15-48054416-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054416
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054416
    reference: chr 15
allele count: 2
allele frequency: 1.649402916144356e-5
allele num: 121256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.558C>T
  hgvsp: ENST00000358066.4:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.558C>T
  hgvsp: ENST00000558816.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.558C>T
  hgvsp: ENST00000316364.5:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453755
  ensembl transcript: ENST00000559196
  gene symbol: SEMA6D
  hgvsc: ENST00000559196.1:c.558C>T
  hgvsp: ENST00000559196.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.558C>T
  hgvsp: ENST00000389428.3:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.558C>T
  hgvsp: ENST00000536845.2:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.558C>T
  hgvsp: ENST00000558014.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.558C>T
  hgvsp: ENST00000537942.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.558C>T
  hgvsp: ENST00000389425.3:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.558C>T
  hgvsp: ENST00000355997.3:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.558C>T
  hgvsp: ENST00000389433.2:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.558C>T
  hgvsp: ENST00000389432.2:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.558C>T
  hgvsp: ENST00000354744.4:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6708
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala186Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/15-48054427-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054427
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054427
    reference: chr 15
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.569A>C
  hgvsp: ENSP00000442040.1:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.569A>C
  hgvsp: ENSP00000374083.2:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.569A>C
  hgvsp: ENSP00000374076.3:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.569A>C
  hgvsp: ENSP00000452815.1:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.569A>C
  hgvsp: ENSP00000346786.4:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.569A>C
  hgvsp: ENSP00000350770.4:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.569A>C
  hgvsp: ENSP00000324857.5:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.569A>C
  hgvsp: ENSP00000453661.1:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.569A>C
  hgvsp: ENSP00000374079.3:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453755
  ensembl transcript: ENST00000559196
  gene symbol: SEMA6D
  hgvsc: ENST00000559196.1:c.569A>C
  hgvsp: ENSP00000453755.1:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.569A>C
  hgvsp: ENSP00000348276.3:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.569A>C
  hgvsp: ENSP00000374084.2:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.569A>C
  hgvsp: ENSP00000446152.2:p.Asp190Ala
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp190Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

15-48054440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054440
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054440
    reference: chr 15
allele count: 5
allele frequency: 4.123303260708219e-5
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.582C>T
  hgvsp: ENST00000389428.3:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453755
  ensembl transcript: ENST00000559196
  gene symbol: SEMA6D
  hgvsc: ENST00000559196.1:c.582C>T
  hgvsp: ENST00000559196.1:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.582C>T
  hgvsp: ENST00000537942.1:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.582C>T
  hgvsp: ENST00000355997.3:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.582C>T
  hgvsp: ENST00000389432.2:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.582C>T
  hgvsp: ENST00000389433.2:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.582C>T
  hgvsp: ENST00000316364.5:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.582C>T
  hgvsp: ENST00000389425.3:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.582C>T
  hgvsp: ENST00000536845.2:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.582C>T
  hgvsp: ENST00000354744.4:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.582C>T
  hgvsp: ENST00000558014.1:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.582C>T
  hgvsp: ENST00000358066.4:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.582C>T
  hgvsp: ENST00000558816.1:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser194Ser
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

15-48054446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054446
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054446
    reference: chr 15
allele count: 166
allele frequency: 1.368846375855529e-3
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.588C>T
  hgvsp: ENST00000389425.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.588C>T
  hgvsp: ENST00000316364.5:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.588C>T
  hgvsp: ENST00000358066.4:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.588C>T
  hgvsp: ENST00000389428.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.588C>T
  hgvsp: ENST00000558014.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.588C>T
  hgvsp: ENST00000536845.2:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453755
  ensembl transcript: ENST00000559196
  gene symbol: SEMA6D
  hgvsc: ENST00000559196.1:c.588C>T
  hgvsp: ENST00000559196.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.588C>T
  hgvsp: ENST00000355997.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.588C>T
  hgvsp: ENST00000558816.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.588C>T
  hgvsp: ENST00000537942.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.588C>T
  hgvsp: ENST00000389432.2:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.588C>T
  hgvsp: ENST00000389433.2:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.588C>T
  hgvsp: ENST00000354744.4:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Ala196Ala
num of homozygotes: 2
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

15-48054468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054468
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054468
    reference: chr 15
allele count: 2
allele frequency: 1.649212501030758e-5
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.610G>A
  hgvsp: ENSP00000374079.3:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.610G>A
  hgvsp: ENSP00000346786.4:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.610G>A
  hgvsp: ENSP00000446152.2:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.610G>A
  hgvsp: ENSP00000453661.1:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.610G>A
  hgvsp: ENSP00000374076.3:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.610G>A
  hgvsp: ENSP00000374084.2:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.610G>A
  hgvsp: ENSP00000348276.3:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.610G>A
  hgvsp: ENSP00000324857.5:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.610G>A
  hgvsp: ENSP00000350770.4:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.610G>A
  hgvsp: ENSP00000374083.2:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.610G>A
  hgvsp: ENSP00000442040.1:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.610G>A
  hgvsp: ENSP00000452815.1:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453755
  ensembl transcript: ENST00000559196
  gene symbol: SEMA6D
  hgvsc: ENST00000559196.1:c.610G>A
  hgvsp: ENSP00000453755.1:p.Asp204Asn
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6922
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp204Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

15-48054471-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054471
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054471
    reference: chr 15
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.613G>A
  hgvsp: ENSP00000348276.3:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.613G>A
  hgvsp: ENSP00000452815.1:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.613G>A
  hgvsp: ENSP00000374076.3:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.613G>A
  hgvsp: ENSP00000442040.1:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453755
  ensembl transcript: ENST00000559196
  gene symbol: SEMA6D
  hgvsc: ENST00000559196.1:c.613G>A
  hgvsp: ENSP00000453755.1:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.613G>A
  hgvsp: ENSP00000346786.4:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.613G>A
  hgvsp: ENSP00000446152.2:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.613G>A
  hgvsp: ENSP00000374079.3:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.613G>A
  hgvsp: ENSP00000374083.2:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.613G>A
  hgvsp: ENSP00000324857.5:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.613G>A
  hgvsp: ENSP00000374084.2:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.613G>A
  hgvsp: ENSP00000453661.1:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.613G>A
  hgvsp: ENSP00000350770.4:p.Gly205Arg
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly205Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-48054473-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054473
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054473
    reference: chr 15
allele count: 26
allele frequency: 2.144011610647492e-4
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.615A>T
  hgvsp: ENST00000389432.2:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.615A>T
  hgvsp: ENST00000389433.2:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453755
  ensembl transcript: ENST00000559196
  gene symbol: SEMA6D
  hgvsc: ENST00000559196.1:c.615A>T
  hgvsp: ENST00000559196.1:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.615A>T
  hgvsp: ENST00000389428.3:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.615A>T
  hgvsp: ENST00000316364.5:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.615A>T
  hgvsp: ENST00000358066.4:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.615A>T
  hgvsp: ENST00000558014.1:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.615A>T
  hgvsp: ENST00000354744.4:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.615A>T
  hgvsp: ENST00000537942.1:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.615A>T
  hgvsp: ENST00000536845.2:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.615A>T
  hgvsp: ENST00000355997.3:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.615A>T
  hgvsp: ENST00000389425.3:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.615A>T
  hgvsp: ENST00000558816.1:c.615A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly205Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-48054493-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054493
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054493
    reference: chr 15
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.635A>C
  hgvsp: ENSP00000446152.2:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.635A>C
  hgvsp: ENSP00000453661.1:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.635A>C
  hgvsp: ENSP00000374076.3:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.635A>C
  hgvsp: ENSP00000374084.2:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.635A>C
  hgvsp: ENSP00000324857.5:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.635A>C
  hgvsp: ENSP00000350770.4:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.635A>C
  hgvsp: ENSP00000374083.2:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.635A>C
  hgvsp: ENSP00000346786.4:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.635A>C
  hgvsp: ENSP00000374079.3:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.635A>C
  hgvsp: ENSP00000442040.1:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453755
  ensembl transcript: ENST00000559196
  gene symbol: SEMA6D
  hgvsc: ENST00000559196.1:c.635A>C
  hgvsp: ENSP00000453755.1:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.635A>C
  hgvsp: ENSP00000452815.1:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.635A>C
  hgvsp: ENSP00000348276.3:p.Lys212Thr
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys212Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

