14-64565536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565536
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565536
    reference: chr 14
allele count: 658
allele frequency: 5.615771955278655e-3
allele num: 117170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12378C>T
  hgvsp: ENST00000344113.4:c.12378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13766G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12378C>T
  hgvsp: ENST00000358025.3:c.12378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2280C>T
  hgvsp: ENST00000555002.1:c.2280C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12477C>T
  hgvsp: ENST00000554584.1:c.12477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.274C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1533C>T
  hgvsp: ENST00000357395.3:c.1533C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.54C>T
  hgvsp: ENST00000553308.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13766G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1533C>T
  hgvsp: ENST00000394768.2:c.1533C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1661C>T
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 3.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 3.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 9.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 26716
  bin: 2.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 15283
  bin: 2.75e1
  variant carriers: 95
genotype quality: GenotypeQuality
hgvs: p.Ser4126Ser
num of homozygotes: 3
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

14-64565537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565537
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565537
    reference: chr 14
allele count: 14
allele frequency: 1.20015087611014e-4
allele num: 116652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.55G>A
  hgvsp: ENSP00000451520.1:p.Asp19Asn
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12379G>A
  hgvsp: ENSP00000350719.3:p.Asp4127Asn
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13767C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12478G>A
  hgvsp: ENSP00000452570.1:p.Asp4160Asn
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2281G>A
  hgvsp: ENSP00000450831.1:p.Asp761Asn
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12379G>A
  hgvsp: ENSP00000341781.4:p.Asp4127Asn
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1662G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1534G>A
  hgvsp: ENSP00000349969.3:p.Asp512Asn
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13767C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.275G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1534G>A
  hgvsp: ENSP00000378249.2:p.Asp512Asn
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15277
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26078
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp4127Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

14-64565540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565540
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565540
    reference: chr 14
allele count: 1
allele frequency: 8.596826051821667e-6
allele num: 116322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13770C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13770C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1665G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+1G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
hgvs: c.12381+1G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

14-64565541-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565541
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565541
    reference: chr 14
allele count: 1
allele frequency: 8.614451604010888e-6
allele num: 116084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+2T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+2T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1666T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+2T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+2T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+2T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+2T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13771A>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13771A>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+2T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+2T>G
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
hgvs: c.12381+2T>G
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

14-64565543-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565543
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565542
    reference: chr 14
allele count: 1
allele frequency: 8.64528399757932e-6
allele num: 115670
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+7delG
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+7delG
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+7delG
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+7delG
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1671delG
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13774delC
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+7delG
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13774delC
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+7delG
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+7delG
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+7delG
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24558
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.12381+7delG
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: AG
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

14-64565544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565544
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565544
    reference: chr 14
allele count: 2
allele frequency: 1.732111617272617e-5
allele num: 115466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1669G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+5G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13774C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+5G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+5G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+5G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+5G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+5G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13774C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+5G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+5G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.12381+5G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

14-64565545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565545
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565545
    reference: chr 14
allele count: 2
allele frequency: 1.734906315058987e-5
allele num: 115280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13775C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+6G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+6G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+6G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+6G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+6G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1670G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+6G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+6G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13775C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+6G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14798
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.12381+6G>A
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

14-64565546-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565546
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565547
    reference: chr 14
allele count: 1
allele frequency: 8.695652173913043e-6
allele num: 115000
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+10dupA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+10dupA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1674dupA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+10dupA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+10dupA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+10dupA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+10dupA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+10dupA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13777dupT
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13777dupT
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+10dupA
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.12381+10dupA
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

14-64565551-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565551
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565551
    reference: chr 14
allele count: 2
allele frequency: 1.761307594758349e-5
allele num: 113552
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+12G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13781C>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+12G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13781C>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+12G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1676G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+12G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+12G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+12G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+12G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+12G>T
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20940
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6914
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-64565557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565557
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565557
    reference: chr 14
allele count: 1
allele frequency: 8.98763301696865e-6
allele num: 111264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1682C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+18C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+18C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+18C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+18C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13787G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+18C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+18C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+18C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13787G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+18C>T
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

14-64565566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565566
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565566
    reference: chr 14
allele count: 1
allele frequency: 9.290917199345919e-6
allele num: 107632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+27G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1691G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+27G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+27G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+27G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+27G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+27G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+27G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13796C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13796C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+27G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12726
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

14-64565579-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565579
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565579
    reference: chr 14
allele count: 2
allele frequency: 1.970521005753921e-5
allele num: 101496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+40A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+40A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+40A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+40A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13809T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+40A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+40A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+40A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13809T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1704A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+40A>G
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13296
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3393
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

14-64565580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565580
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565580
    reference: chr 14
allele count: 1
allele frequency: 9.863100169645323e-6
allele num: 101388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1705G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13810C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13810C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+41G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9658
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4758
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

14-64565582-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565582
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565582
    reference: chr 14
allele count: 43192
allele frequency: 4.354998084252556e-1
allele num: 99178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13812A>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+43T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+43T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+43T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+43T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1707T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+43T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+43T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+43T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+43T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13812A>G
  variant of: http://identifiers.org/hgnc/3468
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 2.25e1
  variant carriers: 6310
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.25e1
  variant carriers: 516
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 7.5e0
  variant carriers: 2109
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 3.75e1
  variant carriers: 938
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 2.5e0
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 1.75e1
  variant carriers: 8885
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 345
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 13711
  bin: 1.25e1
  variant carriers: 7234
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 3.25e1
  variant carriers: 1733
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 2.75e1
  variant carriers: 3417
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 9.75e1
  variant carriers: 4149
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 185
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 1.25e1
  variant carriers: 170
num of homozygotes: 8426
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/14-64565590-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565590
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565590
    reference: chr 14
allele count: 1
allele frequency: 1.334543319276144e-5
allele num: 74932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+51A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+51A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+51A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+51A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+51A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1715A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+51A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+51A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13820T>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+51A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13820T>G
  variant of: http://identifiers.org/hgnc/3468
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

14-64565596-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565596
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565596
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 69692
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+57C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+57C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13826G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+57C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+57C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+57C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1721C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13826G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+57C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+57C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+57C>T
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19531
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-64565597-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565597
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565597
    reference: chr 14
allele count: 5
allele frequency: 7.221050807313481e-5
allele num: 69242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+58A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+58A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+58A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13827T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+58A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+58A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+58A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+58A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+58A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1722A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13827T>C
  variant of: http://identifiers.org/hgnc/3468
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6438
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-64565609-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565609
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565609
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 57382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+70T>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13839A>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+70T>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+70T>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+70T>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1734T>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+70T>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+70T>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+70T>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+70T>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13839A>T
  variant of: http://identifiers.org/hgnc/3468
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18472
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

