11-45950325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950325
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950325
    reference: chr 11
allele count: 5
allele frequency: 4.145112083830747e-5
allele num: 120624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2095C>T
  hgvsp: ENSP00000385235.1:p.Arg699Cys
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2002C>T
  hgvsp: ENSP00000431932.1:p.Arg668Cys
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.1972C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2095C>T
  hgvsp: ENSP00000324570.5:p.Arg699Cys
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2002C>T
  hgvsp: ENSP00000445044.1:p.Arg668Cys
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.179C>T
  hgvsp: ENST00000531847.1:c.179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1166C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2095C>T
  hgvsp: ENSP00000432869.1:p.Arg699Cys
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6914
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg699Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

11-45950326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950326
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950326
    reference: chr 11
allele count: 8
allele frequency: 6.635259770420012e-5
allele num: 120568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2096G>A
  hgvsp: ENSP00000324570.5:p.Arg699His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2096G>A
  hgvsp: ENSP00000432869.1:p.Arg699His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2003G>A
  hgvsp: ENSP00000445044.1:p.Arg668His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2096G>A
  hgvsp: ENSP00000385235.1:p.Arg699His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1167G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.180G>A
  hgvsp: ENSP00000434325.1:p.Ala61Thr
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2003G>A
  hgvsp: ENSP00000431932.1:p.Arg668His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.1973G>A
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg699His
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-45950336-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950336
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950336
    reference: chr 11
allele count: 1
allele frequency: 8.310065150910783e-6
allele num: 120336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2106G>T
  hgvsp: ENST00000401752.1:c.2106G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1177G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.1983G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2106G>T
  hgvsp: ENST00000531526.1:c.2106G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2013G>T
  hgvsp: ENST00000536139.1:c.2013G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.190G>T
  hgvsp: ENSP00000434325.1:p.Gly64Val
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2106G>T
  hgvsp: ENST00000325468.5:c.2106G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2013G>T
  hgvsp: ENST00000529052.1:c.2013G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6884
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly64Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

11-45950340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950340
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950340
    reference: chr 11
allele count: 1
allele frequency: 8.320990530712775e-6
allele num: 120178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2110G>A
  hgvsp: ENSP00000324570.5:p.Ala704Thr
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.194G>A
  hgvsp: ENST00000531847.1:c.194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2110G>A
  hgvsp: ENSP00000385235.1:p.Ala704Thr
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.1987G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2017G>A
  hgvsp: ENSP00000445044.1:p.Ala673Thr
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1181G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2110G>A
  hgvsp: ENSP00000432869.1:p.Ala704Thr
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2017G>A
  hgvsp: ENSP00000431932.1:p.Ala673Thr
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6848
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala704Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/11-45950354-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950354
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950354
    reference: chr 11
allele count: 1
allele frequency: 8.404208827780952e-6
allele num: 118988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2031C>A
  hgvsp: ENSP00000445044.1:p.Tyr677Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2124C>A
  hgvsp: ENSP00000385235.1:p.Tyr708Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2031C>A
  hgvsp: ENSP00000431932.1:p.Tyr677Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2124C>A
  hgvsp: ENSP00000324570.5:p.Tyr708Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.208C>A
  hgvsp: ENSP00000434325.1:p.Thr70Asn
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2124C>A
  hgvsp: ENSP00000432869.1:p.Tyr708Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2001C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1195C>A
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr708Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

11-45950359-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950359
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950359
    reference: chr 11
allele count: 10
allele frequency: 8.436540343535923e-5
allele num: 118532
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2129C>G
  hgvsp: ENSP00000432869.1:p.Pro710Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2129C>G
  hgvsp: ENSP00000324570.5:p.Pro710Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.213C>G
  hgvsp: ENSP00000434325.1:p.Gln72Glu
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2036C>G
  hgvsp: ENSP00000431932.1:p.Pro679Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2129C>G
  hgvsp: ENSP00000385235.1:p.Pro710Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1200C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2006C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2036C>G
  hgvsp: ENSP00000445044.1:p.Pro679Arg
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6946
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro710Arg
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

11-45950360-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950360
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950360
    reference: chr 11
allele count: 1
allele frequency: 8.435970980259829e-6
allele num: 118540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1201A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2130A>G
  hgvsp: ENST00000325468.5:c.2130A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2007A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.214A>G
  hgvsp: ENSP00000434325.1:p.Gln72Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2037A>G
  hgvsp: ENST00000536139.1:c.2037A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2037A>G
  hgvsp: ENST00000529052.1:c.2037A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2130A>G
  hgvsp: ENST00000401752.1:c.2130A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2130A>G
  hgvsp: ENST00000531526.1:c.2130A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln72Arg
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/11-45950362-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950362
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950362
    reference: chr 11
allele count: 1
allele frequency: 8.442808415791428e-6
allele num: 118444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2132C>A
  hgvsp: ENSP00000324570.5:p.Ala711Asp
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2009C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.216C>A
  hgvsp: ENSP00000434325.1:p.Pro73Thr
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2039C>A
  hgvsp: ENSP00000431932.1:p.Ala680Asp
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2039C>A
  hgvsp: ENSP00000445044.1:p.Ala680Asp
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2132C>A
  hgvsp: ENSP00000385235.1:p.Ala711Asp
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1203C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2132C>A
  hgvsp: ENSP00000432869.1:p.Ala711Asp
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala711Asp
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-45950370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950370
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950370
    reference: chr 11
allele count: 1
allele frequency: 8.530530769624486e-6
allele num: 117226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1211C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2047C>T
  hgvsp: ENSP00000431932.1:p.Gln683Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2017C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2140C>T
  hgvsp: ENSP00000324570.5:p.Gln714Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2140C>T
  hgvsp: ENSP00000432869.1:p.Gln714Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.224C>T
  hgvsp: ENST00000531847.1:c.224C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2140C>T
  hgvsp: ENSP00000385235.1:p.Gln714Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2047C>T
  hgvsp: ENSP00000445044.1:p.Gln683Ter
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln714Ter
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/11-45950374-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950374
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950374
    reference: chr 11
allele count: 2
allele frequency: 1.713913550200528e-5
allele num: 116692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.228C>A
  hgvsp: ENSP00000434325.1:p.Pro77Thr
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2021C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2144C>A
  hgvsp: ENSP00000324570.5:p.Pro715His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2051C>A
  hgvsp: ENSP00000445044.1:p.Pro684His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2144C>A
  hgvsp: ENSP00000385235.1:p.Pro715His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1215C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2144C>A
  hgvsp: ENSP00000432869.1:p.Pro715His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2051C>A
  hgvsp: ENSP00000431932.1:p.Pro684His
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22300
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro715His
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