15-48054503-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054503
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054503
    reference: chr 15
allele count: 1
allele frequency: 8.254639107178234e-6
allele num: 121144
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.645C>G
  hgvsp: ENST00000558816.1:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.645C>G
  hgvsp: ENST00000537942.1:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.645C>G
  hgvsp: ENST00000358066.4:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.645C>G
  hgvsp: ENST00000389428.3:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453755
  ensembl transcript: ENST00000559196
  gene symbol: SEMA6D
  hgvsc: ENST00000559196.1:c.645C>G
  hgvsp: ENST00000559196.1:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.645C>G
  hgvsp: ENST00000354744.4:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.645C>G
  hgvsp: ENST00000558014.1:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.645C>G
  hgvsp: ENST00000536845.2:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.645C>G
  hgvsp: ENST00000355997.3:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.645C>G
  hgvsp: ENST00000389425.3:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.645C>G
  hgvsp: ENST00000316364.5:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.645C>G
  hgvsp: ENST00000389433.2:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.645C>G
  hgvsp: ENST00000389432.2:c.645C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser215Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

15-48054508-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054508
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054508
    reference: chr 15
allele count: 1
allele frequency: 8.257365570088519e-6
allele num: 121104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.650G>A
  hgvsp: ENSP00000374083.2:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.650G>A
  hgvsp: ENSP00000348276.3:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.650G>A
  hgvsp: ENSP00000452815.1:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.650G>A
  hgvsp: ENSP00000453661.1:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.650G>A
  hgvsp: ENSP00000374084.2:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.650G>A
  hgvsp: ENSP00000346786.4:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.650G>A
  hgvsp: ENSP00000350770.4:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.650G>A
  hgvsp: ENSP00000324857.5:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453755
  ensembl transcript: ENST00000559196
  gene symbol: SEMA6D
  hgvsc: ENST00000559196.1:c.650G>A
  hgvsp: ENSP00000453755.1:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.650G>A
  hgvsp: ENSP00000374079.3:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.650G>A
  hgvsp: ENSP00000374076.3:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.650G>A
  hgvsp: ENSP00000446152.2:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.650G>A
  hgvsp: ENSP00000442040.1:p.Trp217Ter
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp217Ter
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-48054520-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054520
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054520
    reference: chr 15
allele count: 7
allele frequency: 5.789430154660491e-5
allele num: 120910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+4C>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.658+4C>A
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

15-48054535-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054535
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054535
    reference: chr 15
allele count: 4
allele frequency: 3.313672211544834e-5
allele num: 120712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+19G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

15-48054536-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054536
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054536
    reference: chr 15
allele count: 1
allele frequency: 8.285965232089886e-6
allele num: 120686
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+20T>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

15-48054537-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054537
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054537
    reference: chr 15
allele count: 2
allele frequency: 1.657467720816137e-5
allele num: 120666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+21C>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

15-48054538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054538
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054538
    reference: chr 15
allele count: 8
allele frequency: 6.63031046428749e-5
allele num: 120658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+22G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

15-48054538-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054538
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054538
    reference: chr 15
allele count: 3765
allele frequency: 3.1203898622553e-2
allele num: 120658
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+22G>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 2.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 6.25e1
  variant carriers: 319
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 4.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 2.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 9.75e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.75e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 5.75e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 7420
  bin: 4.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 349
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 5.25e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 3.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.25e1
  variant carriers: 289
genotype quality: GenotypeQuality
num of homozygotes: 75
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

15-48054538-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054538
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054538
    reference: chr 15
allele count: 2
allele frequency: 1.657577616071872e-5
allele num: 120658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+22G>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

15-48054539-TGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054539
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054537
    reference: chr 15
allele count: 1
allele frequency: 8.288162845823595e-6
allele num: 120654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+26_658+27delGG
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: TGG
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

15-48054540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054540
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054540
    reference: chr 15
allele count: 3
allele frequency: 2.487685954525101e-5
allele num: 120594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+24G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP

15-48054547-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054547
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054547
    reference: chr 15
allele count: 1
allele frequency: 8.298204268596276e-6
allele num: 120508
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+31C>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8043
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

15-48054551-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054551
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054551
    reference: chr 15
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+35G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

15-48054568-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48054568
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48054568
    reference: chr 15
allele count: 2
allele frequency: 1.663091020971578e-5
allele num: 120258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.658+52G>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8038
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

15-48055174-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055174
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055174
    reference: chr 15
allele count: 1
allele frequency: 1.084998806501313e-5
allele num: 92166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.659-39A>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8386
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

15-48055182-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055182
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055182
    reference: chr 15
allele count: 2
allele frequency: 2.138442785963262e-5
allele num: 93526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.659-31G>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

15-48055199-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055199
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055199
    reference: chr 15
allele count: 4
allele frequency: 3.886438273644119e-5
allele num: 102922
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.659-14A>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 34988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

15-48055202-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055202
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055202
    reference: chr 15
allele count: 2
allele frequency: 1.905778319865833e-5
allele num: 104944
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.659-11T>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

15-48055206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055206
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055206
    reference: chr 15
allele count: 4
allele frequency: 3.713744568648568e-5
allele num: 107708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.659-7C>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.659-7C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

