16-57088616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088616
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088616
    reference: chr 16
allele count: 4
allele frequency: 3.296902560044838e-5
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-47G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1607C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

16-57088618-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088618
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088618
    reference: chr 16
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1609A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-45T>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-45T>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

16-57088620-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088620
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088620
    reference: chr 16
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-43C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1611G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

16-57088629-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088629
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088629
    reference: chr 16
allele count: 5
allele frequency: 4.120245236996506e-5
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1620A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-34T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-34T>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

16-57088631-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088631
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088631
    reference: chr 16
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1622T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-32A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-32A>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

16-57088632-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088632
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088632
    reference: chr 16
allele count: 2
allele frequency: 1.648070932972955e-5
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1623A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-31T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-31T>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

16-57088638-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088638
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088638
    reference: chr 16
allele count: 3
allele frequency: 2.472024918011174e-5
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1629G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-25C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-25C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7617
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

16-57088639-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088639
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088639
    reference: chr 16
allele count: 40
allele frequency: 3.295924589245398e-4
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1630C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-24G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-24G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7617
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-57088648-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088648
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088648
    reference: chr 16
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1639G>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-15C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-15C>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

16-57088649-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088649
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088649
    reference: chr 16
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1640G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-14C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-14C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

16-57088651-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088651
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088651
    reference: chr 16
allele count: 3
allele frequency: 2.471495419495156e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-12T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1642A>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

16-57088655-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088655
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088655
    reference: chr 16
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-8C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1646G>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-8C>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3507-8C>G
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

16-57088655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088655
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088655
    reference: chr 16
allele count: 53
allele frequency: 4.366164695027515e-4
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1646G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-8C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-8C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 9.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
hgvs: c.3507-8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

16-57088657-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088657
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088657
    reference: chr 16
allele count: 3
allele frequency: 2.471413978317461e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.599-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.328-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3507-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3507-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2689-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2764-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.648-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.960-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.455-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3507-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.555-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1314-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3507-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1938-6T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1648A>G
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3507-6T>C
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

16-57088675-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088675
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088675
    reference: chr 16
allele count: 3
allele frequency: 2.471088267272907e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2701G>A
  hgvsp: ENST00000545081.1:c.2701G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3519G>A
  hgvsp: ENST00000539144.1:c.3519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3519G>A
  hgvsp: ENST00000308149.7:c.3519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.567G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3519G>A
  hgvsp: ENST00000262510.6:c.3519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.972G>A
  hgvsp: ENST00000538453.1:c.972G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1950G>A
  hgvsp: ENST00000538110.1:c.1950G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.340G>A
  hgvsp: ENST00000537056.1:c.340G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.660G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1326G>A
  hgvsp: ENST00000543030.1:c.1326G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1666C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3519G>A
  hgvsp: ENST00000436936.1:c.3519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2776G>A
  hgvsp: ENST00000538805.1:c.2776G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.611G>A
  hgvsp: ENST00000540182.1:c.611G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.467G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1173Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-57088686-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088686
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088686
    reference: chr 16
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.478C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.983C>T
  hgvsp: ENSP00000444773.1:p.Pro328Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2712C>T
  hgvsp: ENSP00000443825.1:p.Pro905Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3530C>T
  hgvsp: ENSP00000441727.1:p.Pro1177Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3530C>T
  hgvsp: ENSP00000389739.1:p.Pro1177Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.622C>T
  hgvsp: ENSP00000438548.1:p.Pro208Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.671C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1677G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1961C>T
  hgvsp: ENSP00000441597.1:p.Pro654Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1337C>T
  hgvsp: ENSP00000440153.1:p.Pro446Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2787C>T
  hgvsp: ENSP00000442906.1:p.Pro930Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.351C>T
  hgvsp: ENSP00000437583.1:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3530C>T
  hgvsp: ENSP00000308886.7:p.Pro1177Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.578C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3530C>T
  hgvsp: ENSP00000262510.6:p.Pro1177Leu
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1177Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

16-57088712-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088712
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088712
    reference: chr 16
allele count: 4
allele frequency: 3.294784356363876e-5
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.604A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.1987A>G
  hgvsp: ENSP00000441597.1:p.Thr663Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3556A>G
  hgvsp: ENSP00000262510.6:p.Thr1186Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1703T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2813A>G
  hgvsp: ENSP00000442906.1:p.Thr939Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.697A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3556A>G
  hgvsp: ENSP00000389739.1:p.Thr1186Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.648A>G
  hgvsp: ENSP00000438548.1:p.Thr217Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1363A>G
  hgvsp: ENSP00000440153.1:p.Thr455Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2738A>G
  hgvsp: ENSP00000443825.1:p.Thr914Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.504A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3556A>G
  hgvsp: ENSP00000441727.1:p.Thr1186Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1009A>G
  hgvsp: ENSP00000444773.1:p.Thr337Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.377A>G
  hgvsp: ENSP00000437583.1:p.Thr127Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3556A>G
  hgvsp: ENSP00000308886.7:p.Thr1186Ala
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1186Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