14-64565616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565616
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565616
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 48916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13846C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+77G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+77G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+77G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+77G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+77G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+77G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13846C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1741G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+77G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+77G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17004
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

14-64565632-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565632
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565633
    reference: chr 14
allele count: 4
allele frequency: 1.575299306868305e-4
allele num: 25392
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+98dupT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13863dupA
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+98dupT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+98dupT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+98dupT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+98dupT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1762dupT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13863dupA
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+98dupT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+98dupT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+98dupT
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10659
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

14-64565638-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565638
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565638
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 23480
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+99A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+99A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+99A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13868T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+99A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13868T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+99A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1763A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+99A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+99A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+99A>G
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33392
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-64565643-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565643
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565643
    reference: chr 14
allele count: 1
allele frequency: 4.659832246039143e-5
allele num: 21460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+104T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+104T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+104T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+104T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13873A>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1768T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+104T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+104T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13873A>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+104T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+104T>C
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

14-64565645-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565645
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565645
    reference: chr 14
allele count: 1
allele frequency: 4.6988065031482e-5
allele num: 21282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+106A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+106A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+106A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13875T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+106A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13875T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+106A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1770A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+106A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+106A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+106A>G
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

14-64565647-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565647
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565647
    reference: chr 14
allele count: 4
allele frequency: 1.919570016316345e-4
allele num: 20838
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+108G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+108G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13877C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1772G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+108G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+108G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+108G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13877C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+108G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+108G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+108G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

14-64565651-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565651
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565651
    reference: chr 14
allele count: 20
allele frequency: 9.898050084133426e-4
allele num: 20206
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+112A>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1776A>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+112A>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13881T>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+112A>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+112A>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+112A>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+112A>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13881T>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+112A>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+112A>T
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ

14-64565654-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565654
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565654
    reference: chr 14
allele count: 1
allele frequency: 4.997501249375312e-5
allele num: 20010
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+115T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+115T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+115T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13884A>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13884A>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+115T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+115T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+115T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1779T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+115T>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+115T>G
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32765
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP

14-64565659-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64565659
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64565659
    reference: chr 14
allele count: 33
allele frequency: 1.676829268292683e-3
allele num: 19680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000557060
  gene symbol: SYNE2
  hgvsc: ENST00000557060.1:n.1784A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-13889T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.57+120A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1536+120A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12381+120A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.277+120A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2283+120A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12480+120A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1536+120A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-13889T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12381+120A>G
  variant of: http://identifiers.org/hgnc/17084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32100
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 9.75e1
  variant carriers: 33
num of homozygotes: 1
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

14-64568600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568600
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568600
    reference: chr 14
allele count: 1
allele frequency: 8.693082045308344e-6
allele num: 115034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1537-50G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12382-50G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1537-50G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2284-50G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16830C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16830C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.278-50G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12382-50G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-104G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.58-50G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13613
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4095
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/14-64568603-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568603
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568603
    reference: chr 14
allele count: 1
allele frequency: 8.676187336236963e-6
allele num: 115258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-101A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.278-47A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16833T>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2284-47A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12382-47A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1537-47A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.58-47A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16833T>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1537-47A>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12382-47A>C
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5017
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4988
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4724
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

14-64568609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568609
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568609
    reference: chr 14
allele count: 1
allele frequency: 8.654711625008655e-6
allele num: 115544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.58-41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12382-41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2284-41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.278-41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16839C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-95G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12382-41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1537-41G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16839C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1537-41G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18936
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6910
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

14-64568616-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568616
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568616
    reference: chr 14
allele count: 1
allele frequency: 8.61460002412088e-6
allele num: 116082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12382-34C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16846G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-88C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12382-34C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16846G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.278-34C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2284-34C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1537-34C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1537-34C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.58-34C>T
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10574
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28498
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

14-64568621-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568621
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568620
    reference: chr 14
allele count: 1
allele frequency: 8.568833439015613e-6
allele num: 116702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1537-26delT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16852delA
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2284-26delT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12382-26delT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.278-26delT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1537-26delT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16852delA
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.58-26delT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-80delT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12382-26delT
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: CT
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

14-64568626-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568626
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568626
    reference: chr 14
allele count: 1
allele frequency: 8.502244592572439e-6
allele num: 117616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16856G>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1537-24C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1537-24C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2284-24C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.278-24C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12382-24C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-78C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.58-24C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12382-24C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16856G>C
  variant of: http://identifiers.org/hgnc/3468
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

14-64568633-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568633
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568633
    reference: chr 14
allele count: 4
allele frequency: 3.361005612879374e-5
allele num: 119012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.278-17A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.58-17A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12382-17A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2284-17A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1537-17A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16863T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12382-17A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16863T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-71A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1537-17A>G
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12677
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6652
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

14-64568635-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568635
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568635
    reference: chr 14
allele count: 2
allele frequency: 1.67768345468577e-5
allele num: 119212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12382-15C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1537-15C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.278-15C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16865G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16865G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1537-15C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2284-15C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12382-15C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.58-15C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-69C>T
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

14-64568636-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568636
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568636
    reference: chr 14
allele count: 12
allele frequency: 1.003394819138084e-4
allele num: 119594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-68G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.58-14G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12382-14G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1537-14G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2284-14G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12382-14G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.278-14G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16866C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1537-14G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16866C>T
  variant of: http://identifiers.org/hgnc/3468
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

14-64568636-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568636
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568636
    reference: chr 14
allele count: 1
allele frequency: 8.361623492817366e-6
allele num: 119594
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16866C>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.58-14G>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-68G>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12382-14G>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12382-14G>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.278-14G>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16866C>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2284-14G>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1537-14G>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1537-14G>C
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5689
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

14-64568636-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568636
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568636
    reference: chr 14
allele count: 3963
allele frequency: 3.313711390203522e-2
allele num: 119594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1537-14G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2284-14G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12382-14G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12382-14G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.58-14G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1537-14G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16866C>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-68G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16866C>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.278-14G>T
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 3.25e1
  variant carriers: 491
genotype depth: GenotypeDepth
  all individuals: 29323
  bin: 2.25e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 620
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 5.25e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 12586
  bin: 2.75e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 4.25e1
  variant carriers: 558
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.75e1
  variant carriers: 483
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 9884
  bin: 9.75e1
  variant carriers: 3653
num of homozygotes: 216
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