15-48055226-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055226
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055226
    reference: chr 15
allele count: 1
allele frequency: 8.667914846404549e-6
allele num: 115368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.672T>A
  hgvsp: ENST00000558816.1:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.672T>A
  hgvsp: ENST00000389428.3:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.672T>A
  hgvsp: ENST00000358066.4:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.672T>A
  hgvsp: ENST00000389432.2:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.672T>A
  hgvsp: ENST00000389425.3:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.672T>A
  hgvsp: ENST00000354744.4:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.672T>A
  hgvsp: ENST00000558014.1:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.672T>A
  hgvsp: ENST00000316364.5:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.672T>A
  hgvsp: ENST00000389433.2:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.672T>A
  hgvsp: ENST00000536845.2:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.672T>A
  hgvsp: ENST00000537942.1:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.672T>A
  hgvsp: ENST00000355997.3:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44169
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu224Leu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

15-48055229-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055229
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055229
    reference: chr 15
allele count: 241
allele frequency: 2.080886924086482e-3
allele num: 115816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.675T>C
  hgvsp: ENST00000537942.1:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.675T>C
  hgvsp: ENST00000389425.3:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.675T>C
  hgvsp: ENST00000558014.1:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.675T>C
  hgvsp: ENST00000316364.5:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.675T>C
  hgvsp: ENST00000389432.2:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.675T>C
  hgvsp: ENST00000389428.3:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.675T>C
  hgvsp: ENST00000358066.4:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.675T>C
  hgvsp: ENST00000389433.2:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.675T>C
  hgvsp: ENST00000354744.4:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.675T>C
  hgvsp: ENST00000536845.2:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.675T>C
  hgvsp: ENST00000558816.1:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.675T>C
  hgvsp: ENST00000355997.3:c.675T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44169
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
hgvs: p.His225His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

15-48055232-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055232
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055232
    reference: chr 15
allele count: 1
allele frequency: 8.604667171473808e-6
allele num: 116216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.678C>T
  hgvsp: ENST00000558014.1:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.678C>T
  hgvsp: ENST00000536845.2:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.678C>T
  hgvsp: ENST00000389432.2:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.678C>T
  hgvsp: ENST00000355997.3:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.678C>T
  hgvsp: ENST00000537942.1:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.678C>T
  hgvsp: ENST00000358066.4:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.678C>T
  hgvsp: ENST00000316364.5:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.678C>T
  hgvsp: ENST00000389433.2:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.678C>T
  hgvsp: ENST00000389428.3:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.678C>T
  hgvsp: ENST00000558816.1:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.678C>T
  hgvsp: ENST00000354744.4:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.678C>T
  hgvsp: ENST00000389425.3:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala226Ala
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ

15-48055251-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055251
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055251
    reference: chr 15
allele count: 2
allele frequency: 1.702910273657681e-5
allele num: 117446
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.697G>A
  hgvsp: ENSP00000324857.5:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.697G>A
  hgvsp: ENSP00000446152.2:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.697G>A
  hgvsp: ENSP00000442040.1:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.697G>A
  hgvsp: ENSP00000348276.3:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.697G>A
  hgvsp: ENSP00000453661.1:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.697G>A
  hgvsp: ENSP00000452815.1:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.697G>A
  hgvsp: ENSP00000350770.4:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.697G>A
  hgvsp: ENSP00000374079.3:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.697G>A
  hgvsp: ENSP00000374076.3:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.697G>A
  hgvsp: ENSP00000374083.2:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.697G>A
  hgvsp: ENSP00000346786.4:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.697G>A
  hgvsp: ENSP00000374084.2:p.Val233Ile
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val233Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

15-48055259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055259
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055259
    reference: chr 15
allele count: 1
allele frequency: 8.517162081594413e-6
allele num: 117410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.705C>T
  hgvsp: ENST00000358066.4:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.705C>T
  hgvsp: ENST00000354744.4:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.705C>T
  hgvsp: ENST00000536845.2:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.705C>T
  hgvsp: ENST00000389432.2:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.705C>T
  hgvsp: ENST00000389433.2:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.705C>T
  hgvsp: ENST00000537942.1:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.705C>T
  hgvsp: ENST00000558014.1:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.705C>T
  hgvsp: ENST00000389428.3:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.705C>T
  hgvsp: ENST00000355997.3:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.705C>T
  hgvsp: ENST00000558816.1:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.705C>T
  hgvsp: ENST00000316364.5:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.705C>T
  hgvsp: ENST00000389425.3:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe235Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-48055262-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055262
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055261
    reference: chr 15
allele count: 1
allele frequency: 8.520935939603607e-6
allele num: 117358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.711delT
  hgvsp: ENSP00000348276.3:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.711delT
  hgvsp: ENSP00000452815.1:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.711delT
  hgvsp: ENSP00000324857.5:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.711delT
  hgvsp: ENSP00000374076.3:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.711delT
  hgvsp: ENSP00000374084.2:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.711delT
  hgvsp: ENSP00000374079.3:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.711delT
  hgvsp: ENSP00000350770.4:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.711delT
  hgvsp: ENSP00000453661.1:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.711delT
  hgvsp: ENSP00000346786.4:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.711delT
  hgvsp: ENSP00000446152.2:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.711delT
  hgvsp: ENSP00000374083.2:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.711delT
  hgvsp: ENSP00000442040.1:p.Arg238GlufsTer10
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg238GlufsTer10
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: CT
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP

15-48055266-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055266
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055266
    reference: chr 15
allele count: 1
allele frequency: 8.536064874093044e-6
allele num: 117150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.712C>T
  hgvsp: ENSP00000374079.3:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.712C>T
  hgvsp: ENSP00000374076.3:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.712C>T
  hgvsp: ENSP00000442040.1:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.712C>T
  hgvsp: ENSP00000324857.5:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.712C>T
  hgvsp: ENSP00000350770.4:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.712C>T
  hgvsp: ENSP00000348276.3:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.712C>T
  hgvsp: ENSP00000346786.4:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.712C>T
  hgvsp: ENSP00000453661.1:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.712C>T
  hgvsp: ENSP00000452815.1:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.712C>T
  hgvsp: ENSP00000374084.2:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.712C>T
  hgvsp: ENSP00000446152.2:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.712C>T
  hgvsp: ENSP00000374083.2:p.Arg238Ter
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg238Ter
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-48055267-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055267
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055267
    reference: chr 15
allele count: 1
allele frequency: 8.533879501621437e-6
allele num: 117180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.713G>A
  hgvsp: ENSP00000374084.2:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.713G>A
  hgvsp: ENSP00000346786.4:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.713G>A
  hgvsp: ENSP00000442040.1:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.713G>A
  hgvsp: ENSP00000446152.2:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.713G>A
  hgvsp: ENSP00000374079.3:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.713G>A
  hgvsp: ENSP00000453661.1:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.713G>A
  hgvsp: ENSP00000324857.5:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.713G>A
  hgvsp: ENSP00000374083.2:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.713G>A
  hgvsp: ENSP00000350770.4:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.713G>A
  hgvsp: ENSP00000452815.1:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.713G>A
  hgvsp: ENSP00000348276.3:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.713G>A
  hgvsp: ENSP00000374076.3:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg238Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-48055280-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055280
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055280
    reference: chr 15
allele count: 1
allele frequency: 8.66145824310981e-6
allele num: 115454
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.726C>T
  hgvsp: ENST00000389432.2:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.726C>T
  hgvsp: ENST00000536845.2:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.726C>T
  hgvsp: ENST00000558014.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.726C>T
  hgvsp: ENST00000389425.3:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.726C>T
  hgvsp: ENST00000389433.2:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.726C>T
  hgvsp: ENST00000558816.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.726C>T
  hgvsp: ENST00000354744.4:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.726C>T
  hgvsp: ENST00000389428.3:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.726C>T
  hgvsp: ENST00000316364.5:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.726C>T
  hgvsp: ENST00000355997.3:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.726C>T
  hgvsp: ENST00000358066.4:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.726C>T
  hgvsp: ENST00000537942.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9074
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val242Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

