SIO_000300: 2.635e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

QD
type: SiteQuality
SIO_000300: 1.045e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 10847
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4470
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 491
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4410
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10759
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27775
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2430
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

FS
type: SiteQuality
SIO_000300: 5.678e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.079e0

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

DP
type: SiteQuality
SIO_000300: 2.248431e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.139e1

GenotypeDepth
all individuals: 2616
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1587
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10581
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27782
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4089
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4072
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0578e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.75e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.478e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.579e0

DP
type: SiteQuality
SIO_000300: 2.248687e6

GenotypeDepth
all individuals: 298
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 641
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4090
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4304
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4450
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27786
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10607
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

FS
type: SiteQuality
SIO_000300: 9.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.285e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.489e1

DP
type: SiteQuality
SIO_000300: 2.248673e6

GenotypeDepth
all individuals: 702
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 193
bin: 8.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1587
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2443
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27796
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10528
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 10
allele frequency: 9.635767970707265e-4
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-1

DP
type: SiteQuality
SIO_000300: 2.248596e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.523e1

GenotypeDepth
all individuals: 299
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 641
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9424
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27794
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2440
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4088
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10475
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-1

DP
type: SiteQuality
SIO_000300: 2.24784e6

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.54e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.632e1

GenotypeDepth
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4092
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10375
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27795
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.257e0

MQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.519e0

QD
type: SiteQuality
SIO_000300: 1.37e1

FS
type: SiteQuality
SIO_000300: 3.4558e1

DP
type: SiteQuality
SIO_000300: 2.247404e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

GenotypeDepth
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10933
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 704
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4436
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27810
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2436
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4330
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4096
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

DP
type: SiteQuality
SIO_000300: 2.246491e6

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.144e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

QD
type: SiteQuality
SIO_000300: 1.434e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 2621
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10933
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 642
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4097
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4431
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27811
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2440
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.375e1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-1

FS
type: SiteQuality
SIO_000300: 6.655e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.71e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

DP
type: SiteQuality
SIO_000300: 2.246129e6

GenotypeDepth
all individuals: 993
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7043
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4419
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4096
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27812
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

DP
type: SiteQuality
SIO_000300: 2.244417e6

QD
type: SiteQuality
SIO_000300: 1.349e1

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 3.844e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

GenotypeDepth
all individuals: 2620
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 367
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27812
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4418
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4096
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

FS
type: SiteQuality
SIO_000300: 6.906e0

MQ
type: SiteQuality
SIO_000300: 5.902e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.768e-1

DP
type: SiteQuality
SIO_000300: 2.244132e6

QD
type: SiteQuality
SIO_000300: 1.36e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

GenotypeDepth
all individuals: 704
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 9622
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27815
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503714174009804e-5
allele num: 66502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.543e0

DP
type: SiteQuality
SIO_000300: 2.243821e6

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e0

QD
type: SiteQuality
SIO_000300: 1.555e1

GenotypeDepth
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 641
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27815
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007428348019608e-5
allele num: 66502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

DP
type: SiteQuality
SIO_000300: 2.243821e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

FS
type: SiteQuality
SIO_000300: 1.543e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e0

QD
type: SiteQuality
SIO_000300: 1.555e1

GenotypeDepth
all individuals: 1587
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10010
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4116
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27816
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2434
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 2.242883e6

MQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 1.338e1

FS
type: SiteQuality
SIO_000300: 6.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.417e0

GenotypeDepth
all individuals: 300
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2447
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4328
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27818
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.514129224472599e-5
allele num: 66458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 2.242193e6

QD
type: SiteQuality
SIO_000300: 1.36e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 2.716e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.713e0

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeDepth
all individuals: 301
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9897
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27819
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.51426507764536e-5
allele num: 66456
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.507e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e0

QD
type: SiteQuality
SIO_000300: 1.425e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.24195e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 301
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 450
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27822
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.018295618680789e-5
allele num: 66464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.099e0

QD
type: SiteQuality
SIO_000300: 1.601e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.01e-2

DP
type: SiteQuality
SIO_000300: 2.242096e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.927e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: -4.98e-1

GenotypeDepth
all individuals: 2621
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9912
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27823
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.952362358453729e-4
allele num: 10244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

FS
type: SiteQuality
SIO_000300: 8.949e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

DP
type: SiteQuality
SIO_000300: 2.24174e6

QD
type: SiteQuality
SIO_000300: 1.665e1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 645
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27823
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4394
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.516439841021318e-5
allele num: 66424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e0

QD
type: SiteQuality
SIO_000300: 1.409e1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 2.240039e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

GenotypeDepth
all individuals: 652
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4330
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9748
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27829
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 4123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.516983859311009e-5
allele num: 66416
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.94521892794031e-4
allele num: 10186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.241910071506484e-4
allele num: 16502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.743e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 2.24093e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

GenotypeDepth
all individuals: 2623
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27827
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4386
bin: 6.75e1
variant carriers: 0