16-57108605-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57108605
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57108605
    reference: chr 16
allele count: 3
allele frequency: 2.471658317954126e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.513+10C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.211+10C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4751+10C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4664+10C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*159+10C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4664+10C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*608+10C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*159+10C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*608+10C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*819+10C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23000
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

16-57108606-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57108606
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57108606
    reference: chr 16
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.513+11G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4751+11G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.211+11G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4664+11G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*608+11G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4664+11G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*608+11G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*159+11G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*159+11G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*819+11G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22997
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

16-57108609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57108609
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57108609
    reference: chr 16
allele count: 3
allele frequency: 2.471902705909495e-5
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.211+14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4751+14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*608+14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.513+14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*159+14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*159+14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4664+14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*608+14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*819+14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4664+14C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22997
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

16-57108610-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57108610
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57108610
    reference: chr 16
allele count: 19
allele frequency: 1.565538380409347e-4
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*608+15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.211+15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.513+15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4664+15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*159+15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*159+15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4751+15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4664+15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*608+15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*819+15G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22996
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

16-57108611-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57108611
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57108611
    reference: chr 16
allele count: 4
allele frequency: 3.295924589245398e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*608+16G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.211+16G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*819+16G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*159+16G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*159+16G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4664+16G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4664+16G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4751+16G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*608+16G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.513+16G>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22986
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-57108612-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57108612
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57108612
    reference: chr 16
allele count: 6
allele frequency: 4.944212798918866e-5
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.211+17C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*608+17C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4751+17C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4664+17C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*159+17C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.513+17C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4664+17C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*819+17C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*159+17C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*608+17C>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22985
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

16-57108617-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57108617
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57108617
    reference: chr 16
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*819+22T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*608+22T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4751+22T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.513+22T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*608+22T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*159+22T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*159+22T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4664+22T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4664+22T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.211+22T>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22984
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

16-57108639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57108639
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57108639
    reference: chr 16
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*159+44C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*159+44C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.211+44C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4664+44C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.513+44C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4664+44C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*608+44C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4751+44C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*608+44C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*819+44C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-57108646-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57108646
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57108646
    reference: chr 16
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4664+51C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*159+51C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4664+51C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4751+51C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*608+51C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.211+51C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.513+51C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*159+51C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*819+51C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*608+51C>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22982
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

16-57108646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57108646
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57108646
    reference: chr 16
allele count: 5
allele frequency: 4.122555324692458e-5
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*608+51C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4751+51C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.513+51C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*819+51C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*159+51C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*159+51C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*608+51C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4664+51C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4664+51C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.211+51C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22982
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

16-57109816-ATTTATTTCTAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57109816
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57109805
    reference: chr 16
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: ATTTATTTCTAT
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

16-57109824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57109824
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57109824
    reference: chr 16
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-907C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-907C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.212-29C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-907C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-907C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-907C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-907C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-907C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-907C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-907C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.5e0
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 7
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

16-57109899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57109899
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57109899
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-832C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-832C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-832C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-832C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-832C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-832C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-832C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-832C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.258C>T
  hgvsp: ENSP00000444960.1:p.His87Tyr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.63C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-832C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His87Tyr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

16-57109928-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57109928
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57109928
    reference: chr 16
allele count: 172
allele frequency: 3.017543859649123e-1
allele num: 570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-803C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.287C>G
  hgvsp: ENSP00000444960.1:p.Ser96Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-803C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.92C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-803C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-803C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-803C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-803C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-803C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-803C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-803C>G
  variant of: http://identifiers.org/hgnc/29933
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.5e0
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 7.5e0
  variant carriers: 420
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser96Arg
num of homozygotes: 7
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

16-57109943-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57109943
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57109942
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-787delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.108delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-787delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-787delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.303delG
  hgvsp: ENSP00000444960.1:p.Ala102ProfsTer4
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-787delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-787delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-787delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-787delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-787delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-787delG
  variant of: http://identifiers.org/hgnc/29933
canonical: false
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala102ProfsTer4
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: AG
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