15-48055283-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055283
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055283
    reference: chr 15
allele count: 2
allele frequency: 1.737891242766028e-5
allele num: 115082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.729A>G
  hgvsp: ENST00000537942.1:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.729A>G
  hgvsp: ENST00000355997.3:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.729A>G
  hgvsp: ENST00000558816.1:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.729A>G
  hgvsp: ENST00000558014.1:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.729A>G
  hgvsp: ENST00000389433.2:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.729A>G
  hgvsp: ENST00000354744.4:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.729A>G
  hgvsp: ENST00000358066.4:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.729A>G
  hgvsp: ENST00000316364.5:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.729A>G
  hgvsp: ENST00000389428.3:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.729A>G
  hgvsp: ENST00000536845.2:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.729A>G
  hgvsp: ENST00000389432.2:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.729A>G
  hgvsp: ENST00000389425.3:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40210
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8986
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu243Glu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-48055297-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055297
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055297
    reference: chr 15
allele count: 1
allele frequency: 8.919174441213721e-6
allele num: 112118
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.743G>A
  hgvsp: ENSP00000324857.5:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.743G>A
  hgvsp: ENSP00000350770.4:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.743G>A
  hgvsp: ENSP00000442040.1:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.743G>A
  hgvsp: ENSP00000446152.2:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.743G>A
  hgvsp: ENSP00000374084.2:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.743G>A
  hgvsp: ENSP00000346786.4:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.743G>A
  hgvsp: ENSP00000453661.1:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.743G>A
  hgvsp: ENSP00000374079.3:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.743G>A
  hgvsp: ENSP00000348276.3:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.743G>A
  hgvsp: ENSP00000374083.2:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.743G>A
  hgvsp: ENSP00000374076.3:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.743G>A
  hgvsp: ENSP00000452815.1:p.Gly248Asp
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly248Asp
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-48055310-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055310
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055310
    reference: chr 15
allele count: 1
allele frequency: 9.274545083563651e-6
allele num: 107822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.747+9A>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27046
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/15-48055320-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055320
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055320
    reference: chr 15
allele count: 1
allele frequency: 9.57725975443906e-6
allele num: 104414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.747+19C>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/15-48055324-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055324
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055324
    reference: chr 15
allele count: 3
allele frequency: 2.892904669148136e-5
allele num: 103702
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.747+23A>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16379
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-48055326-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055326
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055326
    reference: chr 15
allele count: 1
allele frequency: 9.735202492211838e-6
allele num: 102720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.747+25T>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22095
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/15-48055333-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055333
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055333
    reference: chr 15
allele count: 19
allele frequency: 1.889719923615531e-4
allele num: 100544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.747+32C>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23184
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9577
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10319
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

15-48055336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055336
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055336
    reference: chr 15
allele count: 1
allele frequency: 1.005308026379283e-5
allele num: 99472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.747+35G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11713
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

15-48055351-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055351
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055351
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 92284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.747+50G>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21188
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

15-48055996-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48055996
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48055996
    reference: chr 15
allele count: 3536
allele frequency: 2.918310417113712e-2
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.748-51A>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 8.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 8.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 9.75e1
  variant carriers: 2024
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 4.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 4.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 2.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 2.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 9.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 7.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 6.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 3.75e1
  variant carriers: 107
genotype quality: GenotypeQuality
num of homozygotes: 190
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

15-48056001-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056001
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056001
    reference: chr 15
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.748-46T>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

15-48056018-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056018
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056018
    reference: chr 15
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.748-29C>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

15-48056032-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056032
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056032
    reference: chr 15
allele count: 5
allele frequency: 4.121875618281343e-5
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.748-15C>G
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

15-48056037-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056037
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056037
    reference: chr 15
allele count: 17
allele frequency: 1.401322188700397e-4
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.748-10C>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

15-48056038-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056038
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056038
    reference: chr 15
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.748-9G>A
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-48056038-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056038
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056038
    reference: chr 15
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.748-9G>T
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

15-48056039-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056039
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056039
    reference: chr 15
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.748-8T>C
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.748-8T>C
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

15-48056047-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056047
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056047
    reference: chr 15
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.748G>T
  hgvsp: ENSP00000346786.4:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.748G>T
  hgvsp: ENSP00000442040.1:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.748G>T
  hgvsp: ENSP00000453661.1:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.748G>T
  hgvsp: ENSP00000374076.3:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.748G>T
  hgvsp: ENSP00000374079.3:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.748G>T
  hgvsp: ENSP00000324857.5:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.748G>T
  hgvsp: ENSP00000446152.2:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.748G>T
  hgvsp: ENSP00000374083.2:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.748G>T
  hgvsp: ENSP00000348276.3:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.748G>T
  hgvsp: ENSP00000452815.1:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.748G>T
  hgvsp: ENSP00000350770.4:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.748G>T
  hgvsp: ENSP00000374084.2:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala250Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-48056050-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056050
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056050
    reference: chr 15
allele count: 45
allele frequency: 3.707426386989405e-4
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.751G>A
  hgvsp: ENSP00000374079.3:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.751G>A
  hgvsp: ENSP00000446152.2:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.751G>A
  hgvsp: ENSP00000348276.3:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.751G>A
  hgvsp: ENSP00000324857.5:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.751G>A
  hgvsp: ENSP00000452815.1:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.751G>A
  hgvsp: ENSP00000374076.3:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.751G>A
  hgvsp: ENSP00000374084.2:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.751G>A
  hgvsp: ENSP00000374083.2:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.751G>A
  hgvsp: ENSP00000350770.4:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.751G>A
  hgvsp: ENSP00000453661.1:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.751G>A
  hgvsp: ENSP00000442040.1:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.751G>A
  hgvsp: ENSP00000346786.4:p.Val251Met
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val251Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