11-45950376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950376
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950376
    reference: chr 11
allele count: 1
allele frequency: 8.613857974709713e-6
allele num: 116092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1217C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2053C>T
  hgvsp: ENSP00000445044.1:p.Gln685Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2053C>T
  hgvsp: ENSP00000431932.1:p.Gln685Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2146C>T
  hgvsp: ENSP00000385235.1:p.Gln716Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2146C>T
  hgvsp: ENSP00000324570.5:p.Gln716Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.230C>T
  hgvsp: ENST00000531847.1:c.230C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2023C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2146C>T
  hgvsp: ENSP00000432869.1:p.Gln716Ter
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44965
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln716Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

11-45950378-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950378
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950378
    reference: chr 11
allele count: 2
allele frequency: 1.725387349459954e-5
allele num: 115916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2025G>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.232G>C
  hgvsp: ENSP00000434325.1:p.Arg78Thr
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2148G>C
  hgvsp: ENSP00000385235.1:p.Gln716His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2055G>C
  hgvsp: ENSP00000445044.1:p.Gln685His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2148G>C
  hgvsp: ENSP00000324570.5:p.Gln716His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2148G>C
  hgvsp: ENSP00000432869.1:p.Gln716His
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1219G>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2055G>C
  hgvsp: ENSP00000431932.1:p.Gln685His
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3965
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln716His
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

11-45950383-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950383
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950383
    reference: chr 11
allele count: 1
allele frequency: 8.777627582816916e-6
allele num: 113926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.237C>G
  hgvsp: ENSP00000434325.1:p.Leu80Val
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2153C>G
  hgvsp: ENSP00000324570.5:p.Pro718Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2060C>G
  hgvsp: ENSP00000431932.1:p.Pro687Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2153C>G
  hgvsp: ENSP00000385235.1:p.Pro718Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2060C>G
  hgvsp: ENSP00000445044.1:p.Pro687Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1224C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2153C>G
  hgvsp: ENSP00000432869.1:p.Pro718Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2030C>G
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24634
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro718Arg
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

11-45950386-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950386
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950386
    reference: chr 11
allele count: 1
allele frequency: 8.782715615668365e-6
allele num: 113860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2033C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2156C>G
  hgvsp: ENSP00000432869.1:p.Ala719Gly
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2156C>G
  hgvsp: ENSP00000385235.1:p.Ala719Gly
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1227C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.240C>G
  hgvsp: ENSP00000434325.1:p.Pro81Ala
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2063C>G
  hgvsp: ENSP00000431932.1:p.Ala688Gly
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2156C>G
  hgvsp: ENSP00000324570.5:p.Ala719Gly
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2063C>G
  hgvsp: ENSP00000445044.1:p.Ala688Gly
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24643
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala719Gly
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

11-45950388-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950388
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950388
    reference: chr 11
allele count: 8
allele frequency: 7.058532883940073e-5
allele num: 113338
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2158C>T
  hgvsp: ENSP00000432869.1:p.Arg720Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2035C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1229C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.242C>T
  hgvsp: ENST00000531847.1:c.242C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2158C>T
  hgvsp: ENSP00000385235.1:p.Arg720Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2065C>T
  hgvsp: ENSP00000445044.1:p.Arg689Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2065C>T
  hgvsp: ENSP00000431932.1:p.Arg689Ter
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2158C>T
  hgvsp: ENSP00000324570.5:p.Arg720Ter
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20780
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6415
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42978
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 5947
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg720Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

11-45950389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950389
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950389
    reference: chr 11
allele count: 4
allele frequency: 3.562331902463353e-5
allele num: 112286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2036G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2066G>A
  hgvsp: ENSP00000445044.1:p.Arg689Gln
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2159G>A
  hgvsp: ENSP00000324570.5:p.Arg720Gln
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.243G>A
  hgvsp: ENSP00000434325.1:p.Glu82Lys
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2159G>A
  hgvsp: ENSP00000385235.1:p.Arg720Gln
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2066G>A
  hgvsp: ENSP00000431932.1:p.Arg689Gln
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1230G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2159G>A
  hgvsp: ENSP00000432869.1:p.Arg720Gln
  variant of: http://identifiers.org/hgnc/16522
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg720Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-45950393-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950393
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950393
    reference: chr 11
allele count: 6
allele frequency: 5.357238522116466e-5
allele num: 111998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2163C>A
  hgvsp: ENST00000401752.1:c.2163C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2070C>A
  hgvsp: ENST00000529052.1:c.2070C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.247C>A
  hgvsp: ENSP00000434325.1:p.Ala83Asp
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2163C>A
  hgvsp: ENST00000531526.1:c.2163C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2163C>A
  hgvsp: ENST00000325468.5:c.2163C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2070C>A
  hgvsp: ENST00000536139.1:c.2070C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2040C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1234C>A
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6355
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala83Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-45950393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950393
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950393
    reference: chr 11
allele count: 7
allele frequency: 6.250111609135878e-5
allele num: 111998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.247C>T
  hgvsp: ENSP00000434325.1:p.Ala83Val
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.2163C>T
  hgvsp: ENST00000401752.1:c.2163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.2070C>T
  hgvsp: ENST00000529052.1:c.2070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.2070C>T
  hgvsp: ENST00000536139.1:c.2070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2040C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.2163C>T
  hgvsp: ENST00000531526.1:c.2163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1234C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.2163C>T
  hgvsp: ENST00000325468.5:c.2163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala83Val
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

11-45950398-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950398
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950398
    reference: chr 11
allele count: 1
allele frequency: 9.252234414611129e-6
allele num: 108082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1239G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*2G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*2G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*2G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2045G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*2G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.252G>T
  hgvsp: ENSP00000434325.1:p.Ala85Ser
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*2G>T
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala85Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD

11-45950402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950402
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950402
    reference: chr 11
allele count: 1
allele frequency: 9.432182607055272e-6
allele num: 106020
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*6G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1243G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2049G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.256G>A
  hgvsp: ENSP00000434325.1:p.Gly86Glu
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21201
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36086
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly86Glu
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

11-45950403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950403
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950403
    reference: chr 11
allele count: 1
allele frequency: 9.481908518546613e-6
allele num: 105464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*7G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.257G>A
  hgvsp: ENST00000531847.1:c.257G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1244G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2050G>A
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10538
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly86Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/11-45950404-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950404
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950404
    reference: chr 11
allele count: 1
allele frequency: 9.512213682368161e-6
allele num: 105128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*8C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*8C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.258C>A
  hgvsp: ENSP00000434325.1:p.Pro87Thr
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*8C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*8C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*8C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1245C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2051C>A
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20819
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro87Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

11-45950405-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950405
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950405
    reference: chr 11
allele count: 1
allele frequency: 9.516921085690357e-6
allele num: 105076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2052C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*9C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*9C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*9C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.259C>G
  hgvsp: ENSP00000434325.1:p.Pro87Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*9C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1246C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*9C>G
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4601
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10744
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro87Arg
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-45950405-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950405
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950405
    reference: chr 11
allele count: 32
allele frequency: 3.045414747420914e-4
allele num: 105076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2052C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*9C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1246C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.259C>T
  hgvsp: ENSP00000434325.1:p.Pro87Leu
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6320
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20795
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10744
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro87Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