16-57109952-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57109952
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57109952
    reference: chr 16
allele count: 36
allele frequency: 5.94059405940594e-2
allele num: 606
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-779A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-779A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.116A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-779A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-779A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.311A>G
  hgvsp: ENST00000545349.1:c.311A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-779A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-779A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-779A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-779A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-779A>G
  variant of: http://identifiers.org/hgnc/29933
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 7.5e0
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln104Gln
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

16-57109982-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57109982
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57109982
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-749C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-749C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-749C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-749C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-749C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-749C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-749C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.327+14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-749C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-749C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.132+14C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

16-57109983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57109983
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57109983
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-748G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-748G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-748G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-748G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-748G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-748G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.327+15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.132+15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-748G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-748G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-748G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

16-57110680-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110680
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110680
    reference: chr 16
allele count: 1
allele frequency: 8.278693953241936e-6
allele num: 120792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-51A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-51A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-51A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-51A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-51A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-51A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-51A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-51A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-51A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-51A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-51A>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

16-57110694-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110694
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110694
    reference: chr 16
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-37T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-37T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-37T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-37T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-37T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-37T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-37T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-37T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-37T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-37T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-37T>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

16-57110694-TCCTGAAAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110694
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110686
    reference: chr 16
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 11603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: TCCTGAAAG
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP

16-57110697-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110697
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110697
    reference: chr 16
allele count: 1
allele frequency: 8.271298593879239e-6
allele num: 120900
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-34T>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12235
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

16-57110697-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110697
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110696
    reference: chr 16
allele count: 2
allele frequency: 1.654259718775848e-5
allele num: 120900
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-33delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-33delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-33delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-33delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-33delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-33delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-33delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-33delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-33delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-33delG
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-33delG
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20074
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: TG
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/16-57110700-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110700
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110700
    reference: chr 16
allele count: 78
allele frequency: 6.449585738146819e-4
allele num: 120938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-31A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-31A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-31A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-31A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-31A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-31A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-31A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-31A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-31A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-31A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-31A>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 11877
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12206
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

16-57110701-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110701
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110701
    reference: chr 16
allele count: 1
allele frequency: 8.267195767195768e-6
allele num: 120960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-30A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-30A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-30A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-30A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-30A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-30A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-30A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-30A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-30A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-30A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-30A>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

16-57110702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110702
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110702
    reference: chr 16
allele count: 1
allele frequency: 8.266922390132602e-6
allele num: 120964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-29G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

16-57110704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110704
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110704
    reference: chr 16
allele count: 4
allele frequency: 3.306167655761824e-5
allele num: 120986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-27C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

16-57110706-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110706
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110706
    reference: chr 16
allele count: 3
allele frequency: 2.479256884069948e-5
allele num: 121004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-25C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-25C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-25C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-25C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-25C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-25C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-25C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-25C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-25C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-25C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-25C>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12251
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

16-57110711-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110711
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110711
    reference: chr 16
allele count: 9
allele frequency: 7.437033119587493e-5
allele num: 121016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-20T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-20T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-20T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-20T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-20T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-20T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-20T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-20T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-20T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-20T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-20T>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12250
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

16-57110711-T-TCTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110711
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110714
    reference: chr 16
allele count: 62
allele frequency: 5.123289482382495e-4
allele num: 121016
alternate allele: TCTA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-19_*160-17dupCTA
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-19_*160-17dupCTA
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-19_*609-17dupCTA
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-19_328-17dupCTA
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-19_133-17dupCTA
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-19_*820-17dupCTA
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-19_4752-17dupCTA
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-19_*609-17dupCTA
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-19_514-17dupCTA
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-19_4665-17dupCTA
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-19_4665-17dupCTA
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12250
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12062
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-57110717-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110717
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110717
    reference: chr 16
allele count: 7
allele frequency: 5.782734407269723e-5
allele num: 121050
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-14C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-14C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-14C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-14C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-14C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-14C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-14C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-14C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-14C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-14C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-14C>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-57110718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110718
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110718
    reference: chr 16
allele count: 15
allele frequency: 1.239157372986369e-4
allele num: 121050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-13C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-13C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-13C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-13C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-13C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-13C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-13C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-13C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-13C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-13C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-13C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20473
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12257
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12120
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-57110722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110722
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110722
    reference: chr 16
allele count: 5
allele frequency: 4.129705799758825e-5
allele num: 121074
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4752-9C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.514-9C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*160-9C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*160-9C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*609-9C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4665-9C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.328-9C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.133-9C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*609-9C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4665-9C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*820-9C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/16-57110732-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110732
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110732
    reference: chr 16
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*610C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*821C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.134C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*161C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.329C>A
  hgvsp: ENSP00000444960.1:p.Asp110Glu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4666C>A
  hgvsp: ENSP00000308886.7:p.Leu1556Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4666C>A
  hgvsp: ENSP00000441727.1:p.Leu1556Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*161C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.515C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4753C>A
  hgvsp: ENSP00000262510.6:p.Leu1585Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*610C>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1585Met
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP

16-57110733-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110733
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110733
    reference: chr 16
allele count: 1
allele frequency: 8.259002312520648e-6
allele num: 121080
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4754T>C
  hgvsp: ENSP00000262510.6:p.Leu1585Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*162T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*611T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.516T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*611T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*162T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4667T>C
  hgvsp: ENSP00000308886.7:p.Leu1556Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.135T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*822T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.330T>C
  hgvsp: ENSP00000444960.1:p.Ter111ArgextTer23
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4667T>C
  hgvsp: ENSP00000441727.1:p.Leu1556Pro
  variant of: http://identifiers.org/hgnc/29933
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter111ArgextTer23
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

16-57110743-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110743
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110743
    reference: chr 16
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4677C>T
  hgvsp: ENST00000308149.7:c.4677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4677C>T
  hgvsp: ENST00000539144.1:c.4677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*172C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.145C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*172C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.526C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*621C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*621C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4764C>T
  hgvsp: ENST00000262510.6:c.4764C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*832C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn1588Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

16-57110749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110749
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110749
    reference: chr 16
allele count: 45
allele frequency: 3.717779246530073e-4
allele num: 121040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*178C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.532C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4683C>T
  hgvsp: ENST00000539144.1:c.4683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*627C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4683C>T
  hgvsp: ENST00000308149.7:c.4683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*838C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*178C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4770C>T
  hgvsp: ENST00000262510.6:c.4770C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*627C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.151C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20547
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile1590Ile
num of homozygotes: 2
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

16-57110750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110750
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110750
    reference: chr 16
allele count: 5
allele frequency: 4.130797574395664e-5
allele num: 121042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*628G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*179G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*179G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.533G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4771G>A
  hgvsp: ENSP00000262510.6:p.Gly1591Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4684G>A
  hgvsp: ENSP00000308886.7:p.Gly1562Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.152G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4684G>A
  hgvsp: ENSP00000441727.1:p.Gly1562Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*839G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*628G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12275
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1591Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

16-57110758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110758
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110758
    reference: chr 16
allele count: 18
allele frequency: 1.487308302485457e-4
allele num: 121024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*187C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*636C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*847C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.160C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4692C>T
  hgvsp: ENST00000308149.7:c.4692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4779C>T
  hgvsp: ENST00000262510.6:c.4779C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4692C>T
  hgvsp: ENST00000539144.1:c.4692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*636C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.541C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*187C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20555
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1593Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

16-57110759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110759
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110759
    reference: chr 16
allele count: 2
allele frequency: 1.652592090694254e-5
allele num: 121022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.161G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*188G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4693G>A
  hgvsp: ENSP00000441727.1:p.Gly1565Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*637G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*637G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*188G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4693G>A
  hgvsp: ENSP00000308886.7:p.Gly1565Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4780G>A
  hgvsp: ENSP00000262510.6:p.Gly1594Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000544189
  gene symbol: NLRC5
  hgvsc: ENST00000544189.1:n.542G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*848G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1594Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