16-57088730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088730
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088730
    reference: chr 16
allele count: 5
allele frequency: 4.118412599047823e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1381C>T
  hgvsp: ENSP00000440153.1:p.Arg461Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.666C>T
  hgvsp: ENSP00000438548.1:p.Arg223Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1721G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3574C>T
  hgvsp: ENSP00000308886.7:p.Arg1192Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3574C>T
  hgvsp: ENSP00000441727.1:p.Arg1192Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3574C>T
  hgvsp: ENSP00000389739.1:p.Arg1192Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.522C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2756C>T
  hgvsp: ENSP00000443825.1:p.Arg920Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.715C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3574C>T
  hgvsp: ENSP00000262510.6:p.Arg1192Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2005C>T
  hgvsp: ENSP00000441597.1:p.Arg669Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.395C>T
  hgvsp: ENSP00000437583.1:p.Arg133Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1027C>T
  hgvsp: ENSP00000444773.1:p.Arg343Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2831C>T
  hgvsp: ENSP00000442906.1:p.Arg945Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.622C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Arg1192Trp
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

16-57088731-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088731
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088731
    reference: chr 16
allele count: 11
allele frequency: 9.060507717905211e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2757G>A
  hgvsp: ENSP00000443825.1:p.Arg920Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.716G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.623G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.523G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2832G>A
  hgvsp: ENSP00000442906.1:p.Arg945Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1028G>A
  hgvsp: ENSP00000444773.1:p.Arg343Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2006G>A
  hgvsp: ENSP00000441597.1:p.Arg669Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.396G>A
  hgvsp: ENSP00000437583.1:p.Arg133Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.667G>A
  hgvsp: ENSP00000438548.1:p.Arg223Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3575G>A
  hgvsp: ENSP00000308886.7:p.Arg1192Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3575G>A
  hgvsp: ENSP00000262510.6:p.Arg1192Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3575G>A
  hgvsp: ENSP00000389739.1:p.Arg1192Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1382G>A
  hgvsp: ENSP00000440153.1:p.Arg461Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3575G>A
  hgvsp: ENSP00000441727.1:p.Arg1192Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1722C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1192Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

16-57088731-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088731
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088731
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2757G>C
  hgvsp: ENSP00000443825.1:p.Arg920Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3575G>C
  hgvsp: ENSP00000389739.1:p.Arg1192Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1382G>C
  hgvsp: ENSP00000440153.1:p.Arg461Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3575G>C
  hgvsp: ENSP00000262510.6:p.Arg1192Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.667G>C
  hgvsp: ENSP00000438548.1:p.Arg223Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3575G>C
  hgvsp: ENSP00000308886.7:p.Arg1192Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2832G>C
  hgvsp: ENSP00000442906.1:p.Arg945Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.523G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.396G>C
  hgvsp: ENSP00000437583.1:p.Arg133Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3575G>C
  hgvsp: ENSP00000441727.1:p.Arg1192Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1722C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2006G>C
  hgvsp: ENSP00000441597.1:p.Arg669Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1028G>C
  hgvsp: ENSP00000444773.1:p.Arg343Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.716G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.623G>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1192Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

16-57088746-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088746
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088746
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.682A>T
  hgvsp: ENSP00000438548.1:p.Asp228Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1043A>T
  hgvsp: ENSP00000444773.1:p.Asp348Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2021A>T
  hgvsp: ENSP00000441597.1:p.Asp674Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2772A>T
  hgvsp: ENSP00000443825.1:p.Asp925Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1737T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2847A>T
  hgvsp: ENSP00000442906.1:p.Asp950Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1397A>T
  hgvsp: ENSP00000440153.1:p.Asp466Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3590A>T
  hgvsp: ENSP00000262510.6:p.Asp1197Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.638A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3590A>T
  hgvsp: ENSP00000389739.1:p.Asp1197Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3590A>T
  hgvsp: ENSP00000441727.1:p.Asp1197Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.538A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.731A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3590A>T
  hgvsp: ENSP00000308886.7:p.Asp1197Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.411A>T
  hgvsp: ENSP00000437583.1:p.Asp138Val
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1197Val
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-57088750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088750
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088750
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2025C>T
  hgvsp: ENST00000538110.1:c.2025C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1401C>T
  hgvsp: ENST00000543030.1:c.1401C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1047C>T
  hgvsp: ENST00000538453.1:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.642C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.415C>T
  hgvsp: ENST00000537056.1:c.415C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.735C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3594C>T
  hgvsp: ENST00000436936.1:c.3594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3594C>T
  hgvsp: ENST00000539144.1:c.3594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3594C>T
  hgvsp: ENST00000308149.7:c.3594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2776C>T
  hgvsp: ENST00000545081.1:c.2776C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3594C>T
  hgvsp: ENST00000262510.6:c.3594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2851C>T
  hgvsp: ENST00000538805.1:c.2851C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1741G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.542C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.686C>T
  hgvsp: ENST00000540182.1:c.686C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3594C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