15-48056052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056052
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056052
    reference: chr 15
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.753G>A
  hgvsp: ENST00000354744.4:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.753G>A
  hgvsp: ENST00000389432.2:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.753G>A
  hgvsp: ENST00000558014.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.753G>A
  hgvsp: ENST00000389428.3:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.753G>A
  hgvsp: ENST00000389433.2:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.753G>A
  hgvsp: ENST00000389425.3:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.753G>A
  hgvsp: ENST00000536845.2:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.753G>A
  hgvsp: ENST00000355997.3:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.753G>A
  hgvsp: ENST00000358066.4:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.753G>A
  hgvsp: ENST00000316364.5:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.753G>A
  hgvsp: ENST00000558816.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.753G>A
  hgvsp: ENST00000537942.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val251Val
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-48056059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056059
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056059
    reference: chr 15
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.760C>T
  hgvsp: ENSP00000346786.4:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.760C>T
  hgvsp: ENSP00000374083.2:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.760C>T
  hgvsp: ENSP00000324857.5:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.760C>T
  hgvsp: ENSP00000374084.2:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.760C>T
  hgvsp: ENSP00000452815.1:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.760C>T
  hgvsp: ENSP00000374076.3:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.760C>T
  hgvsp: ENSP00000453661.1:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.760C>T
  hgvsp: ENSP00000446152.2:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.760C>T
  hgvsp: ENSP00000350770.4:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.760C>T
  hgvsp: ENSP00000348276.3:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.760C>T
  hgvsp: ENSP00000374079.3:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.760C>T
  hgvsp: ENSP00000442040.1:p.Arg254Cys
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg254Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

15-48056060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056060
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056060
    reference: chr 15
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.761G>A
  hgvsp: ENSP00000374079.3:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.761G>A
  hgvsp: ENSP00000374083.2:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.761G>A
  hgvsp: ENSP00000452815.1:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.761G>A
  hgvsp: ENSP00000442040.1:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.761G>A
  hgvsp: ENSP00000346786.4:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.761G>A
  hgvsp: ENSP00000453661.1:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.761G>A
  hgvsp: ENSP00000374076.3:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.761G>A
  hgvsp: ENSP00000350770.4:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.761G>A
  hgvsp: ENSP00000324857.5:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.761G>A
  hgvsp: ENSP00000348276.3:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.761G>A
  hgvsp: ENSP00000446152.2:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.761G>A
  hgvsp: ENSP00000374084.2:p.Arg254His
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg254His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-48056061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056061
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056061
    reference: chr 15
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.762C>T
  hgvsp: ENST00000389433.2:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.762C>T
  hgvsp: ENST00000389425.3:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.762C>T
  hgvsp: ENST00000354744.4:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.762C>T
  hgvsp: ENST00000558014.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.762C>T
  hgvsp: ENST00000558816.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.762C>T
  hgvsp: ENST00000389428.3:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.762C>T
  hgvsp: ENST00000355997.3:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.762C>T
  hgvsp: ENST00000536845.2:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.762C>T
  hgvsp: ENST00000358066.4:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.762C>T
  hgvsp: ENST00000316364.5:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.762C>T
  hgvsp: ENST00000537942.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.762C>T
  hgvsp: ENST00000389432.2:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg254Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

15-48056062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056062
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056062
    reference: chr 15
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.763G>A
  hgvsp: ENSP00000350770.4:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.763G>A
  hgvsp: ENSP00000452815.1:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.763G>A
  hgvsp: ENSP00000374076.3:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.763G>A
  hgvsp: ENSP00000348276.3:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.763G>A
  hgvsp: ENSP00000346786.4:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.763G>A
  hgvsp: ENSP00000453661.1:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.763G>A
  hgvsp: ENSP00000324857.5:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.763G>A
  hgvsp: ENSP00000374083.2:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.763G>A
  hgvsp: ENSP00000446152.2:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.763G>A
  hgvsp: ENSP00000374084.2:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.763G>A
  hgvsp: ENSP00000374079.3:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.763G>A
  hgvsp: ENSP00000442040.1:p.Val255Met
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val255Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

15-48056064-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056064
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056064
    reference: chr 15
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.765G>A
  hgvsp: ENST00000558816.1:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.765G>A
  hgvsp: ENST00000536845.2:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.765G>A
  hgvsp: ENST00000558014.1:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.765G>A
  hgvsp: ENST00000354744.4:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.765G>A
  hgvsp: ENST00000355997.3:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.765G>A
  hgvsp: ENST00000358066.4:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.765G>A
  hgvsp: ENST00000389433.2:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.765G>A
  hgvsp: ENST00000389425.3:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.765G>A
  hgvsp: ENST00000537942.1:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.765G>A
  hgvsp: ENST00000389428.3:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.765G>A
  hgvsp: ENST00000316364.5:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.765G>A
  hgvsp: ENST00000389432.2:c.765G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val255Val
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

15-48056066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056066
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056066
    reference: chr 15
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.767C>T
  hgvsp: ENSP00000442040.1:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.767C>T
  hgvsp: ENSP00000374083.2:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.767C>T
  hgvsp: ENSP00000348276.3:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.767C>T
  hgvsp: ENSP00000324857.5:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.767C>T
  hgvsp: ENSP00000453661.1:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.767C>T
  hgvsp: ENSP00000374076.3:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.767C>T
  hgvsp: ENSP00000346786.4:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.767C>T
  hgvsp: ENSP00000452815.1:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.767C>T
  hgvsp: ENSP00000350770.4:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.767C>T
  hgvsp: ENSP00000374079.3:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.767C>T
  hgvsp: ENSP00000374084.2:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.767C>T
  hgvsp: ENSP00000446152.2:p.Ala256Val
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala256Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

15-48056069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056069
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056069
    reference: chr 15
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.770G>A
  hgvsp: ENSP00000324857.5:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.770G>A
  hgvsp: ENSP00000374083.2:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.770G>A
  hgvsp: ENSP00000374084.2:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.770G>A
  hgvsp: ENSP00000348276.3:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.770G>A
  hgvsp: ENSP00000453661.1:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.770G>A
  hgvsp: ENSP00000442040.1:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.770G>A
  hgvsp: ENSP00000374076.3:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.770G>A
  hgvsp: ENSP00000374079.3:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.770G>A
  hgvsp: ENSP00000346786.4:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.770G>A
  hgvsp: ENSP00000350770.4:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.770G>A
  hgvsp: ENSP00000452815.1:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.770G>A
  hgvsp: ENSP00000446152.2:p.Arg257His
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg257His
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