16-57110770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110770
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110770
    reference: chr 16
allele count: 1
allele frequency: 8.267742575567167e-6
allele num: 120952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*199C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*648C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4791C>T
  hgvsp: ENST00000262510.6:c.4791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4704C>T
  hgvsp: ENST00000539144.1:c.4704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*648C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*859C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.172C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4704C>T
  hgvsp: ENST00000308149.7:c.4704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*199C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27478
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His1597His
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/16-57110771-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110771
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110771
    reference: chr 16
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*200C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4792C>A
  hgvsp: ENSP00000262510.6:p.Leu1598Ile
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*860C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4705C>A
  hgvsp: ENSP00000441727.1:p.Leu1569Ile
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4705C>A
  hgvsp: ENSP00000308886.7:p.Leu1569Ile
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*649C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*36C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.173C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*200C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*649C>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11864
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu1598Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

16-57110776-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110776
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110776
    reference: chr 16
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4710T>C
  hgvsp: ENST00000308149.7:c.4710T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*41T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*205T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4797T>C
  hgvsp: ENST00000262510.6:c.4797T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*654T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*654T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*205T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4710T>C
  hgvsp: ENST00000539144.1:c.4710T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.178T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*865T>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser1599Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

16-57110786-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110786
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110786
    reference: chr 16
allele count: 10
allele frequency: 8.275953389830508e-5
allele num: 120832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4720A>G
  hgvsp: ENSP00000441727.1:p.Arg1574Gly
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.188A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*664A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*215A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*875A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*51A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*215A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*664A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4807A>G
  hgvsp: ENSP00000262510.6:p.Arg1603Gly
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4720A>G
  hgvsp: ENSP00000308886.7:p.Arg1574Gly
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12255
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1603Gly
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

16-57110796-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110796
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110796
    reference: chr 16
allele count: 3
allele frequency: 2.484142887898912e-5
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*225C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4817C>G
  hgvsp: ENSP00000262510.6:p.Thr1606Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*61C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*885C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4730C>G
  hgvsp: ENSP00000441727.1:p.Thr1577Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.198C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*225C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4730C>G
  hgvsp: ENSP00000308886.7:p.Thr1577Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*674C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*674C>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8674
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr1606Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-57110798-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110798
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110798
    reference: chr 16
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*887A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.200A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*227A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4732A>G
  hgvsp: ENSP00000308886.7:p.Ser1578Gly
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4819A>G
  hgvsp: ENSP00000262510.6:p.Ser1607Gly
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*227A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*63A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4732A>G
  hgvsp: ENSP00000441727.1:p.Ser1578Gly
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*676A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*676A>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser1607Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

16-57110799-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110799
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110799
    reference: chr 16
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.201G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*677G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4733G>C
  hgvsp: ENSP00000441727.1:p.Ser1578Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4820G>C
  hgvsp: ENSP00000262510.6:p.Ser1607Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*677G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*228G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*64G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*888G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4733G>C
  hgvsp: ENSP00000308886.7:p.Ser1578Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*228G>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser1607Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

16-57110806-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110806
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110806
    reference: chr 16
allele count: 3
allele frequency: 2.485871961021528e-5
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.208G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*71G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4827G>A
  hgvsp: ENST00000262510.6:c.4827G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*684G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*895G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*684G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4740G>A
  hgvsp: ENST00000539144.1:c.4740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*235G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4740G>A
  hgvsp: ENST00000308149.7:c.4740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*235G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu1609Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

16-57110812-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110812
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110812
    reference: chr 16
allele count: 2
allele frequency: 1.658567329540743e-5
allele num: 120586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*690G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*241G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*901G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4746G>A
  hgvsp: ENST00000308149.7:c.4746G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*241G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4833G>A
  hgvsp: ENST00000262510.6:c.4833G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.214G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*690G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4746G>A
  hgvsp: ENST00000539144.1:c.4746G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.4833G>A
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

16-57110816-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110816
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110816
    reference: chr 16
allele count: 2
allele frequency: 1.659035105182826e-5
allele num: 120552
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+2T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+2T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+2T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+2T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+2T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+2T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+2T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+2T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+2T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+2T>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11293
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
hgvs: c.4835+2T>C
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-57110817-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110817
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110817
    reference: chr 16
allele count: 1
allele frequency: 8.297791128001726e-6
allele num: 120514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+3G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+3G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+3G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+3G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+3G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+3G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+3G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+3G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+3G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+3G>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.4835+3G>C
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-57110817-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110817
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110817
    reference: chr 16
allele count: 1
allele frequency: 8.297791128001726e-6
allele num: 120514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+3G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20359
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.4835+3G>A
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