14-64568651-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568651
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568651
    reference: chr 14
allele count: 1
allele frequency: 8.284317786430287e-6
allele num: 120710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16881T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.59A>G
  hgvsp: ENSP00000451520.1:p.Asn20Ser
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16881T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12383A>G
  hgvsp: ENSP00000341781.4:p.Asn4128Ser
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1538A>G
  hgvsp: ENSP00000378249.2:p.Asn513Ser
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.279A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1538A>G
  hgvsp: ENSP00000349969.3:p.Asn513Ser
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-53A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2285A>G
  hgvsp: ENSP00000450831.1:p.Asn762Ser
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12383A>G
  hgvsp: ENSP00000350719.3:p.Asn4128Ser
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn4128Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

14-64568653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568653
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568653
    reference: chr 14
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12385G>A
  hgvsp: ENSP00000350719.3:p.Gly4129Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1540G>A
  hgvsp: ENSP00000349969.3:p.Gly514Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16883C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-51G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1540G>A
  hgvsp: ENSP00000378249.2:p.Gly514Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2287G>A
  hgvsp: ENSP00000450831.1:p.Gly763Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.281G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12385G>A
  hgvsp: ENSP00000341781.4:p.Gly4129Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.61G>A
  hgvsp: ENSP00000451520.1:p.Gly21Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16883C>T
  variant of: http://identifiers.org/hgnc/3468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly4129Arg
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

14-64568660-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568660
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568660
    reference: chr 14
allele count: 1
allele frequency: 8.268426187759421e-6
allele num: 120942
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12392A>G
  hgvsp: ENSP00000350719.3:p.Glu4131Gly
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16890T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2294A>G
  hgvsp: ENSP00000450831.1:p.Glu765Gly
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16890T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1547A>G
  hgvsp: ENSP00000349969.3:p.Glu516Gly
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-44A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.288A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.68A>G
  hgvsp: ENSP00000451520.1:p.Glu23Gly
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1547A>G
  hgvsp: ENSP00000378249.2:p.Glu516Gly
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12392A>G
  hgvsp: ENSP00000341781.4:p.Glu4131Gly
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30548
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu4131Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

14-64568661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568661
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568661
    reference: chr 14
allele count: 1
allele frequency: 8.267059076404159e-6
allele num: 120962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16891C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1548G>A
  hgvsp: ENST00000394768.2:c.1548G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-43G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1548G>A
  hgvsp: ENST00000357395.3:c.1548G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12393G>A
  hgvsp: ENST00000358025.3:c.12393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.289G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12393G>A
  hgvsp: ENST00000344113.4:c.12393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.69G>A
  hgvsp: ENST00000553308.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16891C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2295G>A
  hgvsp: ENST00000555002.1:c.2295G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6522
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu4131Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

14-64568665-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568665
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568665
    reference: chr 14
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1552G>A
  hgvsp: ENSP00000349969.3:p.Ala518Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12397G>A
  hgvsp: ENSP00000350719.3:p.Ala4133Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16895C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16895C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-39G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12397G>A
  hgvsp: ENSP00000341781.4:p.Ala4133Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1552G>A
  hgvsp: ENSP00000378249.2:p.Ala518Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2299G>A
  hgvsp: ENSP00000450831.1:p.Ala767Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.73G>A
  hgvsp: ENSP00000451520.1:p.Ala25Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.293G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala4133Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

14-64568665-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568665
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568665
    reference: chr 14
allele count: 3
allele frequency: 2.479052010511181e-5
allele num: 121014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12397G>C
  hgvsp: ENSP00000341781.4:p.Ala4133Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16895C>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1552G>C
  hgvsp: ENSP00000349969.3:p.Ala518Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16895C>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1552G>C
  hgvsp: ENSP00000378249.2:p.Ala518Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.293G>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2299G>C
  hgvsp: ENSP00000450831.1:p.Ala767Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.73G>C
  hgvsp: ENSP00000451520.1:p.Ala25Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12397G>C
  hgvsp: ENSP00000350719.3:p.Ala4133Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-39G>C
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40911
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala4133Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

14-64568665-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568665
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568665
    reference: chr 14
allele count: 3
allele frequency: 2.479052010511181e-5
allele num: 121014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12397G>T
  hgvsp: ENSP00000341781.4:p.Ala4133Ser
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1552G>T
  hgvsp: ENSP00000349969.3:p.Ala518Ser
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.73G>T
  hgvsp: ENSP00000451520.1:p.Ala25Ser
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.293G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16895C>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-39G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1552G>T
  hgvsp: ENSP00000378249.2:p.Ala518Ser
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12397G>T
  hgvsp: ENSP00000350719.3:p.Ala4133Ser
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2299G>T
  hgvsp: ENSP00000450831.1:p.Ala767Ser
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16895C>A
  variant of: http://identifiers.org/hgnc/3468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala4133Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

14-64568675-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568675
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568675
    reference: chr 14
allele count: 4
allele frequency: 3.303055326176714e-5
allele num: 121100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1562C>T
  hgvsp: ENSP00000349969.3:p.Ser521Leu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.83C>T
  hgvsp: ENSP00000451520.1:p.Ser28Leu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12407C>T
  hgvsp: ENSP00000350719.3:p.Ser4136Leu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1562C>T
  hgvsp: ENSP00000378249.2:p.Ser521Leu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16905G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.303C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2309C>T
  hgvsp: ENSP00000450831.1:p.Ser770Leu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-29C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16905G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12407C>T
  hgvsp: ENSP00000341781.4:p.Ser4136Leu
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser4136Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

14-64568676-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568676
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568676
    reference: chr 14
allele count: 2
allele frequency: 1.651391297167864e-5
allele num: 121110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16906C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16906C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1563G>A
  hgvsp: ENST00000394768.2:c.1563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.304G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.84G>A
  hgvsp: ENST00000553308.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12408G>A
  hgvsp: ENST00000358025.3:c.12408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-28G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2310G>A
  hgvsp: ENST00000555002.1:c.2310G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1563G>A
  hgvsp: ENST00000357395.3:c.1563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12408G>A
  hgvsp: ENST00000344113.4:c.12408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41076
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser4136Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

14-64568678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568678
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568678
    reference: chr 14
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2312C>T
  hgvsp: ENSP00000450831.1:p.Pro771Leu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16908G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16908G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12481-26C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.86C>T
  hgvsp: ENSP00000451520.1:p.Pro29Leu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12410C>T
  hgvsp: ENSP00000341781.4:p.Pro4137Leu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12410C>T
  hgvsp: ENSP00000350719.3:p.Pro4137Leu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1565C>T
  hgvsp: ENSP00000378249.2:p.Pro522Leu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1565C>T
  hgvsp: ENSP00000349969.3:p.Pro522Leu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.306C>T
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro4137Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