16-57088752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088752
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088752
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2778G>A
  hgvsp: ENSP00000443825.1:p.Arg927Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.644G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3596G>A
  hgvsp: ENSP00000308886.7:p.Arg1199Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1743C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3596G>A
  hgvsp: ENSP00000441727.1:p.Arg1199Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3596G>A
  hgvsp: ENSP00000262510.6:p.Arg1199Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1049G>A
  hgvsp: ENSP00000444773.1:p.Arg350Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3596G>A
  hgvsp: ENSP00000389739.1:p.Arg1199Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2027G>A
  hgvsp: ENSP00000441597.1:p.Arg676Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.688G>A
  hgvsp: ENSP00000438548.1:p.Arg230Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.417G>A
  hgvsp: ENSP00000437583.1:p.Arg140Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2853G>A
  hgvsp: ENSP00000442906.1:p.Arg952Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1403G>A
  hgvsp: ENSP00000440153.1:p.Arg468Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.544G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.737G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1199Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

16-57088755-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088755
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088755
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3596+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.644+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1746C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3596+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.544+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2778+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.688+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1403+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.737+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3596+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2027+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2853+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3596+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1049+3G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.417+3G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3596+3G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

16-57088764-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088764
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088764
    reference: chr 16
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.544+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2853+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.417+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1755G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1049+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3596+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3596+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.737+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1403+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.644+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3596+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.688+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3596+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2778+12C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2027+12C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

16-57088777-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088777
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088777
    reference: chr 16
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2778+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1768C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.544+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3596+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1403+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2027+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.688+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3596+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.644+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3596+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.737+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2853+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.417+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3596+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1049+25G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-57088782-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088782
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088782
    reference: chr 16
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2778+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.688+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2027+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1049+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.417+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3596+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.737+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3596+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3596+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.644+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.544+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3596+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1403+30C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1773G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2853+30C>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

16-57088782-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088782
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088782
    reference: chr 16
allele count: 98
allele frequency: 8.074349932439113e-4
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.737+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1049+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1403+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2027+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2853+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.644+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3596+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1773G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.417+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3596+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3596+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.544+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3596+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.688+30C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2778+30C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 9.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

16-57088783-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088783
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088783
    reference: chr 16
allele count: 3
allele frequency: 2.471576866040534e-5
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2027+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1774C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.544+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1403+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2853+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.417+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.688+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3596+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.737+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3596+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3596+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.644+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1049+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3596+31G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2778+31G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4135
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

16-57088795-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088795
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088795
    reference: chr 16
allele count: 4
allele frequency: 3.296033224014898e-5
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3596+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2853+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2027+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1403+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1786A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1049+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.737+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.644+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.544+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.688+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3596+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3596+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.417+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3596+43T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2778+43T>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

16-57088913-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088913
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088913
    reference: chr 16
allele count: 20
allele frequency: 1.648288252649623e-4
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3597-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.418-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.545-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2854-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.645-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.689-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1404-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2028-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3597-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1050-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3597-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3597-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.738-31A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1904T>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2779-31A>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

16-57088913-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088913
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088913
    reference: chr 16
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2028-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2779-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1904T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.645-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2854-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1404-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3597-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3597-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.418-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3597-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.738-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3597-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.545-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1050-31A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.689-31A>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-57088917-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088917
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088917
    reference: chr 16
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2779-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3597-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2028-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3597-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.418-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1908C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3597-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1050-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.645-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.545-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3597-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2854-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.738-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1404-27G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.689-27G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

16-57088917-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088917
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088917
    reference: chr 16
allele count: 4
allele frequency: 3.296196189597204e-5
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2854-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1908C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1404-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.545-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2028-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3597-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.689-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3597-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2779-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.645-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.418-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3597-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.738-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3597-27G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1050-27G>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

16-57088920-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088920
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088920
    reference: chr 16
allele count: 2
allele frequency: 1.647962294622699e-5
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.738-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3597-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3597-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2028-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1404-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.418-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3597-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.689-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2854-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1050-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2779-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3597-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.545-24T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1911A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.645-24T>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/16-57088924-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088924
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088924
    reference: chr 16
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.545-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3597-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1404-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1915G>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.689-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.645-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.418-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3597-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2779-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2028-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1050-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3597-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.738-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3597-20C>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2854-20C>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