15-48056071-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056071
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056071
    reference: chr 15
allele count: 4
allele frequency: 3.295110056675893e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.772A>G
  hgvsp: ENSP00000350770.4:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.772A>G
  hgvsp: ENSP00000374083.2:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.772A>G
  hgvsp: ENSP00000374079.3:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.772A>G
  hgvsp: ENSP00000374076.3:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.772A>G
  hgvsp: ENSP00000346786.4:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.772A>G
  hgvsp: ENSP00000348276.3:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.772A>G
  hgvsp: ENSP00000324857.5:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.772A>G
  hgvsp: ENSP00000374084.2:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.772A>G
  hgvsp: ENSP00000442040.1:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.772A>G
  hgvsp: ENSP00000453661.1:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.772A>G
  hgvsp: ENSP00000452815.1:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.772A>G
  hgvsp: ENSP00000446152.2:p.Ile258Val
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile258Val
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

15-48056073-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056073
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056073
    reference: chr 15
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.774A>G
  hgvsp: ENSP00000442040.1:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.774A>G
  hgvsp: ENSP00000374076.3:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.774A>G
  hgvsp: ENSP00000346786.4:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.774A>G
  hgvsp: ENSP00000374079.3:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.774A>G
  hgvsp: ENSP00000452815.1:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.774A>G
  hgvsp: ENSP00000350770.4:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.774A>G
  hgvsp: ENSP00000374083.2:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.774A>G
  hgvsp: ENSP00000324857.5:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.774A>G
  hgvsp: ENSP00000453661.1:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.774A>G
  hgvsp: ENSP00000374084.2:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.774A>G
  hgvsp: ENSP00000348276.3:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.774A>G
  hgvsp: ENSP00000446152.2:p.Ile258Met
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile258Met
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

15-48056082-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056082
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056082
    reference: chr 15
allele count: 65
allele frequency: 5.354465624330692e-4
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.783C>T
  hgvsp: ENST00000316364.5:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.783C>T
  hgvsp: ENST00000389428.3:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.783C>T
  hgvsp: ENST00000558816.1:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.783C>T
  hgvsp: ENST00000358066.4:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.783C>T
  hgvsp: ENST00000389432.2:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.783C>T
  hgvsp: ENST00000389425.3:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.783C>T
  hgvsp: ENST00000558014.1:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.783C>T
  hgvsp: ENST00000536845.2:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.783C>T
  hgvsp: ENST00000355997.3:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.783C>T
  hgvsp: ENST00000389433.2:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.783C>T
  hgvsp: ENST00000537942.1:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.783C>T
  hgvsp: ENST00000354744.4:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 9.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn261Asn
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

15-48056086-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 48056086
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 48056086
    reference: chr 15
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000442040
  ensembl transcript: ENST00000537942
  gene symbol: SEMA6D
  hgvsc: ENST00000537942.1:c.787A>G
  hgvsp: ENSP00000442040.1:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374076
  ensembl transcript: ENST00000389425
  gene symbol: SEMA6D
  hgvsc: ENST00000389425.3:c.787A>G
  hgvsp: ENSP00000374076.3:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374083
  ensembl transcript: ENST00000389432
  gene symbol: SEMA6D
  hgvsc: ENST00000389432.2:c.787A>G
  hgvsp: ENSP00000374083.2:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374079
  ensembl transcript: ENST00000389428
  gene symbol: SEMA6D
  hgvsc: ENST00000389428.3:c.787A>G
  hgvsp: ENSP00000374079.3:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000374084
  ensembl transcript: ENST00000389433
  gene symbol: SEMA6D
  hgvsc: ENST00000389433.2:c.787A>G
  hgvsp: ENSP00000374084.2:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000446152
  ensembl transcript: ENST00000536845
  gene symbol: SEMA6D
  hgvsc: ENST00000536845.2:c.787A>G
  hgvsp: ENSP00000446152.2:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000324857
  ensembl transcript: ENST00000316364
  gene symbol: SEMA6D
  hgvsc: ENST00000316364.5:c.787A>G
  hgvsp: ENSP00000324857.5:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000346786
  ensembl transcript: ENST00000354744
  gene symbol: SEMA6D
  hgvsc: ENST00000354744.4:c.787A>G
  hgvsp: ENSP00000346786.4:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000350770
  ensembl transcript: ENST00000358066
  gene symbol: SEMA6D
  hgvsc: ENST00000358066.4:c.787A>G
  hgvsp: ENSP00000350770.4:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000453661
  ensembl transcript: ENST00000558816
  gene symbol: SEMA6D
  hgvsc: ENST00000558816.1:c.787A>G
  hgvsp: ENSP00000453661.1:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000348276
  ensembl transcript: ENST00000355997
  gene symbol: SEMA6D
  hgvsc: ENST00000355997.3:c.787A>G
  hgvsp: ENSP00000348276.3:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137872
  ensembl protein: ENSP00000452815
  ensembl transcript: ENST00000558014
  gene symbol: SEMA6D
  hgvsc: ENST00000558014.1:c.787A>G
  hgvsp: ENSP00000452815.1:p.Met263Val
  variant of: http://identifiers.org/hgnc/16770
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met263Val
num of homozygotes: 0
reference allele: A

GenotypeDepth
all individuals: 5467
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5156
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5056
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3395
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1492
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2103
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1301
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41160
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1467
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 7.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16506
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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African
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QD
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MQ
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 5
allele frequency: 4.804920238324044e-4
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 4.09e-1

VQSLOD
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QD
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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SIO_000300: -2.33e-1

MQRankSum
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SIO_000300: 3.61e-1

DP
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SIO_000300: 2.834387e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.560000000000001e-2

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 164

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
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allele count: 160
allele frequency: 1.537574476263694e-2
allele num: 10406
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 5.999160117583539e-5
allele num: 66676
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.71e-2

MQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -5.9e-2

MQ
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SIO_000300: 5.975e1

VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.406e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999760019198464e-5
allele num: 66672
num of homozygotes: 0

Other
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African
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Latino
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

African
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European (Finnish)
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South Asian
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East Asian
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Latino
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Other
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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QD
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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QD
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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South Asian
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InbreedingCoeff
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FS
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VQSLOD
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QD
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.501997656883655e-5
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Other
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African
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European (Finnish)
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South Asian
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Latino
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DP
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Finnish)
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East Asian
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African
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Latino
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European (Non-Finnish)
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DP
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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African
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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FS
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QD
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-1

VQSLOD
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SIO_000300: -1.672e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.808064e6

FS
type: SiteQuality
SIO_000300: 1.2786e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.219e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.05e-1

GenotypeDepth
all individuals: 443
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.75e1
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GenotypeQuality
all individuals: 1154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507295309296997e-5
allele num: 66344
num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.329754069968826e-4
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.222792858889704e-4
allele num: 16356
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

MQRankSum
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SIO_000300: 1.32e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.873711e6

FS
type: SiteQuality
SIO_000300: 1.208e0

BaseQRankSum
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SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.84e0

GenotypeDepth
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bin: 7.75e1
variant carriers: 272

GenotypeQuality
all individuals: 1945
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 42022
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variant carriers: 3664

GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 5119
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2410
bin: 9.25e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 2720
allele frequency: 4.099843241287833e-2
allele num: 66344
num of homozygotes: 56