14-64568705-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568705
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568705
    reference: chr 14
allele count: 2
allele frequency: 1.650464605786529e-5
allele num: 121178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.333A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2339A>G
  hgvsp: ENSP00000450831.1:p.His780Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16935T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12437A>G
  hgvsp: ENSP00000341781.4:p.His4146Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1592A>G
  hgvsp: ENSP00000349969.3:p.His531Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.113A>G
  hgvsp: ENSP00000451520.1:p.His38Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12437A>G
  hgvsp: ENSP00000350719.3:p.His4146Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12482A>G
  hgvsp: ENSP00000452570.1:p.His4161Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1592A>G
  hgvsp: ENSP00000378249.2:p.His531Arg
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16935T>C
  variant of: http://identifiers.org/hgnc/3468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His4146Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

14-64568727-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568727
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568727
    reference: chr 14
allele count: 7
allele frequency: 5.784454691192755e-5
allele num: 121014
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2361C>G
  hgvsp: ENSP00000450831.1:p.Asp787Glu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12459C>G
  hgvsp: ENSP00000350719.3:p.Asp4153Glu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16957G>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1614C>G
  hgvsp: ENSP00000349969.3:p.Asp538Glu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.135C>G
  hgvsp: ENSP00000451520.1:p.Asp45Glu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12459C>G
  hgvsp: ENSP00000341781.4:p.Asp4153Glu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16957G>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12504C>G
  hgvsp: ENSP00000452570.1:p.Asp4168Glu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1614C>G
  hgvsp: ENSP00000378249.2:p.Asp538Glu
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.355C>G
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp4153Glu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

14-64568727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568727
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568727
    reference: chr 14
allele count: 39
allele frequency: 3.222767613664535e-4
allele num: 121014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16957G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12459C>T
  hgvsp: ENST00000358025.3:c.12459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16957G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.355C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12504C>T
  hgvsp: ENST00000554584.1:c.12504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2361C>T
  hgvsp: ENST00000555002.1:c.2361C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.135C>T
  hgvsp: ENST00000553308.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1614C>T
  hgvsp: ENST00000357395.3:c.1614C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1614C>T
  hgvsp: ENST00000394768.2:c.1614C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12459C>T
  hgvsp: ENST00000344113.4:c.12459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15317
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6479
  bin: 9.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp4153Asp
num of homozygotes: 1
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

14-64568734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568734
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568734
    reference: chr 14
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16964A>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12466T>C
  hgvsp: ENSP00000350719.3:p.Ser4156Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16964A>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2368T>C
  hgvsp: ENSP00000450831.1:p.Ser790Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.142T>C
  hgvsp: ENSP00000451520.1:p.Ser48Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12511T>C
  hgvsp: ENSP00000452570.1:p.Ser4171Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12466T>C
  hgvsp: ENSP00000341781.4:p.Ser4156Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1621T>C
  hgvsp: ENSP00000349969.3:p.Ser541Pro
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.362T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1621T>C
  hgvsp: ENSP00000378249.2:p.Ser541Pro
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser4156Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

14-64568739-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568739
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568739
    reference: chr 14
allele count: 1
allele frequency: 8.27348843366317e-6
allele num: 120868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16969T>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1626A>T
  hgvsp: ENST00000394768.2:c.1626A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12471A>T
  hgvsp: ENST00000358025.3:c.12471A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.147A>T
  hgvsp: ENST00000553308.1:c.147A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12516A>T
  hgvsp: ENST00000554584.1:c.12516A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16969T>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1626A>T
  hgvsp: ENST00000357395.3:c.1626A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12471A>T
  hgvsp: ENST00000344113.4:c.12471A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2373A>T
  hgvsp: ENST00000555002.1:c.2373A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.367A>T
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6443
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser4157Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

14-64568752-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568752
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568752
    reference: chr 14
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1639A>G
  hgvsp: ENSP00000378249.2:p.Ile547Val
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2386A>G
  hgvsp: ENSP00000450831.1:p.Ile796Val
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.160A>G
  hgvsp: ENSP00000451520.1:p.Ile54Val
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12484A>G
  hgvsp: ENSP00000341781.4:p.Ile4162Val
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12484A>G
  hgvsp: ENSP00000350719.3:p.Ile4162Val
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12529A>G
  hgvsp: ENSP00000452570.1:p.Ile4177Val
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1639A>G
  hgvsp: ENSP00000349969.3:p.Ile547Val
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16982T>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.380A>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16982T>C
  variant of: http://identifiers.org/hgnc/3468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile4162Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

14-64568753-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568753
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568753
    reference: chr 14
allele count: 2
allele frequency: 1.658182300562124e-5
allele num: 120614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.161T>C
  hgvsp: ENSP00000451520.1:p.Ile54Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16983A>G
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1640T>C
  hgvsp: ENSP00000349969.3:p.Ile547Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.381T>C
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12530T>C
  hgvsp: ENSP00000452570.1:p.Ile4177Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12485T>C
  hgvsp: ENSP00000341781.4:p.Ile4162Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12485T>C
  hgvsp: ENSP00000350719.3:p.Ile4162Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2387T>C
  hgvsp: ENSP00000450831.1:p.Ile796Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1640T>C
  hgvsp: ENSP00000378249.2:p.Ile547Thr
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16983A>G
  variant of: http://identifiers.org/hgnc/3468
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile4162Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

14-64568761-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568761
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568761
    reference: chr 14
allele count: 1
allele frequency: 8.330834083108401e-6
allele num: 120036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000054654
  ensembl transcript: ENST00000555323
  gene symbol: SYNE2
  hgvsc: ENST00000555323.1:n.389G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+1G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16991C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16991C>T
  variant of: http://identifiers.org/hgnc/3468
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15110
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: c.12492+1G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

14-64568767-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568767
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568767
    reference: chr 14
allele count: 1
allele frequency: 8.365680631776201e-6
allele num: 119536
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+7C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16997G>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+7C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+7C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+7C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+7C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16997G>C
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+7C>G
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+7C>G
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14814
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6235
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 2.25e1
  variant carriers: 0
hgvs: c.12492+7C>G
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

14-64568769-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568769
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568769
    reference: chr 14
allele count: 1
allele frequency: 8.37885846432282e-6
allele num: 119348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+9G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-16999C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+9G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+9G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-16999C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+9G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+9G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+9G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+9G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