16-57110830-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110830
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110830
    reference: chr 16
allele count: 2
allele frequency: 1.663589026966778e-5
allele num: 120222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+16T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+16T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+16T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+16T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+16T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+16T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+16T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+16T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+16T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+16T>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

16-57110834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110834
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110834
    reference: chr 16
allele count: 1
allele frequency: 8.327781479013991e-6
allele num: 120080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+20C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+20C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+20C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+20C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+20C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+20C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+20C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+20C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+20C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+20C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

16-57110838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110838
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110838
    reference: chr 16
allele count: 1
allele frequency: 8.333750020834376e-6
allele num: 119994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+24G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/16-57110841-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110841
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110841
    reference: chr 16
allele count: 1
allele frequency: 8.339031671642289e-6
allele num: 119918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+27C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+27C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+27C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+27C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+27C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+27C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+27C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+27C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+27C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+27C>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

16-57110841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110841
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110841
    reference: chr 16
allele count: 1
allele frequency: 8.339031671642289e-6
allele num: 119918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+27C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+27C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/16-57110842-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110842
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110842
    reference: chr 16
allele count: 2
allele frequency: 1.668001067520683e-5
allele num: 119904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+28C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+28C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+28C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+28C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+28C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+28C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+28C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+28C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+28C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+28C>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9689
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

16-57110857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110857
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110857
    reference: chr 16
allele count: 10
allele frequency: 8.380543729677182e-5
allele num: 119324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+43C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9911
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

16-57110858-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110858
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110858
    reference: chr 16
allele count: 9
allele frequency: 7.561119045618751e-5
allele num: 119030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+44G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+44G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+44G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+44G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+44G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+44G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+44G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+44G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+44G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+44G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14441
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9712
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7765
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

16-57110860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110860
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110860
    reference: chr 16
allele count: 1
allele frequency: 8.385744234800838e-6
allele num: 119250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+46G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+46G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+46G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+46G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+46G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+46G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+46G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+46G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+46G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+46G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9128
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

16-57110860-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110860
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110860
    reference: chr 16
allele count: 1
allele frequency: 8.385744234800838e-6
allele num: 119250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+46G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+46G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+46G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+46G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+46G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+46G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+46G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+46G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+46G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+46G>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10820
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

16-57110862-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57110862
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57110862
    reference: chr 16
allele count: 1
allele frequency: 8.39390937935434e-6
allele num: 119134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4748+48A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4835+48A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4748+48A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*903+48A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*79+48A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*692+48A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*243+48A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*692+48A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.216+48A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*243+48A>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

16-57111161-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57111161
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57111161
    reference: chr 16
allele count: 2
allele frequency: 1.6583472910897e-5
allele num: 120602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4749-47A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*693-47A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.217-47A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4836-47A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*693-47A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*904-47A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*244-47A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4749-47A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*244-47A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*80-47A>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14226
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

16-57111171-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57111171
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57111171
    reference: chr 16
allele count: 1
allele frequency: 8.286377195889957e-6
allele num: 120680
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4836-37A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4749-37A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*693-37A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*904-37A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*244-37A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.217-37A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4749-37A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*693-37A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*80-37A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*244-37A>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22580
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/16-57111172-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57111172
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57111172
    reference: chr 16
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4749-36C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*693-36C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4749-36C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*80-36C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*904-36C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*693-36C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4836-36C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*244-36C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.217-36C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*244-36C>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7450
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

16-57111172-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57111172
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57111172
    reference: chr 16
allele count: 13
allele frequency: 1.078176057856586e-4
allele num: 120574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*244-36C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*693-36C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4749-36C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4749-36C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*80-36C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*693-36C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*244-36C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.217-36C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*904-36C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4836-36C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 22727
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15822
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