16-57088941-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088941
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088941
    reference: chr 16
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.738-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1050-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.545-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2028-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.689-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.645-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3597-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1404-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3597-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3597-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.418-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1932G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3597-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2779-3C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2854-3C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3597-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

16-57088943-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088943
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088943
    reference: chr 16
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2779-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1050-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3597-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1934C>T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000534931
  gene symbol: NLRC5
  hgvsc: ENST00000534931.1:n.545-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2854-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.689-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.645-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3597-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3597-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.738-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2028-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3597-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1404-1G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.418-1G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3597-1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

16-57088949-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088949
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088949
    reference: chr 16
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2859T>C
  hgvsp: ENSP00000442906.1:p.Leu954Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3602T>C
  hgvsp: ENSP00000389739.1:p.Leu1201Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3602T>C
  hgvsp: ENSP00000441727.1:p.Leu1201Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1409T>C
  hgvsp: ENSP00000440153.1:p.Leu470Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2784T>C
  hgvsp: ENSP00000443825.1:p.Leu929Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.423T>C
  hgvsp: ENSP00000437583.1:p.Leu142Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3602T>C
  hgvsp: ENSP00000308886.7:p.Leu1201Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2033T>C
  hgvsp: ENSP00000441597.1:p.Leu678Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.694T>C
  hgvsp: ENSP00000438548.1:p.Leu232Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.650T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1940A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1055T>C
  hgvsp: ENSP00000444773.1:p.Leu352Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3602T>C
  hgvsp: ENSP00000262510.6:p.Leu1201Pro
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.743T>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1201Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

16-57088950-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088950
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088950
    reference: chr 16
allele count: 11
allele frequency: 9.062000560196398e-5
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2785G>C
  hgvsp: ENST00000545081.1:c.2785G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1410G>C
  hgvsp: ENST00000543030.1:c.1410G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2860G>C
  hgvsp: ENST00000538805.1:c.2860G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.424G>C
  hgvsp: ENST00000537056.1:c.424G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3603G>C
  hgvsp: ENST00000308149.7:c.3603G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.695G>C
  hgvsp: ENST00000540182.1:c.695G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3603G>C
  hgvsp: ENST00000436936.1:c.3603G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.651G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.744G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1941C>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3603G>C
  hgvsp: ENST00000539144.1:c.3603G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1056G>C
  hgvsp: ENST00000538453.1:c.1056G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2034G>C
  hgvsp: ENST00000538110.1:c.2034G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3603G>C
  hgvsp: ENST00000262510.6:c.3603G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1201Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-57088955-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088955
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088955
    reference: chr 16
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1061A>G
  hgvsp: ENSP00000444773.1:p.His354Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2790A>G
  hgvsp: ENSP00000443825.1:p.His931Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.429A>G
  hgvsp: ENSP00000437583.1:p.His144Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1946T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.700A>G
  hgvsp: ENSP00000438548.1:p.His234Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3608A>G
  hgvsp: ENSP00000441727.1:p.His1203Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2039A>G
  hgvsp: ENSP00000441597.1:p.His680Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3608A>G
  hgvsp: ENSP00000262510.6:p.His1203Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.749A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3608A>G
  hgvsp: ENSP00000389739.1:p.His1203Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1415A>G
  hgvsp: ENSP00000440153.1:p.His472Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3608A>G
  hgvsp: ENSP00000308886.7:p.His1203Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.656A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2865A>G
  hgvsp: ENSP00000442906.1:p.His956Arg
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His1203Arg
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

16-57088956-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088956
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088956
    reference: chr 16
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3609T>C
  hgvsp: ENST00000436936.1:c.3609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2866T>C
  hgvsp: ENST00000538805.1:c.2866T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.430T>C
  hgvsp: ENST00000537056.1:c.430T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3609T>C
  hgvsp: ENST00000539144.1:c.3609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1062T>C
  hgvsp: ENST00000538453.1:c.1062T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1416T>C
  hgvsp: ENST00000543030.1:c.1416T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.701T>C
  hgvsp: ENST00000540182.1:c.701T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1947A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.750T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2040T>C
  hgvsp: ENST00000538110.1:c.2040T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.657T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3609T>C
  hgvsp: ENST00000308149.7:c.3609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3609T>C
  hgvsp: ENST00000262510.6:c.3609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2791T>C
  hgvsp: ENST00000545081.1:c.2791T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His1203His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-57088959-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088959
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088959
    reference: chr 16
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2043A>C
  hgvsp: ENST00000538110.1:c.2043A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2794A>C
  hgvsp: ENST00000545081.1:c.2794A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.704A>C
  hgvsp: ENST00000540182.1:c.704A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.660A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.753A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.433A>C
  hgvsp: ENST00000537056.1:c.433A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1065A>C
  hgvsp: ENST00000538453.1:c.1065A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3612A>C
  hgvsp: ENST00000539144.1:c.3612A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2869A>C
  hgvsp: ENST00000538805.1:c.2869A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3612A>C
  hgvsp: ENST00000308149.7:c.3612A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1419A>C
  hgvsp: ENST00000543030.1:c.1419A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3612A>C
  hgvsp: ENST00000262510.6:c.3612A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1950T>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3612A>C
  hgvsp: ENST00000436936.1:c.3612A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala1204Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