14-64568772-C-CGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568772
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568774
    reference: chr 14
allele count: 1
allele frequency: 8.397010664203544e-6
allele num: 119090
alternate allele: CGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+13_12492+14dupGT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-17004_1407-17003dupAC
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+13_1647+14dupGT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-17004_*1-17003dupAC
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+13_2394+14dupGT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+13_168+14dupGT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+13_12537+14dupGT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+13_12492+14dupGT
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+13_1647+14dupGT
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24857
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

14-64568772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568772
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568772
    reference: chr 14
allele count: 9
allele frequency: 7.557309597783189e-5
allele num: 119090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-17002G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+12C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-17002G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+12C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+12C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+12C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+12C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+12C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+12C>T
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24857
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14527
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

14-64568773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568773
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568773
    reference: chr 14
allele count: 6
allele frequency: 5.045917852457362e-5
allele num: 118908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-17003C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+13G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+13G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+13G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+13G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+13G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-17003C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+13G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+13G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24125
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14514
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6438
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3595
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

14-64568777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568777
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568777
    reference: chr 14
allele count: 1
allele frequency: 8.44095551616443e-6
allele num: 118470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-17007G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+17C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+17C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+17C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-17007G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+17C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+17C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+17C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+17C>T
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14042
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

14-64568783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568783
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568783
    reference: chr 14
allele count: 68
allele frequency: 5.76495922139139e-4
allele num: 117954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-17013G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+23C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-17013G>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+23C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+23C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+23C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+23C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+23C>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+23C>T
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13313
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19203
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

14-64568784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568784
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568784
    reference: chr 14
allele count: 10
allele frequency: 8.487379267029927e-5
allele num: 117822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+24G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+24G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-17014C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+24G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+24G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-17014C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+24G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+24G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+24G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13152
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18536
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

14-64568792-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568792
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568792
    reference: chr 14
allele count: 7
allele frequency: 5.994895774454893e-5
allele num: 116766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+32G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+32G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-17022C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-17022C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+32G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+32G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+32G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+32G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+32G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13648
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11117
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

14-64568797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568797
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568797
    reference: chr 14
allele count: 11941
allele frequency: 1.037499782786244e-1
allele num: 115094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-17027C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+37G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+37G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+37G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+37G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-17027C>T
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+37G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+37G>A
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+37G>A
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 3.25e1
  variant carriers: 1041
genotype depth: GenotypeDepth
  all individuals: 10598
  bin: 2.25e1
  variant carriers: 2272
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 9371
  bin: 2.75e1
  variant carriers: 1713
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 3.75e1
  variant carriers: 636
genotype depth: GenotypeDepth
  all individuals: 11328
  bin: 1.25e1
  variant carriers: 1026
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 313
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 7.5e0
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.75e1
  variant carriers: 357
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 12868
  bin: 1.75e1
  variant carriers: 2206
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 6.75e1
  variant carriers: 231
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 4.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 4.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 9.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 7350
  bin: 2.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 8.75e1
  variant carriers: 60
num of homozygotes: 702
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-64568804-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568804
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568803
    reference: chr 14
allele count: 7
allele frequency: 6.34080944961774e-5
allele num: 110396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+45delA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+45delA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+45delA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-17035delT
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+45delA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-17035delT
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+45delA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+45delA
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+45delA
  variant of: http://identifiers.org/hgnc/17084
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14802
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12189
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11524
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4922
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: CA
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

14-64568806-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568806
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568806
    reference: chr 14
allele count: 1
allele frequency: 9.081002542680711e-6
allele num: 110120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  hgvsc: ENST00000542956.1:c.1407-17036C>A
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  hgvsc: ENST00000554584.1:c.12537+46G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  hgvsc: ENST00000357395.3:c.1647+46G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  hgvsc: ENST00000553308.1:c.168+46G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  hgvsc: ENST00000394768.2:c.1647+46G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  hgvsc: ENST00000344113.4:c.12492+46G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  hgvsc: ENST00000555002.1:c.2394+46G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  hgvsc: ENST00000358025.3:c.12492+46G>T
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  hgvsc: ENST00000556275.1:c.*1-17036C>A
  variant of: http://identifiers.org/hgnc/3468
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11516
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4914
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5754
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

14-64568806-GGGGGGAGCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64568806
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 64568797
    reference: chr 14
allele count: 8
allele frequency: 7.264802034144569e-5
allele num: 110120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000452570
  ensembl transcript: ENST00000554584
  gene symbol: SYNE2
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000450831
  ensembl transcript: ENST00000555002
  gene symbol: SYNE2
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000350719
  ensembl transcript: ENST00000358025
  gene symbol: SYNE2
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000378249
  ensembl transcript: ENST00000394768
  gene symbol: SYNE2
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000451520
  ensembl transcript: ENST00000553308
  gene symbol: SYNE2
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000349969
  ensembl transcript: ENST00000357395
  gene symbol: SYNE2
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000452485
  ensembl transcript: ENST00000556275
  gene symbol: ESR2
  variant of: http://identifiers.org/hgnc/3468
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000054654
  ensembl protein: ENSP00000341781
  ensembl transcript: ENST00000344113
  gene symbol: SYNE2
  variant of: http://identifiers.org/hgnc/17084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140009
  ensembl protein: ENSP00000441792
  ensembl transcript: ENST00000542956
  gene symbol: ESR2
  variant of: http://identifiers.org/hgnc/3468
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: GGGGGGAGCA

GenotypeQuality
all individuals: 1295
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3845
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 778
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37846
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 214
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7435
bin: 9.75e1
variant carriers: 643

GenotypeQuality
all individuals: 169
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 458
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 11
allele frequency: 1.1e-3
allele num: 10000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 6.976744186046512e-3
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 45
allele frequency: 6.96594427244582e-3
allele num: 6460
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.443522194153735e-3
allele num: 11084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 540
allele frequency: 8.312040144075362e-3
allele num: 64966
num of homozygotes: 3

South Asian
type: Population
allele count: 40
allele frequency: 2.615404733882568e-3
allele num: 15294
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

DP
type: SiteQuality
SIO_000300: 1.925636e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

FS
type: SiteQuality
SIO_000300: 1.244e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e-1

GenotypeDepth
all individuals: 262
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3360
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4653
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6927
bin: 9.75e1
variant carriers: 14

African
type: Population
allele count: 1
allele frequency: 1.004823151125402e-4
allele num: 9952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.574621959237344e-5
allele num: 15210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.854828737479906e-4
allele num: 64696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.249e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.277e1

DP
type: SiteQuality
SIO_000300: 1.903366e6

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4817
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6914
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.008267795926598e-4
allele num: 9918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 1.668e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.767e0

DP
type: SiteQuality
SIO_000300: 1.894007e6

QD
type: SiteQuality
SIO_000300: 1.542e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.614e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: -3.59e-1