11-45950406-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950406
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950406
    reference: chr 11
allele count: 29
allele frequency: 2.765908744086678e-4
allele num: 104848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.260G>A
  hgvsp: ENST00000531847.1:c.260G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*10G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2053G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1247G>A
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17978
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20799
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro87Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

11-45950406-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950406
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950406
    reference: chr 11
allele count: 1
allele frequency: 9.537616358919578e-6
allele num: 104848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1247G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*10G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*10G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2053G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.260G>T
  hgvsp: ENST00000531847.1:c.260G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*10G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*10G>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*10G>T
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro87Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-45950408-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950408
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950408
    reference: chr 11
allele count: 7
allele frequency: 6.753367035850732e-5
allele num: 103652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2055C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*12C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1249C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*12C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*12C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.262C>T
  hgvsp: ENSP00000434325.1:p.Ala88Val
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*12C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*12C>T
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6838
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala88Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

11-45950409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950409
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950409
    reference: chr 11
allele count: 9
allele frequency: 8.705240554813998e-5
allele num: 103386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1250G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.263G>A
  hgvsp: ENST00000531847.1:c.263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*13G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2056G>A
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19921
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18081
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala88Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-45950412-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950412
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950412
    reference: chr 11
allele count: 15
allele frequency: 1.466791832903074e-4
allele num: 102264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*16G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.266G>A
  hgvsp: ENST00000531847.1:c.266G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2059G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1253G>A
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17755
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12737
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu89Leu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-45950418-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950418
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950418
    reference: chr 11
allele count: 1
allele frequency: 1.012145748987854e-5
allele num: 98800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*22C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2065C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.272C>A
  hgvsp: ENST00000531847.1:c.272C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*22C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*22C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*22C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*22C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1259C>A
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17575
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3761
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu91Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

11-45950419-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950419
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950418
    reference: chr 11
allele count: 2
allele frequency: 2.024906348081401e-5
allele num: 98770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.274delT
  hgvsp: ENSP00000434325.1:p.Ile92ThrfsTer2
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*24delT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*24delT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2067delT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*24delT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*24delT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*24delT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1261delT
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9479
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17535
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile92ThrfsTer2
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: AT
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

11-45950420-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950420
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950420
    reference: chr 11
allele count: 1
allele frequency: 1.018350679239903e-5
allele num: 98198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1261T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2067T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.274T>C
  hgvsp: ENSP00000434325.1:p.Ile92Thr
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*24T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2465
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile92Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

11-45950427-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950427
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950427
    reference: chr 11
allele count: 2
allele frequency: 2.120081411126187e-5
allele num: 94336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*31A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1268A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*31A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*31A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.281A>G
  hgvsp: ENST00000531847.1:c.281A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*31A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*31A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2074A>G
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala94Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

11-45950428-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950428
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950428
    reference: chr 11
allele count: 2633
allele frequency: 2.815139527424356e-2
allele num: 93530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*32T>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*32T>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*32T>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1269T>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.282T>A
  hgvsp: ENSP00000434325.1:p.Leu95Met
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*32T>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2075T>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*32T>A
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10348
  bin: 7.5e0
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 1.75e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 3.25e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 13131
  bin: 2.25e1
  variant carriers: 521
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13050
  bin: 1.25e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 14235
  bin: 2.75e1
  variant carriers: 467
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 9.75e1
  variant carriers: 2532
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 1.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 7
hgvs: p.Leu95Met
num of homozygotes: 43
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-45950428-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950428
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950428
    reference: chr 11
allele count: 1
allele frequency: 1.069175665561852e-5
allele num: 93530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*32T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*32T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2075T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*32T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*32T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.282T>C
  hgvsp: ENST00000531847.1:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*32T>C
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1269T>C
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu95Leu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

11-45950434-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950434
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950434
    reference: chr 11
allele count: 20
allele frequency: 2.266391677809759e-4
allele num: 88246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*38A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.288A>G
  hgvsp: ENSP00000434325.1:p.Arg97Gly
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*38A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*38A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*38A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1275A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*38A>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2081A>G
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10799
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12015
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16135
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11990
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4212
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg97Gly
num of homozygotes: 1
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

11-45950444-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950444
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950444
    reference: chr 11
allele count: 1
allele frequency: 1.242050874403816e-5
allele num: 80512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2091G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1285G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.298G>A
  hgvsp: ENSP00000434325.1:p.Gly100Asp
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*48G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8258
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6001
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly100Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/11-45950448-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950448
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950448
    reference: chr 11
allele count: 7
allele frequency: 9.322395056467078e-5
allele num: 75088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*52C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2095C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.302C>A
  hgvsp: ENSP00000434325.1:p.Asn101Lys
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*52C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*52C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1289C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*52C>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*52C>A
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn101Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

11-45950453-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950453
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950453
    reference: chr 11
allele count: 1
allele frequency: 1.488892859269847e-5
allele num: 67164
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*57C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1294C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.307C>G
  hgvsp: ENSP00000434325.1:p.Pro103Arg
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*57C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*57C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*57C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2100C>G
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*57C>G
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21083
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32374
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10318
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro103Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

11-45950453-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950453
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950453
    reference: chr 11
allele count: 1
allele frequency: 1.488892859269847e-5
allele num: 67164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1294C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*57C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*57C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*57C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*57C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.307C>T
  hgvsp: ENSP00000434325.1:p.Pro103Leu
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2100C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*57C>T
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21083
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro103Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

11-45950454-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950454
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950454
    reference: chr 11
allele count: 1
allele frequency: 1.49293840136156e-5
allele num: 66982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*58C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.308C>T
  hgvsp: ENST00000531847.1:c.308C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1295C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*58C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*58C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*58C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2101C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*58C>T
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro103Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

11-45950457-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950457
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950457
    reference: chr 11
allele count: 5
allele frequency: 7.980591202196259e-5
allele num: 62652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2104C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*61C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1298C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*61C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.311C>T
  hgvsp: ENST00000531847.1:c.311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*61C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*61C>T
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*61C>T
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20637
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11916
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser104Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

11-45950458-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950458
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950458
    reference: chr 11
allele count: 4
allele frequency: 6.931207762952694e-5
allele num: 57710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*62G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1299G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*62G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*62G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.312G>A
  hgvsp: ENSP00000434325.1:p.Ala105Thr
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*62G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2105G>A
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*62G>A
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16255
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19898
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13513
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala105Thr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

11-45950464-CCTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950464
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950461
    reference: chr 11
allele count: 1
allele frequency: 2.110060769750169e-5
allele num: 47392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*71_*73delGCT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2114_2116delGCT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*71_*73delGCT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1308_1310delGCT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*71_*73delGCT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.321_323delGCT
  hgvsp: ENSP00000434325.1:p.Ala108del
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*71_*73delGCT
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*71_*73delGCT
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16837
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27871
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala108del
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: CCTG
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