16-57111173-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57111173
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57111173
    reference: chr 16
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.217-35G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4836-35G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4749-35G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*244-35G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.*693-35G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.*693-35G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.4749-35G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*904-35G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444960
  ensembl transcript: ENST00000545349
  gene symbol: NLRC5
  hgvsc: ENST00000545349.1:c.*80-35G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*244-35G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15881
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

16-57111173-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57111173
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57111173
    reference: chr 16
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.*244-35G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.4749-35G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.*904-35G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.*244-35G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534927
  gene symbol: NLRC5
  hgvsc: ENST00000534927.1:n.217-35G>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.4836-35G>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 51566
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496537665997182e-5
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.094e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
SIO_000300: 1.215e1

DP
type: SiteQuality
SIO_000300: 5.110522e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51565
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 5.110157e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.4e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51565
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.129e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 5.109259e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

GenotypeQuality
all individuals: 1581
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51566
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 1081
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.91085003455425e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.056935190793458e-4
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 5.108859e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51562
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.846893633391037e-4
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.473e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

FS
type: SiteQuality
SIO_000300: 1.859e0

DP
type: SiteQuality
SIO_000300: 5.10746e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.24e0

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51561
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497211728728189e-5
allele num: 66708
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.349e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.538e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 5.107151e6

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

GenotypeQuality
all individuals: 115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51556
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.104133e6

MQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 5.795e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.987e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 51550
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 7.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.68e-1

InbreedingCoeff
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SIO_000300: 1.13e-2

VQSLOD
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DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.734e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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VQSLOD
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MQRankSum
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ClippingRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 3.029935765361775e-4
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 7.8e-3

MQ
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VQSLOD
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DP
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele frequency: NaN
allele num: 0
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East Asian
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allele frequency: NaN
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.401e3

VQSLOD
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SIO_000300: 3.93e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -1.227e-1

BaseQRankSum
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SIO_000300: -7.27e-1

ReadPosRankSum
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SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 2.38e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 19

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele frequency: NaN
allele num: 0
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Other
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allele num: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
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SIO_000300: 7.407e3

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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FS
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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East Asian
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
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European (Non-Finnish)
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VQSLOD
type: SiteQuality
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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GenotypeQuality
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variant carriers: 26

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 37

GenotypeQuality
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variant carriers: 41

European (Non-Finnish)
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allele frequency: 3.243243243243243e-1
allele num: 148
num of homozygotes: 3

Latino
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African
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allele frequency: 3.636363636363636e-1
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East Asian
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Other
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South Asian
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allele frequency: 3.192090395480226e-1
allele num: 354
num of homozygotes: 3

European (Finnish)
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allele num: 0
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FS
type: SiteQuality
SIO_000300: 1.776e0

BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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African
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European (Non-Finnish)
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VQSLOD
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QD
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FS
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MQ
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InbreedingCoeff
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DP
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

African
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allele frequency: 7.142857142857142e-2
allele num: 14
num of homozygotes: 0

South Asian
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allele frequency: 2.380952380952381e-2
allele num: 378
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East Asian
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 1.625e-1
allele num: 160
num of homozygotes: 0

Latino
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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East Asian
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African
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European (Finnish)
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MQ
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DP
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VQSLOD
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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East Asian
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VQSLOD
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FS
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DP
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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South Asian
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FS
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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East Asian
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African
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MQ
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VQSLOD
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DP
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 77

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 7.25e1
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GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 78
allele frequency: 6.769658045478215e-3
allele num: 11522
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66490
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.519e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.917527e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 7.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4483
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

DP
type: SiteQuality
SIO_000300: 1.91669e6

VQSLOD
type: SiteQuality
SIO_000300: -7.937e-1

QD
type: SiteQuality
SIO_000300: 1.828e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.710623422023694e-5
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

DP
type: SiteQuality
SIO_000300: 1.917293e6

ReadPosRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: -1.337e0

BaseQRankSum
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SIO_000300: -3.224e0

QD
type: SiteQuality
SIO_000300: 1.787e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.892e1

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 275
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4488
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.013229104028864e-5
allele num: 66520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

DP
type: SiteQuality
SIO_000300: 1.918489e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 2.506e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e-1

QD
type: SiteQuality
SIO_000300: 1.369e1

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.5092439500977e-5
allele num: 66530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