GenotypeQuality
all individuals: 935
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6914
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5071
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36129
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4621
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553422189082549e-5
allele num: 64374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 5.796e1

VQSLOD
type: SiteQuality
SIO_000300: -2.225e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

DP
type: SiteQuality
SIO_000300: 1.888456e6

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 6.011e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

QD
type: SiteQuality
SIO_000300: 1.204e1

GenotypeDepth
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6913
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35299
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5463
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559040878051823e-5
allele num: 64142
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.005e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

DP
type: SiteQuality
SIO_000300: 1.880147e6

QD
type: SiteQuality
SIO_000300: 1.491e1

GenotypeDepth
all individuals: 253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5709
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6911
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4539
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.187084520417854e-4
allele num: 8424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.182033096926714e-3
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15046
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.745e1

FS
type: SiteQuality
SIO_000300: 1.156e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.87596e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.054e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.036e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

GenotypeDepth
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34533
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6916
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 258
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5955
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4524
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.129204869042776e-5
allele num: 63914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.022e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

QD
type: SiteQuality
SIO_000300: 2.565e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.871114e6

GenotypeDepth
all individuals: 23486
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6254
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6913
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.672894701721607e-5
allele num: 14986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.032e1

MQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.864481e6

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 2.853e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

GenotypeQuality
all individuals: 356
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
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variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.348254011055683e-4
allele num: 14834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.747e0

QD
type: SiteQuality
SIO_000300: 7.73e0

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.085e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.82902e6

FS
type: SiteQuality
SIO_000300: 4.247e0

MQ
type: SiteQuality
SIO_000300: 5.892e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

GenotypeQuality
all individuals: 140
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.626122024196696e-5
allele num: 61496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

DP
type: SiteQuality
SIO_000300: 1.774642e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.025e0

FS
type: SiteQuality
SIO_000300: 6.983e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.955e0

QD
type: SiteQuality
SIO_000300: 2.544e1

GenotypeQuality
all individuals: 2607
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 305
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variant carriers: 0

GenotypeQuality
all individuals: 4364
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.682991686021071e-5
allele num: 59418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14228
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 3.45e0

VQSLOD
type: SiteQuality
SIO_000300: -2.518e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e0

DP
type: SiteQuality
SIO_000300: 1.692711e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

FS
type: SiteQuality
SIO_000300: 4.409e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 992
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2622
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variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.587572648346129e-5
allele num: 55748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.155e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

FS
type: SiteQuality
SIO_000300: 3.979e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

QD
type: SiteQuality
SIO_000300: 6.52e0

DP
type: SiteQuality
SIO_000300: 1.602874e6

GenotypeQuality
all individuals: 3384
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2238
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GenotypeQuality
all individuals: 4383
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6910
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 449
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.796041524480046e-5
allele num: 55678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8840
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.762e0

DP
type: SiteQuality
SIO_000300: 1.60247e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

QD
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.271e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.504e0

GenotypeQuality
all individuals: 1092
bin: 2.5e0
variant carriers: 108

GenotypeQuality
all individuals: 588
bin: 1.75e1
variant carriers: 263

GenotypeQuality
all individuals: 619
bin: 9.25e1
variant carriers: 480

GenotypeQuality
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variant carriers: 142

GenotypeQuality
all individuals: 1053
bin: 4.75e1
variant carriers: 938

GenotypeQuality
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bin: 3.25e1
variant carriers: 685

GenotypeQuality
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GenotypeQuality
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variant carriers: 27786

GenotypeQuality
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bin: 8.25e1
variant carriers: 517

GenotypeQuality
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variant carriers: 748

GenotypeQuality
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bin: 2.25e1
variant carriers: 424

GenotypeQuality
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bin: 3.75e1
variant carriers: 845

GenotypeQuality
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bin: 7.25e1
variant carriers: 381

GenotypeQuality
all individuals: 1575
bin: 6.75e1
variant carriers: 647

GenotypeQuality
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variant carriers: 595

GenotypeQuality
all individuals: 533
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variant carriers: 446

GenotypeQuality
all individuals: 595
bin: 4.25e1
variant carriers: 489

GenotypeQuality
all individuals: 966
bin: 5.25e1
variant carriers: 848

GenotypeQuality
all individuals: 620
bin: 5.75e1
variant carriers: 508

South Asian
type: Population
allele count: 5446
allele frequency: 3.958999709217796e-1
allele num: 13756
num of homozygotes: 1029

European (Finnish)
type: Population
allele count: 2467
allele frequency: 4.381882770870337e-1
allele num: 5630
num of homozygotes: 487

Other
type: Population
allele count: 323
allele frequency: 4.436813186813187e-1
allele num: 728
num of homozygotes: 62

Latino
type: Population
allele count: 3746
allele frequency: 4.353788935378893e-1
allele num: 8604
num of homozygotes: 659

African
type: Population
allele count: 3642
allele frequency: 4.173733669493468e-1
allele num: 8726
num of homozygotes: 668

European (Non-Finnish)
type: Population
allele count: 22991
allele frequency: 4.237659896044531e-1
allele num: 54254
num of homozygotes: 4162

East Asian
type: Population
allele count: 4577
allele frequency: 6.118983957219252e-1
allele num: 7480
num of homozygotes: 1359

DP
type: SiteQuality
SIO_000300: 1.748646e6

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

QD
type: SiteQuality
SIO_000300: 1.991e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

GenotypeQuality
all individuals: 11407
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variant carriers: 0

GenotypeQuality
all individuals: 612
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GenotypeQuality
all individuals: 1246
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 519
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GenotypeQuality
all individuals: 102
bin: 5.75e1
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GenotypeQuality
all individuals: 1279
bin: 3.25e1
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GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.613264427217915e-5
allele num: 11610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
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African
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Other
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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SIO_000300: 6.94e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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South Asian
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Other
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African
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ClippingRankSum
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MQRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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allele num: 5098
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Latino
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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MQRankSum
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 29996
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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Latino
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Other
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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FS
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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Latino
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European (Non-Finnish)
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allele num: 11734
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South Asian
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East Asian
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Other
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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Other
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ClippingRankSum
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FS
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele num: 9464
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MQ
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VQSLOD
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.706484641638225e-3
allele num: 586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9368
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.605e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

QD
type: SiteQuality
SIO_000300: 2.358e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.340000000000001e-2

DP
type: SiteQuality
SIO_000300: 4.58489e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

GenotypeQuality
all individuals: 372
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 374
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.096731739416539e-4
allele num: 9118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.812913065582105e-4
allele num: 7868
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.985e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-2