11-45950471-TTTAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45950471
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45950466
    reference: chr 11
allele count: 2
allele frequency: 6.993006993006993e-5
allele num: 28600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000445044
  ensembl transcript: ENST00000536139
  gene symbol: GYLTL1B
  hgvsc: ENST00000536139.1:c.*79_*83delAATTA
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000432869
  ensembl transcript: ENST00000531526
  gene symbol: GYLTL1B
  hgvsc: ENST00000531526.1:c.*79_*83delAATTA
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000385235
  ensembl transcript: ENST00000401752
  gene symbol: GYLTL1B
  hgvsc: ENST00000401752.1:c.*79_*83delAATTA
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000528236
  gene symbol: GYLTL1B
  hgvsc: ENST00000528236.1:n.2122_2126delAATTA
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000431932
  ensembl transcript: ENST00000529052
  gene symbol: GYLTL1B
  hgvsc: ENST00000529052.1:c.*79_*83delAATTA
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000434325
  ensembl transcript: ENST00000531847
  gene symbol: GYLTL1B
  hgvsc: ENST00000531847.1:c.329_*4delAATTA
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165905
  ensembl transcript: ENST00000530437
  gene symbol: GYLTL1B
  hgvsc: ENST00000530437.1:n.1316_1320delAATTA
  variant of: http://identifiers.org/hgnc/16522
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000165905
  ensembl protein: ENSP00000324570
  ensembl transcript: ENST00000325468
  gene symbol: GYLTL1B
  hgvsc: ENST00000325468.5:c.*79_*83delAATTA
  variant of: http://identifiers.org/hgnc/16522
canonical: false
consequence: coding sequence
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26219
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: TTTAAA
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

11-45955472-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955472
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955472
    reference: chr 11
allele count: 1
allele frequency: 9.049773755656109e-6
allele num: 110500
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*47C>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4356C>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*47C>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*47C>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*180C>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*368C>G
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4703
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4023
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

11-45955475-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955475
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955475
    reference: chr 11
allele count: 36
allele frequency: 3.257859586251832e-4
allele num: 110502
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*44G>C
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*365G>C
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*44G>C
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*177G>C
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4353G>C
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*44G>C
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8729
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23937
  bin: 9.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4008
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

11-45955483-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955483
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955483
    reference: chr 11
allele count: 396
allele frequency: 3.582672891108457e-3
allele num: 110532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*169G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*357G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*36G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*36G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4345G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*36G>A
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 4.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 5.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 6.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 4.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 5.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 6.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7827
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4674
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4058
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 2
num of homozygotes: 2
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

11-45955486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955486
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955486
    reference: chr 11
allele count: 8
allele frequency: 7.237199203908088e-5
allele num: 110540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*33G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*33G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*354G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*166G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*33G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4342G>A
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23782
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

11-45955487-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955487
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955487
    reference: chr 11
allele count: 3
allele frequency: 2.713606020587224e-5
allele num: 110554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*32C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*32C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*32C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*353C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*165C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4341C>T
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4022
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4758
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

11-45955489-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955489
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955489
    reference: chr 11
allele count: 1
allele frequency: 9.043717329571148e-6
allele num: 110574
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*30C>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*351C>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*30C>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*163C>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4339C>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*30C>G
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4769
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8398
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

11-45955494-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955494
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955494
    reference: chr 11
allele count: 213
allele frequency: 1.92627694979019e-3
allele num: 110576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*25G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*158G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*25G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*25G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*346G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4334G>A
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8661
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 2
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

11-45955501-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955501
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955501
    reference: chr 11
allele count: 1
allele frequency: 9.036362321983662e-6
allele num: 110664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*339A>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*18A>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*151A>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4327A>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*18A>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*18A>G
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3833
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

11-45955504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955504
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955504
    reference: chr 11
allele count: 4
allele frequency: 3.614218334929613e-5
allele num: 110674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*15G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*15G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*148G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*336G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4324G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*15G>A
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8681
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

11-45955513-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955513
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955513
    reference: chr 11
allele count: 1
allele frequency: 9.022176509861239e-6
allele num: 110838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*139C>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*6C>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*327C>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*6C>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4315C>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*6C>A
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23707
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

11-45955515-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955515
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955515
    reference: chr 11
allele count: 2
allele frequency: 1.802873780806606e-5
allele num: 110934
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*137A>C
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*325A>C
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4313A>C
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*4A>C
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*4A>C
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*4A>C
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4025
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2884
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

11-45955517-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955517
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955517
    reference: chr 11
allele count: 1
allele frequency: 9.011931797700155e-6
allele num: 110964
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.*2A>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*323A>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*135A>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.*2A>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.*2A>G
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4311A>G
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3833
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

11-45955534-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955534
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955534
    reference: chr 11
allele count: 1
allele frequency: 8.94566403664144e-6
allele num: 111786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4294G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.2031G>A
  hgvsp: ENST00000257821.4:c.2031G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.2028G>A
  hgvsp: ENST00000418153.2:c.2028G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*306G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*118G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1890G>A
  hgvsp: ENST00000323180.6:c.1890G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly676Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

11-45955549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955549
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955549
    reference: chr 11
allele count: 3
allele frequency: 2.648819509438627e-5
allele num: 113258
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.2013G>A
  hgvsp: ENST00000418153.2:c.2013G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*103G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4279G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.438G>A
  hgvsp: ENST00000532028.1:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.2016G>A
  hgvsp: ENST00000257821.4:c.2016G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*291G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1875G>A
  hgvsp: ENST00000323180.6:c.1875G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala671Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

11-45955550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955550
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955550
    reference: chr 11
allele count: 21
allele frequency: 1.846933211377109e-4
allele num: 113702
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.2012C>T
  hgvsp: ENSP00000398824.2:p.Ala671Val
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*290C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.437C>T
  hgvsp: ENSP00000431621.1:p.Ala146Val
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*102C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.2015C>T
  hgvsp: ENSP00000257821.4:p.Ala672Val
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4278C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1874C>T
  hgvsp: ENSP00000323152.6:p.Ala625Val
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3830
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala671Val
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

11-45955550-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955550
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955550
    reference: chr 11
allele count: 1
allele frequency: 8.794920054176708e-6
allele num: 113702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.437C>A
  hgvsp: ENSP00000431621.1:p.Ala146Glu
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1874C>A
  hgvsp: ENSP00000323152.6:p.Ala625Glu
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*102C>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.2012C>A
  hgvsp: ENSP00000398824.2:p.Ala671Glu
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.2015C>A
  hgvsp: ENSP00000257821.4:p.Ala672Glu
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*290C>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4278C>A
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3830
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4769
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala671Glu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