FS
type: SiteQuality
SIO_000300: 9.423e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.497e1

DP
type: SiteQuality
SIO_000300: 1.919172e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.352529229659463e-4
allele num: 66542
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.603e1

BaseQRankSum
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SIO_000300: 1.63e-1

VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.799e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

MQRankSum
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SIO_000300: -1.039e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 61
allele frequency: 5.921180353329451e-3
allele num: 10302
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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FS
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MQRankSum
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QD
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MQ
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ReadPosRankSum
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SIO_000300: -1.86e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Latino
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allele count: 0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.051777503981729e-4
allele num: 66554
num of homozygotes: 0

FS
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 15
allele frequency: 2.253808937103705e-4
allele num: 66554
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

MQ
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SIO_000300: 6.0e1

MQRankSum
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DP
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FS
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: 1.6e-1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 2.426301103967002e-4
allele num: 16486
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

VQSLOD
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SIO_000300: 2.36e-1

ReadPosRankSum
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FS
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InbreedingCoeff
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DP
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -3.98e-1

QD
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SIO_000300: 1.23e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele num: 8646
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.879e0

DP
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SIO_000300: 1.923145e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

Latino
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African
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allele num: 10310
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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Other
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South Asian
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16490
num of homozygotes: 0

African
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European (Non-Finnish)
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Latino
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num of homozygotes: 0

European (Finnish)
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Other
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East Asian
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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DP
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MQRankSum
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 6.010518407212622e-5
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European (Finnish)
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Other
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African
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East Asian
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South Asian
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.704968944099378e-5
allele num: 10304
num of homozygotes: 0

Latino
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allele num: 11540
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
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Other
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allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

FS
type: SiteQuality
SIO_000300: 1.124e0

DP
type: SiteQuality
SIO_000300: 1.922978e6

QD
type: SiteQuality
SIO_000300: 1.174e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
all individuals: 99
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1477
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8740
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27542
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9220
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 3203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.673137587964086e-4
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.882741215298e-4
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005710850616171e-5
allele num: 66540
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.58e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.097e1

DP
type: SiteQuality
SIO_000300: 1.923427e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.428e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
all individuals: 144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4485
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variant carriers: 0

GenotypeQuality
all individuals: 27568
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 291
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.922441e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

QD
type: SiteQuality
SIO_000300: 1.05e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

FS
type: SiteQuality
SIO_000300: 5.33e-1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3396
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variant carriers: 0

GenotypeQuality
all individuals: 3197
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variant carriers: 0

GenotypeQuality
all individuals: 362
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variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 8724
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 9205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4476
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.338e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.004e0

VQSLOD
type: SiteQuality
SIO_000300: -1.051e0

FS
type: SiteQuality
SIO_000300: 8.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

MQ
type: SiteQuality
SIO_000300: 5.782e1

DP
type: SiteQuality
SIO_000300: 1.920881e6

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 9205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
all individuals: 375
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variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8721
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variant carriers: 0

GenotypeQuality
all individuals: 27404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.281e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.139e0

QD
type: SiteQuality
SIO_000300: 1.119e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 1.920584e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
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variant carriers: 0

GenotypeQuality
all individuals: 8711
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 4473
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2032
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 106
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GenotypeQuality
all individuals: 27378
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variant carriers: 0

GenotypeQuality
all individuals: 9204
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.67e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.039e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.135e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.718e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.919908e6

QD
type: SiteQuality
SIO_000300: 9.98e0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 93
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GenotypeQuality
all individuals: 3378
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9209
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variant carriers: 10

GenotypeQuality
all individuals: 136
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variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.601908065915004e-4
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.053740779768177e-4
allele num: 66430
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.094e1

DP
type: SiteQuality
SIO_000300: 1.918248e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.81e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 34
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011776044333343e-5
allele num: 66406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 5.297e0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

DP
type: SiteQuality
SIO_000300: 1.916684e6

GenotypeQuality
all individuals: 1474
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 9202
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: -2.753e-1

QD
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SIO_000300: 1.458e1

DP
type: SiteQuality
SIO_000300: 1.915683e6

ClippingRankSum
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SIO_000300: -1.137e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.897e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