African
type: Population
allele count: 91
allele frequency: 8.797370456303171e-3
allele num: 10344
num of homozygotes: 1

South Asian
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allele count: 307
allele frequency: 1.876987038395696e-2
allele num: 16356
num of homozygotes: 11

European (Finnish)
type: Population
allele count: 315
allele frequency: 4.778519417475728e-2
allele num: 6592
num of homozygotes: 6

Other
type: Population
allele count: 37
allele frequency: 4.092920353982301e-2
allele num: 904
num of homozygotes: 1

East Asian
type: Population
allele count: 40
allele frequency: 4.667444574095682e-3
allele num: 8570
num of homozygotes: 0

Latino
type: Population
allele count: 255
allele frequency: 2.208174575684101e-2
allele num: 11548
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.208e0

DP
type: SiteQuality
SIO_000300: 2.873711e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

VQSLOD
type: SiteQuality
SIO_000300: 4.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.347e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

GenotypeDepth
all individuals: 1385
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 42022
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 143
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GenotypeQuality
all individuals: 1387
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 28
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1945
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GenotypeQuality
all individuals: 1827
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.667440061871617e-5
allele num: 10344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66344
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.113964294448521e-5
allele num: 16356
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 1.208e0

QD
type: SiteQuality
SIO_000300: 1.347e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.873711e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.84e0

GenotypeDepth
all individuals: 5074
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variant carriers: 1

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 766
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 423
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GenotypeQuality
all individuals: 5375
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 190
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 445
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GenotypeQuality
all individuals: 1219
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507522537461935e-5
allele num: 66334
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10346
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South Asian
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allele count: 0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

QD
type: SiteQuality
SIO_000300: 1.618e1

FS
type: SiteQuality
SIO_000300: 2.475e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
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SIO_000300: -1.13e0

MQRankSum
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SIO_000300: -1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.18e-1

DP
type: SiteQuality
SIO_000300: 2.816041e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 2154
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1212
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variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.933488012374323e-4
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
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VQSLOD
type: SiteQuality
SIO_000300: 7.86e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.814046e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1912
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GenotypeQuality
all individuals: 291
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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East Asian
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South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

BaseQRankSum
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MQRankSum
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.462e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 221
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1989
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variant carriers: 0

GenotypeQuality
all individuals: 2142
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66250
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.139489194499017e-5
allele num: 16288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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African
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allele count: 0
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allele num: 10330
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 5.905e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.464e1

VQSLOD
type: SiteQuality
SIO_000300: -9.706e-1

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 1
allele frequency: 6.160670280926565e-5
allele num: 16232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511441613010489e-5
allele num: 66162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: 4.8e-3

DP
type: SiteQuality
SIO_000300: 2.797596e6

ClippingRankSum
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SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50016
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.302889405513119e-5
allele num: 12044
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -2.7e-3

MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.021183e6

ClippingRankSum
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SIO_000300: -2.001e0

QD
type: SiteQuality
SIO_000300: 3.97e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 179
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.360160490913382e-4
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50728
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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VQSLOD
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FS
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SIO_000300: 1.054e0

MQRankSum
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SIO_000300: -2.44e-1

InbreedingCoeff
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SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.099e1

DP
type: SiteQuality
SIO_000300: 1.090091e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.123268155429712e-5
allele num: 56154
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.766e1

QD
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 4.0963e1

InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

VQSLOD
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BaseQRankSum
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SIO_000300: -2.461e0

ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 1.291001e6

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ReadPosRankSum
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SIO_000300: -1.848e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 519
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.177226213803614e-4
allele num: 9186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57278
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.213e1

ClippingRankSum
type: SiteQuality
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FS
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BaseQRankSum
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SIO_000300: 4.45e0

ReadPosRankSum
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SIO_000300: 2.08e0

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.317485e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.793016778751444e-5
allele num: 58884
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10642
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 5.443e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.577934168586487e-5
allele num: 63374
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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VQSLOD
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FS
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.829e1

ReadPosRankSum
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SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 1.447998e6

GenotypeDepth
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variant carriers: 32

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 240

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2799
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 132
allele frequency: 2.074949698189135e-3
allele num: 63616
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.496503496503497e-3
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.557217747091165e-4
allele num: 15642
num of homozygotes: 0

East Asian
type: Population
allele count: 27
allele frequency: 3.284671532846715e-3
allele num: 8220
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.04040404040404e-4
allele num: 9900
num of homozygotes: 0

Latino
type: Population
allele count: 70
allele frequency: 6.269030986924592e-3
allele num: 11166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.559089491736826e-4
allele num: 6414
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.277e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
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SIO_000300: -2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 1.458459e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 2599
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 648
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.939746111210442e-5
allele num: 11186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.221e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
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SIO_000300: 1.384e1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

DP
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SIO_000300: 1.460951e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.065e0

FS
type: SiteQuality
SIO_000300: 1.172e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2914
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64556
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.258970162407151e-4
allele num: 15886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.475817e6

QD
type: SiteQuality
SIO_000300: 8.630000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.836000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 7.262e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.296e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeDepth
all individuals: 150
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 167
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variant carriers: 0

GenotypeDepth
all individuals: 125
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GenotypeDepth
all individuals: 178
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GenotypeQuality
all individuals: 2612
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 142
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GenotypeQuality
all individuals: 422
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64534
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.200192030724916e-4
allele num: 8332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.475542e6

FS
type: SiteQuality
SIO_000300: 1.254e1

VQSLOD
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SIO_000300: -2.702e0

BaseQRankSum
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SIO_000300: -2.231e0

QD
type: SiteQuality
SIO_000300: 1.387e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.707e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 150
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 99
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GenotypeQuality
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GenotypeQuality
all individuals: 2895
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2613
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GenotypeQuality
all individuals: 227
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GenotypeQuality
all individuals: 424
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.302785831337451e-5
allele num: 15866
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.705e0

FS
type: SiteQuality
SIO_000300: 1.209e0

DP
type: SiteQuality
SIO_000300: 1.474643e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 14
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 705
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GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553277415346381e-5
allele num: 64380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.472337e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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SIO_000300: 1.3e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.612e0

BaseQRankSum
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SIO_000300: 2.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 109
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GenotypeQuality
all individuals: 267
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.890469416785207e-5
allele num: 11248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64398
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

DP
type: SiteQuality
SIO_000300: 1.473131e6

FS
type: SiteQuality
SIO_000300: 8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.315e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
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GenotypeDepth
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bin: 4.75e1
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GenotypeDepth
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GenotypeDepth
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bin: 3.25e1
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GenotypeDepth
all individuals: 2533
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 2728
bin: 6.75e1
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GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.433350488934638e-5
allele num: 15544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.48e-1

FS
type: SiteQuality
SIO_000300: 7.578e0

QD
type: SiteQuality
SIO_000300: 1.166e1

DP
type: SiteQuality
SIO_000300: 1.443928e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.57e-1