11-45955553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955553
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955553
    reference: chr 11
allele count: 1
allele frequency: 8.759789064279332e-6
allele num: 114158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4275C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.434C>T
  hgvsp: ENSP00000431621.1:p.Thr145Ile
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1871C>T
  hgvsp: ENSP00000323152.6:p.Thr624Ile
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.2009C>T
  hgvsp: ENSP00000398824.2:p.Thr670Ile
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*99C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*287C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.2012C>T
  hgvsp: ENSP00000257821.4:p.Thr671Ile
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4765
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4092
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3629
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr670Ile
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-45955568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955568
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955568
    reference: chr 11
allele count: 1
allele frequency: 8.580155815629612e-6
allele num: 116548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.419C>T
  hgvsp: ENSP00000431621.1:p.Ser140Phe
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4260C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1856C>T
  hgvsp: ENSP00000323152.6:p.Ser619Phe
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.1994C>T
  hgvsp: ENSP00000398824.2:p.Ser665Phe
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*84C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.1997C>T
  hgvsp: ENSP00000257821.4:p.Ser666Phe
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*272C>T
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4025
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23686
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser665Phe
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

11-45955574-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955574
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955574
    reference: chr 11
allele count: 2
allele frequency: 1.705320600272851e-5
allele num: 117280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4254C>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.1988C>A
  hgvsp: ENSP00000398824.2:p.Ser663Tyr
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.413C>A
  hgvsp: ENSP00000431621.1:p.Ser138Tyr
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*78C>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*266C>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.1991C>A
  hgvsp: ENSP00000257821.4:p.Ser664Tyr
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1850C>A
  hgvsp: ENSP00000323152.6:p.Ser617Tyr
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23681
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser663Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

11-45955580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955580
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955580
    reference: chr 11
allele count: 1
allele frequency: 8.461668641056017e-6
allele num: 118180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.407C>T
  hgvsp: ENSP00000431621.1:p.Ala136Val
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.1982C>T
  hgvsp: ENSP00000398824.2:p.Ala661Val
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.1985C>T
  hgvsp: ENSP00000257821.4:p.Ala662Val
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*260C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1844C>T
  hgvsp: ENSP00000323152.6:p.Ala615Val
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4248C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*72C>T
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4032
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala661Val
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

11-45955582-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955582
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955582
    reference: chr 11
allele count: 5
allele frequency: 4.224971270195363e-5
allele num: 118344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4246G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.1980G>A
  hgvsp: ENST00000418153.2:c.1980G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*258G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*70G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.405G>A
  hgvsp: ENST00000532028.1:c.405G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1842G>A
  hgvsp: ENST00000323180.6:c.1842G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.1983G>A
  hgvsp: ENST00000257821.4:c.1983G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23670
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4016
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro660Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

11-45955583-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955583
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955583
    reference: chr 11
allele count: 1
allele frequency: 8.423180592991915e-6
allele num: 118720
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.1979C>T
  hgvsp: ENSP00000398824.2:p.Pro660Leu
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*69C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4245C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*257C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.1982C>T
  hgvsp: ENSP00000257821.4:p.Pro661Leu
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.404C>T
  hgvsp: ENSP00000431621.1:p.Pro135Leu
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1841C>T
  hgvsp: ENSP00000323152.6:p.Pro614Leu
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10343
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4046
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro660Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ

11-45955584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955584
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955584
    reference: chr 11
allele count: 6
allele frequency: 5.04736107138651e-5
allele num: 118874
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.1978C>T
  hgvsp: ENSP00000398824.2:p.Pro660Ser
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4244C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*256C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.403C>T
  hgvsp: ENSP00000431621.1:p.Pro135Ser
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1840C>T
  hgvsp: ENSP00000323152.6:p.Pro614Ser
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.1981C>T
  hgvsp: ENSP00000257821.4:p.Pro661Ser
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*68C>T
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3826
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23667
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro660Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

11-45955585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955585
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955585
    reference: chr 11
allele count: 55
allele frequency: 4.624413540282846e-4
allele num: 118934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.1980G>A
  hgvsp: ENST00000257821.4:c.1980G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*67G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*255G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4243G>A
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.402G>A
  hgvsp: ENST00000532028.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.1977G>A
  hgvsp: ENST00000418153.2:c.1977G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1839G>A
  hgvsp: ENST00000323180.6:c.1839G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8007
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8639
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4027
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr659Thr
num of homozygotes: 1
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

11-45955586-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955586
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955586
    reference: chr 11
allele count: 5
allele frequency: 4.187183867617995e-5
allele num: 119412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1838C>T
  hgvsp: ENSP00000323152.6:p.Thr613Met
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.1976C>T
  hgvsp: ENSP00000398824.2:p.Thr659Met
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*66C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.1979C>T
  hgvsp: ENSP00000257821.4:p.Thr660Met
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.401C>T
  hgvsp: ENSP00000431621.1:p.Thr134Met
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4242C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*254C>T
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5011
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr659Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

11-45955594-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45955594
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 45955594
    reference: chr 11
allele count: 1
allele frequency: 8.333333333333334e-6
allele num: 120000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000257821
  ensembl transcript: ENST00000257821
  gene symbol: PHF21A
  hgvsc: ENST00000257821.4:c.1971C>T
  hgvsp: ENST00000257821.4:c.1971C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135365
  ensembl transcript: ENST00000527401
  gene symbol: PHF21A
  hgvsc: ENST00000527401.1:n.4234C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000323152
  ensembl transcript: ENST00000323180
  gene symbol: PHF21A
  hgvsc: ENST00000323180.6:c.1830C>T
  hgvsp: ENST00000323180.6:c.1830C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000435984
  ensembl transcript: ENST00000530587
  gene symbol: PHF21A
  hgvsc: ENST00000530587.1:c.*246C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431621
  ensembl transcript: ENST00000532028
  gene symbol: PHF21A
  hgvsc: ENST00000532028.1:c.393C>T
  hgvsp: ENST00000532028.1:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000431964
  ensembl transcript: ENST00000525676
  gene symbol: PHF21A
  hgvsc: ENST00000525676.1:c.*58C>T
  variant of: http://identifiers.org/hgnc/24156
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135365
  ensembl protein: ENSP00000398824
  ensembl transcript: ENST00000418153
  gene symbol: PHF21A
  hgvsc: ENST00000418153.2:c.1968C>T
  hgvsp: ENST00000418153.2:c.1968C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24156
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala656Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512081531436175e-5
allele num: 66134
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320185614849188e-4
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.228e0

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.294e0

QD
type: SiteQuality
SIO_000300: 1.994e1

DP
type: SiteQuality
SIO_000300: 1.555653e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

GenotypeQuality
all individuals: 311
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48761
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 3.889537145079736e-4
allele num: 10284
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51290508033526e-5
allele num: 66098
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