FS
type: SiteQuality
SIO_000300: 2.326e0

MQRankSum
type: SiteQuality
SIO_000300: -5.52e-1

QD
type: SiteQuality
SIO_000300: 1.179e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.935e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.4874e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 20

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 255
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GenotypeQuality
all individuals: 183
bin: 4.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 2.421616110119806e-3
allele num: 7846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.10204081632653e-3
allele num: 196
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

DP
type: SiteQuality
SIO_000300: 4.28887e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.72e-2

QD
type: SiteQuality
SIO_000300: 1.152e1

VQSLOD
type: SiteQuality
SIO_000300: -1.821e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2473
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.152870647913304e-4
allele num: 8674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.770000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.779e0

QD
type: SiteQuality
SIO_000300: 1.368e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 3.007e0

DP
type: SiteQuality
SIO_000300: 4.21133e5

GenotypeQuality
all individuals: 346
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 254
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GenotypeQuality
all individuals: 354
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variant carriers: 1

South Asian
type: Population
allele count: 27
allele frequency: 3.450038333759264e-3
allele num: 7826
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 7.075471698113207e-4
allele num: 8480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.505e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

DP
type: SiteQuality
SIO_000300: 4.07422e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.98e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576590780097118e-5
allele num: 63428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.492995e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.307e-1

BaseQRankSum
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SIO_000300: -3.241e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.237e0

QD
type: SiteQuality
SIO_000300: 1.403e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.572920598968164e-5
allele num: 63576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.29e-1

QD
type: SiteQuality
SIO_000300: 8.31e0

FS
type: SiteQuality
SIO_000300: 4.122e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.501978e6

VQSLOD
type: SiteQuality
SIO_000300: -5.66e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.91e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56907048264608e-5
allele num: 63732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.75e1

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

DP
type: SiteQuality
SIO_000300: 1.536126e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6630
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15844
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.012965964343598e-4
allele num: 9872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64038
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.773e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.289e0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.584099e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

QD
type: SiteQuality
SIO_000300: 1.271e1

GenotypeQuality
all individuals: 1283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553229163430773e-5
allele num: 64382
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

FS
type: SiteQuality
SIO_000300: 4.718e0

QD
type: SiteQuality
SIO_000300: 1.424e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.772e0

DP
type: SiteQuality
SIO_000300: 1.619696e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2004
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539835545563734e-5
allele num: 64942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.052e0

FS
type: SiteQuality
SIO_000300: 2.271e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 8.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

DP
type: SiteQuality
SIO_000300: 1.65018e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.796e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.182e1

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 844
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.861273110807793e-4
allele num: 16118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.879470460383324e-5
allele num: 10122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 2.228e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.681892e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

QD
type: SiteQuality
SIO_000300: 1.323e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6653
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 843
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521282745611099e-5
allele num: 65734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.85112409275978e-5
allele num: 11298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.329e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.468e1

DP
type: SiteQuality
SIO_000300: 1.68821e6

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
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GenotypeQuality
all individuals: 1562
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1687
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5689
bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 193
bin: 5.25e1
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GenotypeQuality
all individuals: 769
bin: 9.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 544
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variant carriers: 0

GenotypeQuality
all individuals: 157
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GenotypeQuality
all individuals: 9884
bin: 9.75e1
variant carriers: 12

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65902
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.411100658513641e-3
allele num: 8504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.529e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.55e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.76326e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

VQSLOD
type: SiteQuality
SIO_000300: 6.35e0

GenotypeQuality
all individuals: 36632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 7.25e1
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GenotypeQuality
all individuals: 157
bin: 5.75e1
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 1687
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GenotypeQuality
all individuals: 174
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GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
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GenotypeQuality
all individuals: 544
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GenotypeQuality
all individuals: 769
bin: 9.25e1
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GenotypeQuality
all individuals: 193
bin: 5.25e1
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GenotypeQuality
all individuals: 9884
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517404631118934e-5
allele num: 65902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.529e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

DP
type: SiteQuality
SIO_000300: 1.76326e6

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

VQSLOD
type: SiteQuality
SIO_000300: 6.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.55e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 36632
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 157
bin: 5.75e1
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GenotypeQuality
all individuals: 1687
bin: 7.75e1
variant carriers: 13

GenotypeQuality
all individuals: 932
bin: 2.25e1
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GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 322
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 481
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 769
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1562
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 5689
bin: 6.75e1
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GenotypeQuality
all individuals: 1170
bin: 8.25e1
variant carriers: 18

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 3

African
type: Population
allele count: 577
allele frequency: 5.659081992938407e-2
allele num: 10196
num of homozygotes: 19

European (Non-Finnish)
type: Population
allele count: 468
allele frequency: 7.101453673636612e-3
allele num: 65902
num of homozygotes: 0

Latino
type: Population
allele count: 1636
allele frequency: 1.442426379827191e-1
allele num: 11342
num of homozygotes: 133

Other
type: Population
allele count: 21
allele frequency: 2.348993288590604e-2
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 121
allele frequency: 7.470980489009632e-3
allele num: 16196
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 40
allele frequency: 6.097560975609756e-3
allele num: 6560
num of homozygotes: 0

East Asian
type: Population
allele count: 1100
allele frequency: 1.293508936970837e-1
allele num: 8504
num of homozygotes: 62

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

DP
type: SiteQuality
SIO_000300: 1.76326e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.55e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

QD
type: SiteQuality
SIO_000300: 1.529e1

GenotypeQuality
all individuals: 1225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 386
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
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GenotypeQuality
all individuals: 6470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
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variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505570611261668e-5
allele num: 66420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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DP
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InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 5.87e0

QD
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SIO_000300: 1.746e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.064e0

QD
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SIO_000300: 7.97e0

DP
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.836e1

BaseQRankSum
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SIO_000300: 1.95e0

ReadPosRankSum
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SIO_000300: 1.4e0

FS
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QD
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InbreedingCoeff
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MQRankSum
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.37e-1

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503036132988637e-5
allele num: 66532
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.337e0

ReadPosRankSum
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SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.418e0

DP
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SIO_000300: 1.727633e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

VQSLOD
type: SiteQuality
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QD
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.507211538461539e-5
allele num: 66560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.507211538461539e-5
allele num: 66560
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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FS
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QD
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 3.868471953578336e-4
allele num: 10340
num of homozygotes: 0

Other
type: Population
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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FS
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MQRankSum
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MQ
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DP
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 1.21447656060238e-4
allele num: 16468
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VQSLOD
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SIO_000300: -1.45e-2

BaseQRankSum
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SIO_000300: 1.61e0