16-57088960-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088960
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088960
    reference: chr 16
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3613A>G
  hgvsp: ENSP00000441727.1:p.Thr1205Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3613A>G
  hgvsp: ENSP00000308886.7:p.Thr1205Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.434A>G
  hgvsp: ENSP00000437583.1:p.Thr146Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2044A>G
  hgvsp: ENSP00000441597.1:p.Thr682Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2870A>G
  hgvsp: ENSP00000442906.1:p.Thr958Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2795A>G
  hgvsp: ENSP00000443825.1:p.Thr933Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.754A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3613A>G
  hgvsp: ENSP00000262510.6:p.Thr1205Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1066A>G
  hgvsp: ENSP00000444773.1:p.Thr356Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1420A>G
  hgvsp: ENSP00000440153.1:p.Thr474Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3613A>G
  hgvsp: ENSP00000389739.1:p.Thr1205Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.705A>G
  hgvsp: ENSP00000438548.1:p.Thr236Ala
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1951T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.661A>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1205Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

16-57088960-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088960
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088960
    reference: chr 16
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2870A>T
  hgvsp: ENSP00000442906.1:p.Thr958Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1066A>T
  hgvsp: ENSP00000444773.1:p.Thr356Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.661A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2795A>T
  hgvsp: ENSP00000443825.1:p.Thr933Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.705A>T
  hgvsp: ENSP00000438548.1:p.Thr236Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3613A>T
  hgvsp: ENSP00000441727.1:p.Thr1205Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3613A>T
  hgvsp: ENSP00000389739.1:p.Thr1205Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1420A>T
  hgvsp: ENSP00000440153.1:p.Thr474Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.754A>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3613A>T
  hgvsp: ENSP00000262510.6:p.Thr1205Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1951T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3613A>T
  hgvsp: ENSP00000308886.7:p.Thr1205Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2044A>T
  hgvsp: ENSP00000441597.1:p.Thr682Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.434A>T
  hgvsp: ENSP00000437583.1:p.Thr146Ser
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1205Ser
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-57088967-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088967
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088967
    reference: chr 16
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3620A>G
  hgvsp: ENSP00000389739.1:p.His1207Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3620A>G
  hgvsp: ENSP00000308886.7:p.His1207Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1427A>G
  hgvsp: ENSP00000440153.1:p.His476Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2877A>G
  hgvsp: ENSP00000442906.1:p.His960Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2802A>G
  hgvsp: ENSP00000443825.1:p.His935Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.441A>G
  hgvsp: ENSP00000437583.1:p.His148Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2051A>G
  hgvsp: ENSP00000441597.1:p.His684Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3620A>G
  hgvsp: ENSP00000262510.6:p.His1207Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3620A>G
  hgvsp: ENSP00000441727.1:p.His1207Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1073A>G
  hgvsp: ENSP00000444773.1:p.His358Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.761A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.668A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.712A>G
  hgvsp: ENSP00000438548.1:p.His238Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1958T>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His1207Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

16-57088968-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088968
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088968
    reference: chr 16
allele count: 8
allele frequency: 6.590220113351786e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2052C>G
  hgvsp: ENSP00000441597.1:p.His684Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.762C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2803C>G
  hgvsp: ENSP00000443825.1:p.His935Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3621C>G
  hgvsp: ENSP00000389739.1:p.His1207Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.442C>G
  hgvsp: ENSP00000437583.1:p.His148Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3621C>G
  hgvsp: ENSP00000441727.1:p.His1207Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1428C>G
  hgvsp: ENSP00000440153.1:p.His476Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1074C>G
  hgvsp: ENSP00000444773.1:p.His358Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3621C>G
  hgvsp: ENSP00000262510.6:p.His1207Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3621C>G
  hgvsp: ENSP00000308886.7:p.His1207Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.713C>G
  hgvsp: ENSP00000438548.1:p.His238Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2878C>G
  hgvsp: ENSP00000442906.1:p.His960Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.669C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1959G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.His1207Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum

16-57088975-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088975
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088975
    reference: chr 16
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.769T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3628T>A
  hgvsp: ENSP00000308886.7:p.Ser1210Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1435T>A
  hgvsp: ENSP00000440153.1:p.Ser479Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2885T>A
  hgvsp: ENSP00000442906.1:p.Ser963Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2059T>A
  hgvsp: ENSP00000441597.1:p.Ser687Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3628T>A
  hgvsp: ENSP00000441727.1:p.Ser1210Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1966A>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3628T>A
  hgvsp: ENSP00000389739.1:p.Ser1210Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1081T>A
  hgvsp: ENSP00000444773.1:p.Ser361Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.449T>A
  hgvsp: ENSP00000437583.1:p.Ser151Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.720T>A
  hgvsp: ENSP00000438548.1:p.Ser241Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.676T>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3628T>A
  hgvsp: ENSP00000262510.6:p.Ser1210Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2810T>A
  hgvsp: ENSP00000443825.1:p.Ser938Thr
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1210Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

16-57088978-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088978
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088978
    reference: chr 16
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1969T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.452A>G
  hgvsp: ENSP00000437583.1:p.Asn152Asp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3631A>G
  hgvsp: ENSP00000389739.1:p.Asn1211Asp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1438A>G
  hgvsp: ENSP00000440153.1:p.Asn480Asp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2813A>G
  hgvsp: ENSP00000443825.1:p.Asn939Asp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3631A>G
  hgvsp: ENSP00000308886.7:p.Asn1211Asp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.679A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3631A>G
  hgvsp: ENSP00000262510.6:p.Asn1211Asp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1084A>G
  hgvsp: ENSP00000444773.1:p.Asn362Asp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2062A>G
  hgvsp: ENSP00000441597.1:p.Asn688Asp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.772A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.723A>G
  hgvsp: ENSP00000438548.1:p.Asn242Asp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3631A>G
  hgvsp: ENSP00000441727.1:p.Asn1211Asp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2888A>G
  hgvsp: ENSP00000442906.1:p.Asn964Asp
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn1211Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

16-57088980-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088980
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088980
    reference: chr 16
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3633C>T
  hgvsp: ENST00000539144.1:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.681C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3633C>T
  hgvsp: ENST00000308149.7:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.454C>T
  hgvsp: ENST00000537056.1:c.454C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3633C>T
  hgvsp: ENST00000262510.6:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1086C>T
  hgvsp: ENST00000538453.1:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1971G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1440C>T
  hgvsp: ENST00000543030.1:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2064C>T
  hgvsp: ENST00000538110.1:c.2064C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3633C>T
  hgvsp: ENST00000436936.1:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2890C>T
  hgvsp: ENST00000538805.1:c.2890C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.725C>T
  hgvsp: ENST00000540182.1:c.725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.774C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2815C>T
  hgvsp: ENST00000545081.1:c.2815C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn1211Asn
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

16-57088981-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088981
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088981
    reference: chr 16
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.775G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1441G>A
  hgvsp: ENSP00000440153.1:p.Glu481Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2816G>A
  hgvsp: ENSP00000443825.1:p.Glu940Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3634G>A
  hgvsp: ENSP00000389739.1:p.Glu1212Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.682G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1972C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2065G>A
  hgvsp: ENSP00000441597.1:p.Glu689Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3634G>A
  hgvsp: ENSP00000441727.1:p.Glu1212Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.455G>A
  hgvsp: ENSP00000437583.1:p.Glu153Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3634G>A
  hgvsp: ENSP00000308886.7:p.Glu1212Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1087G>A
  hgvsp: ENSP00000444773.1:p.Glu363Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.726G>A
  hgvsp: ENSP00000438548.1:p.Glu243Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3634G>A
  hgvsp: ENSP00000262510.6:p.Glu1212Lys
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2891G>A
  hgvsp: ENSP00000442906.1:p.Glu965Lys
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu1212Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

16-57088996-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57088996
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57088996
    reference: chr 16
allele count: 33
allele frequency: 2.719092976500445e-4
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.790G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.697G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1456G>A
  hgvsp: ENSP00000440153.1:p.Val486Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2906G>A
  hgvsp: ENSP00000442906.1:p.Val970Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3649G>A
  hgvsp: ENSP00000308886.7:p.Val1217Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2080G>A
  hgvsp: ENSP00000441597.1:p.Val694Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3649G>A
  hgvsp: ENSP00000389739.1:p.Val1217Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.741G>A
  hgvsp: ENSP00000438548.1:p.Val248Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.470G>A
  hgvsp: ENSP00000437583.1:p.Val158Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-1987C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3649G>A
  hgvsp: ENSP00000441727.1:p.Val1217Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3649G>A
  hgvsp: ENSP00000262510.6:p.Val1217Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2831G>A
  hgvsp: ENSP00000443825.1:p.Val945Met
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1102G>A
  hgvsp: ENSP00000444773.1:p.Val368Met
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val1217Met
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-57089012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089012
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089012
    reference: chr 16
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2841+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2090+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1112+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2003G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.707+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3659+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.800+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1466+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.480+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2916+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+6C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3659+6C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3659+6C>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