FS
type: SiteQuality
SIO_000300: 2.429e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.23e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506205566935775e-5
allele num: 66392
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

QD
type: SiteQuality
SIO_000300: 9.76e0

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.915658e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013682116810319e-5
allele num: 66364
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.914174e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508250128201261e-5
allele num: 66302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.801999607920016e-5
allele num: 10202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.032e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e0

DP
type: SiteQuality
SIO_000300: 1.911699e6

FS
type: SiteQuality
SIO_000300: 7.737e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-3

QD
type: SiteQuality
SIO_000300: 1.569e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.261e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9199
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508750754375377e-5
allele num: 66280
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.910537e6

QD
type: SiteQuality
SIO_000300: 1.346e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509297271190534e-5
allele num: 66256
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
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VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509297271190534e-5
allele num: 66256
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.718395815170009e-5
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
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East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.062e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

DP
type: SiteQuality
SIO_000300: 1.897564e6

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3280
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4369
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24954
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9187
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515013786625458e-5
allele num: 66006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.889102e6

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.968e0

FS
type: SiteQuality
SIO_000300: 5.992e0

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9183
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3138
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516438189979376e-5
allele num: 65944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.029e1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 1.88155e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

FS
type: SiteQuality
SIO_000300: 5.551e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 24153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9183
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65918
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 3.059e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.978e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.874258e6

QD
type: SiteQuality
SIO_000300: 1.406e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9183
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 709
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24153
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517036317849449e-5
allele num: 65918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 3.059e0

VQSLOD
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.978e0

QD
type: SiteQuality
SIO_000300: 1.406e1

DP
type: SiteQuality
SIO_000300: 1.874258e6

GenotypeQuality
all individuals: 751
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9180
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1615
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1987
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variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8024
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517680983457277e-5
allele num: 65890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.739730816290858e-5
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.133e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: -4.78e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.339e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.775e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.871329e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 1779
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2394
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2179
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variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 174
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variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 1499
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variant carriers: 0

GenotypeQuality
all individuals: 445
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variant carriers: 0

GenotypeQuality
all individuals: 16164
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
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variant carriers: 0

GenotypeQuality
all individuals: 3971
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9139
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2983
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.990430622009569e-4
allele num: 10032
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.829714564527934e-4
allele num: 16396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.101281269066504e-5
allele num: 65560
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.339e1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.787195e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1968
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
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variant carriers: 0

GenotypeQuality
all individuals: 512
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variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 3858
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GenotypeQuality
all individuals: 15325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
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variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9130
bin: 9.75e1
variant carriers: 8

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173984503404555e-4
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529566520847992e-5
allele num: 65378
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.00600720865038e-4
allele num: 9988
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.220256253813301e-4
allele num: 16390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 3.086e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

DP
type: SiteQuality
SIO_000300: 1.782056e6

QD
type: SiteQuality
SIO_000300: 1.413e1

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
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GenotypeQuality
all individuals: 3551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3298
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 1747
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variant carriers: 0

GenotypeQuality
all individuals: 208
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variant carriers: 0

GenotypeQuality
all individuals: 2718
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GenotypeQuality
all individuals: 2699
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GenotypeQuality
all individuals: 159
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GenotypeQuality
all individuals: 14359
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GenotypeQuality
all individuals: 3841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6344
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2942
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527183872938302e-5
allele num: 65480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
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Other
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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SIO_000300: -1.62e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

African
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allele num: 10020
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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VQSLOD
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MQRankSum
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DP
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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allele num: 16396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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QD
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VQSLOD
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MQ
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BaseQRankSum
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SIO_000300: 5.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

DP
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SIO_000300: 1.765257e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Latino
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allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 2
allele frequency: 1.927525057825752e-4
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.445e0

ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.725985e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66402
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Other
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South Asian
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allele frequency: 6.16370808678501e-5
allele num: 16224
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
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ClippingRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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African
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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FS
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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allele num: 66348
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East Asian
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South Asian
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Latino
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Other
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BaseQRankSum
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MQ
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10376
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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