ReadPosRankSum
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SIO_000300: 1.58e0

MQRankSum
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FS
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DP
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.932367149758454e-4
allele num: 10350
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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VQSLOD
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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South Asian
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allele count: 7
allele frequency: 4.250151791135398e-4
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

FS
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VQSLOD
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ReadPosRankSum
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MQ
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SIO_000300: 5.976e1

DP
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QD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

InbreedingCoeff
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SIO_000300: 2.24e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 11
allele frequency: 9.532062391681109e-4
allele num: 11540
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 28
allele frequency: 2.712652586708002e-3
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.503895088278642e-5
allele num: 66494
num of homozygotes: 0

East Asian
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Latino
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South Asian
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Other
type: Population
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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East Asian
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Other
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European (Finnish)
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South Asian
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MQ
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.507204437209863e-5
allele num: 66348
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South Asian
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Other
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African
type: Population
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Latino
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East Asian
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MQ
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SIO_000300: 5.911e1

BaseQRankSum
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VQSLOD
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SIO_000300: -1.133e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.061e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.424e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.181e0

MQRankSum
type: SiteQuality
SIO_000300: -1.637e0

DP
type: SiteQuality
SIO_000300: 1.721912e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507477086348288e-5
allele num: 66336
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.748488984207447e-5
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.392e-1

DP
type: SiteQuality
SIO_000300: 1.720963e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

FS
type: SiteQuality
SIO_000300: 7.75e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 1.414e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66014
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.745845723281441e-5
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.03e-1

QD
type: SiteQuality
SIO_000300: 6.5e0

VQSLOD
type: SiteQuality
SIO_000300: -1.79e0

FS
type: SiteQuality
SIO_000300: 1.03e1

DP
type: SiteQuality
SIO_000300: 1.705561e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.952e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.28e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521699433927811e-5
allele num: 65716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.687672e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.804366966015144e-5
allele num: 11358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.678448e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.798e0

FS
type: SiteQuality
SIO_000300: 3.779e0

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

QD
type: SiteQuality
SIO_000300: 2.767e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.669e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.819897689186806e-5
allele num: 11338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.638719139574676e-5
allele num: 65456
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.645969306756042e-4
allele num: 11338
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.143260842855388e-5
allele num: 16278
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529706908156397e-5
allele num: 65372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11306
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6528
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Other
type: Population
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allele num: 892
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South Asian
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allele count: 5
allele frequency: 3.076544425301501e-4
allele num: 16252
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.654e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.81e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 31312
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535909565644775e-5
allele num: 65108
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

African
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allele count: 0
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allele num: 10044
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South Asian
type: Population
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Other
type: Population
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MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

BaseQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.86e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2985
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27822
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5933
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.173601679219657e-4
allele num: 16198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.086133999938278e-5
allele num: 64806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 54
allele frequency: 6.45933014354067e-3
allele num: 8360
num of homozygotes: 1

African
type: Population
allele count: 1
allele frequency: 9.984025559105431e-5
allele num: 10016
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.926977325477593e-5
allele num: 11202
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.445e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

DP
type: SiteQuality
SIO_000300: 1.601772e6

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6430
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2065
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27098
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5508
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544020010499336e-5
allele num: 64766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.561047948591201e-4
allele num: 16184
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.472e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

DP
type: SiteQuality
SIO_000300: 1.593708e6

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

GenotypeQuality
all individuals: 293
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3846
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3364
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4402
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6428
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 776
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5367
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.348998099037053e-5
allele num: 64178
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011122345803842e-4
allele num: 9890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.815e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 1.522051e6

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

GenotypeQuality
all individuals: 245
bin: 2.5e0
variant carriers: 7

GenotypeQuality
all individuals: 3462
bin: 2.75e1
variant carriers: 18

GenotypeQuality
all individuals: 375
bin: 1.75e1
variant carriers: 20

GenotypeQuality
all individuals: 3444
bin: 6.75e1
variant carriers: 68

GenotypeQuality
all individuals: 485
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 14992
bin: 9.75e1
variant carriers: 10638

GenotypeQuality
all individuals: 563
bin: 5.25e1
variant carriers: 72

GenotypeQuality
all individuals: 1083
bin: 7.25e1
variant carriers: 39

GenotypeQuality
all individuals: 909
bin: 8.25e1
variant carriers: 83

GenotypeQuality
all individuals: 518
bin: 5.75e1
variant carriers: 53

GenotypeQuality
all individuals: 5581
bin: 3.25e1
variant carriers: 26

GenotypeQuality
all individuals: 12095
bin: 6.25e1
variant carriers: 70

GenotypeQuality
all individuals: 1261
bin: 7.75e1
variant carriers: 80

GenotypeQuality
all individuals: 4123
bin: 3.75e1
variant carriers: 34

South Asian
type: Population
allele count: 2678
allele frequency: 1.675425425425426e-1
allele num: 15984
num of homozygotes: 251

Latino
type: Population
allele count: 826
allele frequency: 7.591911764705882e-2
allele num: 10880
num of homozygotes: 39

East Asian
type: Population
allele count: 1163
allele frequency: 1.46105527638191e-1
allele num: 7960
num of homozygotes: 71

African
type: Population
allele count: 1750
allele frequency: 1.792298238426874e-1
allele num: 9764
num of homozygotes: 123

European (Non-Finnish)
type: Population
allele count: 5159
allele frequency: 8.154201175949927e-2
allele num: 63268
num of homozygotes: 207

Other
type: Population
allele count: 104
allele frequency: 1.203703703703704e-1
allele num: 864
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 261
allele frequency: 4.094759962347035e-2
allele num: 6374
num of homozygotes: 7

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.548e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.938e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.492999e6

VQSLOD
type: SiteQuality
SIO_000300: 6.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.35e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

GenotypeQuality
all individuals: 944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7516
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2144
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7473
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5751
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 873
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6805
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4317
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.212128999100604e-4
allele num: 15566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.139952921035737e-4
allele num: 9346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

FS
type: SiteQuality
SIO_000300: 1.839e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.0e0

DP
type: SiteQuality
SIO_000300: 1.376602e6

MQ
type: SiteQuality
SIO_000300: 6.083e1

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

QD
type: SiteQuality
SIO_000300: 1.44e1

GenotypeQuality
all individuals: 1208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7568
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7460
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2349
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6788
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5728
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4284
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.451612903225807e-5
allele num: 15500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.374649e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.495e0

MQ
type: SiteQuality
SIO_000300: 5.2e1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

FS
type: SiteQuality
SIO_000300: 4.758e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 5.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1