16-57089015-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089015
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089015
    reference: chr 16
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.707+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3659+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2841+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3659+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2006G>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.480+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2090+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.800+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1112+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1466+9C>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2916+9C>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

16-57089017-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089017
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089017
    reference: chr 16
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.480+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2916+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2090+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2841+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.707+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3659+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1112+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.800+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3659+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2008A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1466+11T>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+11T>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12945
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/16-57089024-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089024
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089024
    reference: chr 16
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1112+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2090+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.800+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2916+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1466+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.480+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.707+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3659+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2015T>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2841+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+18A>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3659+18A>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

16-57089026-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089026
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089026
    reference: chr 16
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1466+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.800+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2090+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.480+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3659+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2841+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1112+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.707+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2916+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3659+20G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2017C>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

16-57089031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089031
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089031
    reference: chr 16
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.800+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1112+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2022C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.480+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2841+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2090+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.707+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3659+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3659+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1466+25G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2916+25G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

16-57089035-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089035
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089035
    reference: chr 16
allele count: 2
allele frequency: 1.649511744523621e-5
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.707+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3659+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3659+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2841+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2026C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2090+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1466+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.800+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.480+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2916+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+29G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1112+29G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12281
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

16-57089042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089042
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089042
    reference: chr 16
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3659+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.800+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3659+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.707+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2841+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2090+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1112+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.480+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1466+36G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2033C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2916+36G>A
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11687
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

16-57089042-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089042
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089042
    reference: chr 16
allele count: 138
allele frequency: 1.138181878165053e-3
allele num: 121246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3659+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1112+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3659+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.800+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2033C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2916+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2090+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.480+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1466+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2841+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+36G>C
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.707+36G>C
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11780
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

16-57089051-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089051
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089051
    reference: chr 16
allele count: 2
allele frequency: 1.650056101907465e-5
allele num: 121208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3659+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2916+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1466+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2841+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1112+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.800+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.480+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2090+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.707+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3659+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+45G>A
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2042C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

16-57089058-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089058
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089058
    reference: chr 16
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1112+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2090+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.800+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2841+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2049T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3659+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.707+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.480+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2916+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3659+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+52A>G
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1466+52A>G
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10055
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

16-57089303-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089303
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089303
    reference: chr 16
allele count: 1
allele frequency: 9.095208644086295e-6
allele num: 109948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1467-42C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+297C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+297C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2294G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3660-42C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1113-42C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3660-42C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2091-45C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2842-42C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+297C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.481-45C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.801-45C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.708-45C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2917-45C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

16-57089307-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57089307
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57089307
    reference: chr 16
allele count: 20
allele frequency: 1.812940771225004e-4
allele num: 110318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.3659+301C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000444773
  ensembl transcript: ENST00000538453
  gene symbol: NLRC5
  hgvsc: ENST00000538453.1:c.1113-38C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260145
  ensembl transcript: ENST00000562970
  gene symbol: RP11-322D14.2
  hgvsc: ENST00000562970.1:n.80-2298G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000438548
  ensembl transcript: ENST00000540182
  gene symbol: NLRC5
  hgvsc: ENST00000540182.1:c.751+301C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.3660-38C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.2917-41C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538778
  gene symbol: NLRC5
  hgvsc: ENST00000538778.1:n.708-41C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.3660-38C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441597
  ensembl transcript: ENST00000538110
  gene symbol: NLRC5
  hgvsc: ENST00000538110.1:c.2091-41C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.3659+301C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000437583
  ensembl transcript: ENST00000537056
  gene symbol: NLRC5
  hgvsc: ENST00000537056.1:c.481-41C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl transcript: ENST00000538930
  gene symbol: NLRC5
  hgvsc: ENST00000538930.1:n.801-41C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000440153
  ensembl transcript: ENST00000543030
  gene symbol: NLRC5
  hgvsc: ENST00000543030.1:c.1467-38C>T
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.2842-38C>T
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13138
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20062
  bin: 2.25e1
  variant carriers: 4
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 3027
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2208
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 348
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5223
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2770
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7631
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 3546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50681
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 793
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.623208506703652e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

QD
type: SiteQuality
SIO_000300: 1.162e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 4.072251e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.949e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

GenotypeDepth
all individuals: 33
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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South Asian
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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Other
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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MQ
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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MQ
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DP
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FS
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.049475262368816e-4
allele num: 66700
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 30
allele frequency: 1.816860465116279e-3
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

VQSLOD
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DP
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FS
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QD
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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SIO_000300: 9.24e-1

BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 4.071134e6

ReadPosRankSum
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QD
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SIO_000300: 7.11e0

BaseQRankSum
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SIO_000300: -6.237e0

MQ
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SIO_000300: 5.969e1

InbreedingCoeff
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SIO_000300: 1.0e-4

ClippingRankSum
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MQRankSum
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SIO_000300: -1.44e-1

FS
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VQSLOD
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
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SIO_000300: -1.15e0

BaseQRankSum
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SIO_000300: -1.194e0

MQ
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SIO_000300: 5.974e1

VQSLOD
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SIO_000300: 3.92e-1

InbreedingCoeff
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SIO_000300: 2.0e-4

DP
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SIO_000300: 4.071142e6

ReadPosRankSum
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SIO_000300: 1.78e0

MQRankSum
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SIO_000300: 2.06e-1

QD
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SIO_000300: 9.380000000000001e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 5.951e1

BaseQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 2.515e0

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
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DP
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SIO_000300: 4.071122e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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MQ
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VQSLOD
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FS
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 53

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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East Asian
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allele frequency: 6.124335567367691e-3
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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QD
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FS
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MQ
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VQSLOD
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BaseQRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.496402877697842e-5
allele num: 66720
num of homozygotes: 0

Other
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
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Latino
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allele frequency: 0.0e0
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South Asian
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allele num: 16512
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VQSLOD
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FS
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SIO_000300: 5.28e-1

InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.169e0

MQRankSum
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QD
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ReadPosRankSum
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SIO_000300: 1.21e0

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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African
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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South Asian
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66736
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Latino
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South Asian
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Other
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East Asian
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QD
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DP
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.498441620714457e-4
allele num: 66736
num of homozygotes: 0

African
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European (Finnish)
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East Asian
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Latino
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Other
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South Asian
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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MQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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African
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European (Finnish)
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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QD
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DP
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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QD
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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MQ
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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African
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MQRankSum
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FS
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ClippingRankSum
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MQ
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QD
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DP
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GenotypeQuality
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African
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East Asian
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MQRankSum
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QD
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DP
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MQ
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ReadPosRankSum
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African
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South Asian
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ClippingRankSum
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QD
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FS
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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Other
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FS
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VQSLOD
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MQRankSum
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QD
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DP
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ClippingRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Other
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East Asian
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African
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Latino
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European (Finnish)
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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South Asian
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African
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Latino
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Other
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East Asian
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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Latino
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QD
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MQ
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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Latino
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South Asian
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European (Finnish)
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East Asian
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African
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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QD
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FS
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VQSLOD
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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MQ
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VQSLOD
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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QD
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DP
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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FS
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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East Asian
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European (Non-Finnish)
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MQ
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DP
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QD
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ReadPosRankSum
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VQSLOD
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South Asian
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African
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Latino
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East Asian
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FS
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QD
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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InbreedingCoeff
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MQ
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FS
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QD
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DP
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European (Finnish)
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South Asian
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African
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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DP
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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MQ
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BaseQRankSum
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FS
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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African
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ReadPosRankSum
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ClippingRankSum
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DP
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FS
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MQ
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African
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele num: 66730
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African
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QD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66728
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South Asian
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Other
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African
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Latino
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European (Finnish)
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East Asian
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BaseQRankSum
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Other
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Latino
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allele frequency: 1.814411612234318e-3
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MQ
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Latino
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African
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East Asian
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Other
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South Asian
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DP
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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MQ
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DP
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Latino
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African
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European (Non-Finnish)
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QD
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DP
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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MQRankSum
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

DP
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QD
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

African
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num of homozygotes: 0

Other
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South Asian
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FS
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele num: 908
num of homozygotes: 0

QD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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SIO_000300: 1.65e0

FS
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SIO_000300: 7.837e0

VQSLOD
type: SiteQuality
SIO_000300: -7.702e-1

DP
type: SiteQuality
SIO_000300: 2.329677e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

MQRankSum
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InbreedingCoeff
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FS
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SIO_000300: 4.555e0

BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 5.34e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66678
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Latino
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African
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MQ
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SIO_000300: 5.963e1

VQSLOD
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DP
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InbreedingCoeff
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FS
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11548
num of homozygotes: 0

African
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 66678
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Other
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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allele num: 16504
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
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African
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Other
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 162
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1464
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5039
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4494
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21790
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3819
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6381
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.24e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.287995e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-1

GenotypeDepth
all individuals: 1671
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 146
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6447
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4316
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3565
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5834
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6095
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3220
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.648478454386601e-5
allele num: 60662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15212
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 1.216492e6

FS
type: SiteQuality
SIO_000300: 4.337e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -1.616e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.796e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1