DP
type: SiteQuality
SIO_000300: 1.555128e6

FS
type: SiteQuality
SIO_000300: 1.119e0

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.913e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.92e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.422e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
all individuals: 1012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48610
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.04e0

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.397e0

MQRankSum
type: SiteQuality
SIO_000300: 6.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.006e0

DP
type: SiteQuality
SIO_000300: 1.549482e6

QD
type: SiteQuality
SIO_000300: 1.166e1

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51952590791673e-5
allele num: 65810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.467e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

QD
type: SiteQuality
SIO_000300: 1.13e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.15e-1

DP
type: SiteQuality
SIO_000300: 1.545961e6

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47192
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

DP
type: SiteQuality
SIO_000300: 1.524754e6

FS
type: SiteQuality
SIO_000300: 3.055e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.691e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.099e1

GenotypeQuality
all individuals: 1400
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46974
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.02552157180474e-4
allele num: 9874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.236323174877913e-4
allele num: 64708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.518092e6

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.286e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.655e0

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.334e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: -1.304e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.517545e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

FS
type: SiteQuality
SIO_000300: 1.1648e1

QD
type: SiteQuality
SIO_000300: 1.317e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47029
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6556
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546838262591263e-5
allele num: 64648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.516055e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.553e0

VQSLOD
type: SiteQuality
SIO_000300: -1.144e0

FS
type: SiteQuality
SIO_000300: 3.555e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.091e0

QD
type: SiteQuality
SIO_000300: 1.005e1

GenotypeQuality
all individuals: 289
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3075
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564259792266299e-5
allele num: 63928
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.498775e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQ
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SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.102607232968881e-4
allele num: 9512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63618
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.73e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.491218e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.959e0

FS
type: SiteQuality
SIO_000300: 5.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.903e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

QD
type: SiteQuality
SIO_000300: 1.107e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63278
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183992422448496e-4
allele num: 8446
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.481901e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.859e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

FS
type: SiteQuality
SIO_000300: 8.281000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.763e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

QD
type: SiteQuality
SIO_000300: 2.502e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63156
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.372479240806643e-4
allele num: 8430
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 1.478951e6

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

QD
type: SiteQuality
SIO_000300: 1.425e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.61384029436447e-5
allele num: 61964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.153999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.837e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.12e-1

DP
type: SiteQuality
SIO_000300: 1.453992e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.245e0

QD
type: SiteQuality
SIO_000300: 1.313e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61926
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
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South Asian
type: Population
allele count: 1
allele frequency: 6.150061500615006e-5
allele num: 16260
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

DP
type: SiteQuality
SIO_000300: 1.452976e6

VQSLOD
type: SiteQuality
SIO_000300: 1.42e-1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.136e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.62216526619732e-5
allele num: 61646
num of homozygotes: 0

East Asian
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allele frequency: 3.673769287288758e-4
allele num: 8166
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 3
allele frequency: 2.664298401420959e-4
allele num: 11260
num of homozygotes: 0

South Asian
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allele frequency: 6.16827041697508e-5
allele num: 16212
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Other
type: Population
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allele frequency: 0.0e0
allele num: 840
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6228
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 3.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.63826998689384e-5
allele num: 61040
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Other
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South Asian
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allele frequency: 1.859427296392711e-4
allele num: 16134
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.743e0

MQRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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Other
type: Population
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South Asian
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allele count: 6
allele frequency: 3.722084367245658e-4
allele num: 16120
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FS
type: SiteQuality
SIO_000300: 1.056e0

BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
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DP
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 612
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6355
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.3424317617866e-4
allele num: 16120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.360000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.473e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.397e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

DP
type: SiteQuality
SIO_000300: 1.426956e6

FS
type: SiteQuality
SIO_000300: 1.056e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 312
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8734
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38409
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5007
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.697792869269949e-5
allele num: 58900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.366146e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.155e0

VQSLOD
type: SiteQuality
SIO_000300: -6.546999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.38e1

GenotypeQuality
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 887
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4715
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.40861317610869e-5
allele num: 15604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 3.358e0

VQSLOD
type: SiteQuality
SIO_000300: 8.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.443e0

MQRankSum
type: SiteQuality
SIO_000300: -7.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-1

DP
type: SiteQuality
SIO_000300: 1.32748e6

QD
type: SiteQuality
SIO_000300: 1.225e1

GenotypeQuality
all individuals: 808
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1024
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 711
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 884
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variant carriers: 0

GenotypeQuality
all individuals: 366
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variant carriers: 0

GenotypeQuality
all individuals: 35327
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.739311928201204e-5
allele num: 57494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.014e0

DP
type: SiteQuality
SIO_000300: 1.318223e6

VQSLOD
type: SiteQuality
SIO_000300: 1.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.027e1

GenotypeQuality
all individuals: 227
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10641
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
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variant carriers: 1

GenotypeQuality
all individuals: 1056
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variant carriers: 0

GenotypeQuality
all individuals: 363
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GenotypeQuality
all individuals: 764
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variant carriers: 0

GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 450
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variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.375137513751375e-4
allele num: 7272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.846e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.89e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.747e0

QD
type: SiteQuality
SIO_000300: 7.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.313513e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
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variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 372
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variant carriers: 0

GenotypeQuality
all individuals: 1018
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variant carriers: 0

GenotypeQuality
all individuals: 879
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variant carriers: 0

GenotypeQuality
all individuals: 539
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variant carriers: 0

GenotypeQuality
all individuals: 446
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variant carriers: 0

GenotypeQuality
all individuals: 35456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
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variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 726
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7272
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.439979392065946e-5
allele num: 15528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57276
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.61e1

DP
type: SiteQuality
SIO_000300: 1.312408e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 372
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variant carriers: 0

GenotypeQuality
all individuals: 222
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1047
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variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.75e1
variant carriers: 32

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.745931978490118e-4
allele num: 57276
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.487562189054726e-3
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.50754121360926e-4
allele num: 5702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7272
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.15919629057187e-3
allele num: 15528
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.61e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

DP
type: SiteQuality
SIO_000300: 1.312408e6

GenotypeQuality
all individuals: 1001
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variant carriers: 0

GenotypeQuality
all individuals: 859
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GenotypeQuality
all individuals: 4531
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GenotypeQuality
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GenotypeQuality
all individuals: 231
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 292
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variant carriers: 29

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10500
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 3.320420586607637e-3
allele num: 7228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.248609118583576e-5
allele num: 57158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15506
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.515723270440251e-4
allele num: 7950
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: 4.74e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.309732e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 154
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4531
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GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.749536372861192e-5
allele num: 57158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.316e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 1.309732e6