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15462
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.002002002002002e-4
allele num: 9990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.169e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 1.65e0

MQRankSum
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SIO_000300: 8.26e-1

DP
type: SiteQuality
SIO_000300: 1.435019e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 2.024e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.173e0

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 659
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
all individuals: 2471
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.628081143564195e-5
allele num: 61422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.9e0

VQSLOD
type: SiteQuality
SIO_000300: -1.07e0

ReadPosRankSum
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SIO_000300: 6.840000000000001e-1

MQ
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SIO_000300: 5.695e1

BaseQRankSum
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SIO_000300: -3.148e0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.379463e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1994
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6933653943848e-5
allele num: 59054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.268e0

DP
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InbreedingCoeff
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SIO_000300: -1.5e-3

ReadPosRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: 7.9e-2

BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13366
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.747518523696351e-5
allele num: 57224
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 788
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.11e0

QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 329
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 56794
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.166561114629512e-4
allele num: 9474
num of homozygotes: 0

Other
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South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.678e1

VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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DP
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SIO_000300: 1.1373e6

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 17926
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.778346848769384e-5
allele num: 56232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 6.28e-1

VQSLOD
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SIO_000300: -1.081e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

DP
type: SiteQuality
SIO_000300: 1.10178e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.79e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

QD
type: SiteQuality
SIO_000300: 1.828e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 509
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.497477931904161e-3
allele num: 12688
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 6.33e-1

MQRankSum
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DP
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VQSLOD
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MQ
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BaseQRankSum
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SIO_000300: -2.564e0

InbreedingCoeff
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SIO_000300: -3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
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SIO_000300: 1.233e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.42897970848814e-4
allele num: 6998
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5892
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54388
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -2.6e-3

FS
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SIO_000300: 0.0e0

QD
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MQRankSum
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -3.512e0

ClippingRankSum
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SIO_000300: 4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.76e-1

DP
type: SiteQuality
SIO_000300: 1.041604e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50242
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.627e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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SIO_000300: 9.99506e5

QD
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SIO_000300: 2.607e1

MQRankSum
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SIO_000300: -1.393e0

ClippingRankSum
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SIO_000300: 1.39e0

ReadPosRankSum
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SIO_000300: -1.393e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 2493
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variant carriers: 45

GenotypeQuality
all individuals: 244
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3304

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1605
bin: 9.25e1
variant carriers: 9

Latino
type: Population
allele count: 73
allele frequency: 6.306150656530753e-3
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 18
allele frequency: 1.986754966887417e-2
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.537205081669691e-4
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 603
allele frequency: 6.979166666666667e-2
allele num: 8640
num of homozygotes: 19

African
type: Population
allele count: 1241
allele frequency: 1.200890265144184e-1
allele num: 10334
num of homozygotes: 74

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.302708220741008e-4
allele num: 66612
num of homozygotes: 1

South Asian
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allele count: 1576
allele frequency: 9.559626349629989e-2
allele num: 16486
num of homozygotes: 96

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

DP
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SIO_000300: 3.684713e6

ClippingRankSum
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SIO_000300: -2.05e-1

FS
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 8.400000000000001e-2

MQ
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SIO_000300: 5.97e1

VQSLOD
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SIO_000300: 7.08e0

QD
type: SiteQuality
SIO_000300: 1.442e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1194
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele frequency: 0.0e0
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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FS
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DP
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

African
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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QD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.99880023995201e-5
allele num: 66680
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.251e1

MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
all individuals: 3652
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
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variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 7.75e1
variant carriers: 0

Latino
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allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.61849710982659e-3
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

VQSLOD
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DP
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SIO_000300: 3.549146e6

ReadPosRankSum
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SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

GenotypeDepth
all individuals: 5614
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1729
bin: 9.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

VQSLOD
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SIO_000300: 1.87e0

BaseQRankSum
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SIO_000300: 2.17e0

QD
type: SiteQuality
SIO_000300: 1.141e1

DP
type: SiteQuality
SIO_000300: 3.547485e6

FS
type: SiteQuality
SIO_000300: 3.487e0

ClippingRankSum
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SIO_000300: 5.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1729
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

BaseQRankSum
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SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 3.547485e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.47e-1

FS
type: SiteQuality
SIO_000300: 3.487e0

MQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 4034
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.547308e6

VQSLOD
type: SiteQuality
SIO_000300: -6.766e0

BaseQRankSum
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SIO_000300: 8.76e0

MQRankSum
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SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 5.78e1

ReadPosRankSum
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SIO_000300: -3.401e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.45e0

FS
type: SiteQuality
SIO_000300: 1.886e0

QD
type: SiteQuality
SIO_000300: 1.322e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 2627
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variant carriers: 0

GenotypeDepth
all individuals: 4513
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variant carriers: 0

GenotypeDepth
all individuals: 1947
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GenotypeDepth
all individuals: 3653
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GenotypeDepth
all individuals: 1048
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variant carriers: 0

GenotypeQuality
all individuals: 1727
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1946
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4046
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 47063
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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SIO_000300: -2.673e0

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 4035
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 45

Latino
type: Population
allele count: 7
allele frequency: 6.045949214026602e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.496807266840543e-4
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

African
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allele count: 5
allele frequency: 4.807692307692308e-4
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.12e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
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ClippingRankSum
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SIO_000300: -2.33e-1

QD
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DP
type: SiteQuality
SIO_000300: 3.550982e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1945
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1218
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

FS
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DP
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InbreedingCoeff
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MQ
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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Other
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DP
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QD
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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Latino
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DP
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FS
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QD
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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South Asian
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ReadPosRankSum
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MQ
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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South Asian
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ClippingRankSum
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DP
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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QD
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.33e-1

DP
type: SiteQuality
SIO_000300: 3.545294e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

FS
type: SiteQuality
SIO_000300: 2.104e0

QD
type: SiteQuality
SIO_000300: 1.39e1

MQRankSum
type: SiteQuality
SIO_000300: -1.261e0

GenotypeDepth
all individuals: 2628
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5618
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1047
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4521
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4087
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47057
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

DP
type: SiteQuality
SIO_000300: 3.545285e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.195e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.183e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

FS
type: SiteQuality
SIO_000300: 6.047e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.862e1

GenotypeDepth
all individuals: 5659
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4711
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1047
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1412
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4087
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47056
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.321e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
SIO_000300: 1.291e1

VQSLOD
type: SiteQuality
SIO_000300: 6.45e-1

DP
type: SiteQuality
SIO_000300: 3.545181e6

GenotypeDepth
all individuals: 4518
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1945
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3515
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5657
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4080
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47071
bin: 9.75e1
variant carriers: 65

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 60
allele frequency: 3.633720930232558e-3
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 3.549124e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeDepth
all individuals: 4718
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3662
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3970
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 6124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 7.25e1
variant carriers: 0