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

GenotypeQuality
all individuals: 4428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 7.5e0
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GenotypeQuality
all individuals: 341
bin: 8.25e1
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GenotypeQuality
all individuals: 840
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GenotypeQuality
all individuals: 139
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GenotypeQuality
all individuals: 682
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GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 356
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GenotypeQuality
all individuals: 34349
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GenotypeQuality
all individuals: 265
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GenotypeQuality
all individuals: 651
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GenotypeQuality
all individuals: 342
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.225352112676057e-4
allele num: 7100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.654373431164318e-5
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.306728932286139e-5
allele num: 56532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15442
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 3.012e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

QD
type: SiteQuality
SIO_000300: 1.284e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 1.28654e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

GenotypeQuality
all individuals: 264
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 817
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34670
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.938360147315371e-4
allele num: 10318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.063867513032377e-4
allele num: 56398
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.411233418007338e-4
allele num: 7086
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.216e0

QD
type: SiteQuality
SIO_000300: 1.293e1

DP
type: SiteQuality
SIO_000300: 1.283161e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.477e0

GenotypeQuality
all individuals: 33938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 9.75e1
variant carriers: 14

Latino
type: Population
allele count: 2
allele frequency: 1.968503937007874e-4
allele num: 10160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5562
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 8.491182233834096e-4
allele num: 15310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.232e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.723e0

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

DP
type: SiteQuality
SIO_000300: 1.261185e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 511
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 455
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.64982045484772e-5
allele num: 15038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.211e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.198789e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

GenotypeQuality
all individuals: 354
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2368
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 3732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 1260
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variant carriers: 0

GenotypeQuality
all individuals: 290
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variant carriers: 0

GenotypeQuality
all individuals: 15924
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.705762460626274e-5
allele num: 53970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15032
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

DP
type: SiteQuality
SIO_000300: 1.196776e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

QD
type: SiteQuality
SIO_000300: 1.28e1

GenotypeQuality
all individuals: 153
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.75e1
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GenotypeQuality
all individuals: 30240
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
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variant carriers: 0

GenotypeQuality
all individuals: 443
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GenotypeQuality
all individuals: 626
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GenotypeQuality
all individuals: 1222
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variant carriers: 0

GenotypeQuality
all individuals: 390
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variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.863307743906984e-5
allele num: 53668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7190
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.221e-1

DP
type: SiteQuality
SIO_000300: 1.186756e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.93e-1

GenotypeQuality
all individuals: 1487
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20131
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variant carriers: 0

GenotypeQuality
all individuals: 883
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GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 457
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GenotypeQuality
all individuals: 370
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GenotypeQuality
all individuals: 93
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GenotypeQuality
all individuals: 243
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GenotypeQuality
all individuals: 250
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 516
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variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.877471888328809e-5
allele num: 51580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14706
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.539999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.106845e6

GenotypeQuality
all individuals: 133
bin: 8.25e1
variant carriers: 18

GenotypeQuality
all individuals: 334
bin: 5.25e1
variant carriers: 14

GenotypeQuality
all individuals: 20467
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1307
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 500
bin: 7.25e1
variant carriers: 16

GenotypeQuality
all individuals: 3154
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 28

GenotypeQuality
all individuals: 24740
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 379
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 35

GenotypeQuality
all individuals: 2755
bin: 6.75e1
variant carriers: 15

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 21

South Asian
type: Population
allele count: 83
allele frequency: 5.656262777702058e-3
allele num: 14674
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 2146
allele frequency: 4.198294076218796e-2
allele num: 51116
num of homozygotes: 38

African
type: Population
allele count: 60
allele frequency: 8.813160987074031e-3
allele num: 6808
num of homozygotes: 0

Latino
type: Population
allele count: 96
allele frequency: 1.063594061599823e-2
allele num: 9026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 233
allele frequency: 4.592037839968467e-2
allele num: 5074
num of homozygotes: 3

Other
type: Population
allele count: 15
allele frequency: 2.083333333333333e-2
allele num: 720
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.44e1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.068e0

DP
type: SiteQuality
SIO_000300: 1.099001e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

GenotypeQuality
all individuals: 257
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24740
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 133
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GenotypeQuality
all individuals: 20467
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GenotypeQuality
all individuals: 1307
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GenotypeQuality
all individuals: 500
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GenotypeQuality
all individuals: 311
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variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14674
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.388888888888889e-3
allele num: 720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51116
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.44e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.068e0

DP
type: SiteQuality
SIO_000300: 1.099001e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

GenotypeQuality
all individuals: 255
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 18

GenotypeQuality
all individuals: 21642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 413
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GenotypeQuality
all individuals: 308
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variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 9.805294859223982e-4
allele num: 14278
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.16875104218776e-5
allele num: 47976
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.780346820809248e-3
allele num: 692
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 3.144e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 9.91467e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

QD
type: SiteQuality
SIO_000300: 1.421e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.293472776478143e-5
allele num: 43602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.672e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.65e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

QD
type: SiteQuality
SIO_000300: 1.176e1

DP
type: SiteQuality
SIO_000300: 8.66821e5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40550
num of homozygotes: 0

African
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allele count: 7
allele frequency: 1.309390198279087e-3
allele num: 5346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.84906e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.756643510861176e-5
allele num: 36276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.365e0

DP
type: SiteQuality
SIO_000300: 7.00091e5

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

QD
type: SiteQuality
SIO_000300: 1.684e1

GenotypeQuality
all individuals: 32374
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 24
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.756643510861176e-5
allele num: 36276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12174
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.365e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

QD
type: SiteQuality
SIO_000300: 1.684e1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 7.00091e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 7
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.152389151958674e-4
allele num: 4646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.99119e5

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.573e0

QD
type: SiteQuality
SIO_000300: 1.802e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.982e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.481042654028436e-4
allele num: 33760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11686
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3306
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.77e-2

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.57859e5

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.698e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 1.012145748987854e-3
allele num: 3952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3080
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 31060
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.297e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.15e-2

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.22849e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 25316
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.011531458628363e-4
allele num: 9886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-2

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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MQ
type: SiteQuality
SIO_000300: 5.55e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.365560562610952e-4
allele num: 14646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1156
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.802e0

DP
type: SiteQuality
SIO_000300: 3.99385e5

QD
type: SiteQuality
SIO_000300: 1.186e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

MQ
type: SiteQuality
SIO_000300: 4.81e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: -7.727000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23930
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2785
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.107174490699734e-4
allele num: 9032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.149e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

DP
type: SiteQuality
SIO_000300: 2.320732e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.091e0

GenotypeQuality
all individuals: 3024
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7630
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4712
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2785
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 36
allele frequency: 3.541912632821724e-3
allele num: 10164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.321861e6

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.99e-1

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3985
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 408
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24012
bin: 9.75e1
variant carriers: 393

GenotypeQuality
all individuals: 2780
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 19
allele frequency: 2.877915783096032e-3
allele num: 6602
num of homozygotes: 1

African
type: Population
allele count: 6
allele frequency: 5.899705014749262e-4
allele num: 10170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 300
allele frequency: 4.692632566870014e-3
allele num: 63930
num of homozygotes: 1

Latino
type: Population
allele count: 47
allele frequency: 4.096217535297194e-3
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.063291139240506e-3
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 2.21141088014153e-3
allele num: 9044
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

FS
type: SiteQuality
SIO_000300: 2.001e0

QD
type: SiteQuality
SIO_000300: 1.196e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.4e-1

DP
type: SiteQuality
SIO_000300: 2.329071e6

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4739
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.715356458079135e-5
allele num: 11474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.094844844844845e-4
allele num: 63936
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 2.024e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

DP
type: SiteQuality
SIO_000300: 2.325354e6

QD
type: SiteQuality
SIO_000300: 1.122e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

GenotypeQuality
all individuals: 457
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8213
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4087
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23775
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563819472680074e-5
allele num: 63946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.715356458079135e-5
allele num: 11474
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.104484205875856e-4
allele num: 9054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.284e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 7.903e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 2.326308e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23776
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4088
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563770563582911e-5
allele num: 63948
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.253e0

QD
type: SiteQuality
SIO_000300: 1.181e1

DP
type: SiteQuality
SIO_000300: 2.327253e6

FS
type: SiteQuality
SIO_000300: 1.154e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 3.05e-1

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4763
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3817
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4014
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4077
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 23820
bin: 9.75e1
variant carriers: 210

African
type: Population
allele count: 8
allele frequency: 7.864726700747149e-4
allele num: 10172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 183
allele frequency: 2.861968659097307e-3
allele num: 63942
num of homozygotes: 1

South Asian
type: Population
allele count: 10
allele frequency: 1.101806963420009e-3
allele num: 9076
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.544077552256892e-4
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.265822784810127e-3
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17343346632246e-4
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.101813110181311e-4
allele num: 11472
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.333036e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.629999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

GenotypeQuality
all individuals: 2754
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23709
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4092
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56289072268067e-5
allele num: 63984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.331424e6

FS
type: SiteQuality
SIO_000300: 2.723e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

MQRankSum
type: SiteQuality
SIO_000300: 8.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23711
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.193463478833078e-4
allele num: 9118
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.825112988799372e-5
allele num: 10178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56289072268067e-5
allele num: 63984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.462e0

QD
type: SiteQuality
SIO_000300: 9.77e0

DP
type: SiteQuality
SIO_000300: 2.332565e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 219
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4812
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2728
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.085069444444444e-4
allele num: 9216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.688e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

VQSLOD
type: SiteQuality
SIO_000300: -3.585e0

DP
type: SiteQuality
SIO_000300: 2.337733e6

FS
type: SiteQuality
SIO_000300: 8.186999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

QD
type: SiteQuality
SIO_000300: 2.12e0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23708
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64060
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743071291615827e-4
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 4.357e0

DP
type: SiteQuality
SIO_000300: 2.338966e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4092
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4818
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.315e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.326e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

DP
type: SiteQuality
SIO_000300: 2.339995e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

GenotypeQuality
all individuals: 3059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4775
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 9.013999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -5.949e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.97e-1

DP
type: SiteQuality
SIO_000300: 2.349038e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

QD
type: SiteQuality
SIO_000300: 1.452e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.817e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3735
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 137
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 23698
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4752
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.645401052957572e-5
allele num: 64580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10952
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

QD
type: SiteQuality
SIO_000300: 1.202e1

MQRankSum
type: SiteQuality
SIO_000300: -5.86e-1

DP
type: SiteQuality
SIO_000300: 2.358544e6

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 2.144e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4090
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23701
bin: 9.75e1
variant carriers: 21

Latino
type: Population
allele count: 2
allele frequency: 1.740644038294169e-4
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 1.858008996675142e-3
allele num: 10226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.56e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

DP
type: SiteQuality
SIO_000300: 2.360697e6

QD
type: SiteQuality
SIO_000300: 1.347e1

GenotypeQuality
all individuals: 255
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4026
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23701
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4090
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545881770962157e-5
allele num: 64688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.347e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 2.360697e6

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23688
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
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variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.109e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.902e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.52e-1

DP
type: SiteQuality
SIO_000300: 2.362763e6

MQ
type: SiteQuality
SIO_000300: 5.91e1

FS
type: SiteQuality
SIO_000300: 8.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

QD
type: SiteQuality
SIO_000300: 1.308e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.382e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 520
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65318
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.471607890017931e-5
allele num: 13384
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

DP
type: SiteQuality
SIO_000300: 2.378227e6

FS
type: SiteQuality
SIO_000300: 4.584e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.727e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.167e0

VQSLOD
type: SiteQuality
SIO_000300: -5.86e-2

QD
type: SiteQuality
SIO_000300: 1.017e1

GenotypeQuality
all individuals: 4095
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4813
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GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.956947162426615e-4
allele num: 10220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.6e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.109e0

FS
type: SiteQuality
SIO_000300: 1.545e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.601e0

DP
type: SiteQuality
SIO_000300: 2.383545e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522162688748173e-5
allele num: 65696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.259e0

DP
type: SiteQuality
SIO_000300: 2.390538e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.239e0

MQRankSum
type: SiteQuality
SIO_000300: -1.079e0

QD
type: SiteQuality
SIO_000300: 1.252e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.648e0

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeQuality
all individuals: 1897
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4872
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4086
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.564403736725192e-5
allele num: 65726
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.951219512195122e-4
allele num: 10250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14704
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 1.305e1

MQRankSum
type: SiteQuality
SIO_000300: 4.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

FS
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 2.39359e6

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
all individuals: 486
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23669
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4909
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14994
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.522e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 2.396163e6

VQSLOD
type: SiteQuality
SIO_000300: -7.578e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.715e0

QD
type: SiteQuality
SIO_000300: 1.506e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeQuality
all individuals: 4048
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.037759348704396e-5
allele num: 65838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.627487274409995e-4
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

DP
type: SiteQuality
SIO_000300: 2.396663e6

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.723e0

FS
type: SiteQuality
SIO_000300: 4.073e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.12e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

GenotypeQuality
all individuals: 4101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4897
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23687
bin: 9.75e1
variant carriers: 53

GenotypeQuality
all individuals: 3058
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.761811792268645e-5
allele num: 10244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.253121487377343e-4
allele num: 65834
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.469010175763182e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.465603881476347e-4
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.186552406064601e-3
allele num: 15170
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 1.742e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.39951e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

QD
type: SiteQuality
SIO_000300: 1.267e1

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23664
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1494
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4071
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10858
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4106
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.546556741028128e-5
allele num: 65984
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313208420078649e-4
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.139e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 2.799e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.49e-1

DP
type: SiteQuality
SIO_000300: 2.402328e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

GenotypeQuality
all individuals: 454
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5019
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4070
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23658
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4109
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513271390091099e-5
allele num: 66082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.272e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

DP
type: SiteQuality
SIO_000300: 2.406232e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.774e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.19e-1