15-72491979-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72491979
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72491979
    reference: chr 15
allele count: 1
allele frequency: 9.071611299599035e-6
allele num: 110234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.*12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1306G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.*12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.*12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.*12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2407G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1699G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

15-72491983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72491983
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72491983
    reference: chr 15
allele count: 9
allele frequency: 7.984952800056782e-5
allele num: 112712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.*8C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.*8C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.*8C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1302C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2403C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1695C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.*8C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35068
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-72491988-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72491988
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72491988
    reference: chr 15
allele count: 2
allele frequency: 1.749505764621494e-5
allele num: 114318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2398G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1690G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1297G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.*3G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.*3G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.*3G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.*3G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

15-72491991-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72491991
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72491991
    reference: chr 15
allele count: 1
allele frequency: 8.692477529945585e-6
allele num: 115042
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1596A>G
  hgvsp: ENSP00000320171.6:p.Ter532TrpextTer26
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2395A>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1596A>G
  hgvsp: ENSP00000373745.3:p.Ter532TrpextTer26
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1596A>G
  hgvsp: ENSP00000334983.5:p.Ter532TrpextTer26
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1687A>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1596A>G
  hgvsp: ENSP00000456970.1:p.Ter532TrpextTer?
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1596A>G
  hgvsp: ENSP00000455736.1:p.Ter532TrpextTer26
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1596A>G
  hgvsp: ENSP00000455901.1:p.Ter532TrpextTer?
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1101A>G
  hgvsp: ENSP00000456100.1:p.Ter367TrpextTer26
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1551A>G
  hgvsp: ENSP00000403365.2:p.Ter517TrpextTer26
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1294A>G
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter532TrpextTer26
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-72491993-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72491993
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72491993
    reference: chr 15
allele count: 1
allele frequency: 8.666112035496396e-6
allele num: 115392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1099T>C
  hgvsp: ENSP00000456100.1:p.Ter367ArgextTer26
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1594T>C
  hgvsp: ENSP00000373745.3:p.Ter532ArgextTer26
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1594T>C
  hgvsp: ENSP00000334983.5:p.Ter532ArgextTer26
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2393T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1549T>C
  hgvsp: ENSP00000403365.2:p.Ter517ArgextTer26
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1292T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1594T>C
  hgvsp: ENSP00000456970.1:p.Ter532ArgextTer?
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1594T>C
  hgvsp: ENSP00000455901.1:p.Ter532ArgextTer?
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1594T>C
  hgvsp: ENSP00000320171.6:p.Ter532ArgextTer26
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1685T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1594T>C
  hgvsp: ENSP00000455736.1:p.Ter532ArgextTer26
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter532ArgextTer26
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

15-72491995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72491995
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72491995
    reference: chr 15
allele count: 7
allele frequency: 6.043026347594876e-5
allele num: 115836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1547C>T
  hgvsp: ENSP00000403365.2:p.Pro516Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1592C>T
  hgvsp: ENSP00000334983.5:p.Pro531Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1592C>T
  hgvsp: ENSP00000455736.1:p.Pro531Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1592C>T
  hgvsp: ENSP00000455901.1:p.Pro531Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1592C>T
  hgvsp: ENSP00000456970.1:p.Pro531Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1592C>T
  hgvsp: ENSP00000320171.6:p.Pro531Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1097C>T
  hgvsp: ENSP00000456100.1:p.Pro366Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2391C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1592C>T
  hgvsp: ENSP00000373745.3:p.Pro531Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1290C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1683C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro531Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

15-72492000-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492000
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72491999
    reference: chr 15
allele count: 1
allele frequency: 8.571477551300294e-6
allele num: 116666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1677delC
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2385delC
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1541delC
  hgvsp: ENSP00000403365.2:p.Pro514LeufsTer24
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1091delC
  hgvsp: ENSP00000456100.1:p.Pro364LeufsTer24
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1586delC
  hgvsp: ENSP00000456970.1:p.Pro529LeufsTer?
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1586delC
  hgvsp: ENSP00000455901.1:p.Pro529LeufsTer?
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1284delC
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1586delC
  hgvsp: ENSP00000320171.6:p.Pro529LeufsTer24
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1586delC
  hgvsp: ENSP00000373745.3:p.Pro529LeufsTer24
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1586delC
  hgvsp: ENSP00000334983.5:p.Pro529LeufsTer24
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1586delC
  hgvsp: ENSP00000455736.1:p.Pro529LeufsTer24
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro529LeufsTer24
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: AG
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

15-72492010-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492010
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492010
    reference: chr 15
allele count: 7
allele frequency: 5.959272628209494e-5
allele num: 117464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1082G>A
  hgvsp: ENSP00000456100.1:p.Arg361His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1577G>A
  hgvsp: ENSP00000334983.5:p.Arg526His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1577G>A
  hgvsp: ENSP00000455736.1:p.Arg526His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1577G>A
  hgvsp: ENSP00000320171.6:p.Arg526His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1668G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1577G>A
  hgvsp: ENSP00000456970.1:p.Arg526His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1577G>A
  hgvsp: ENSP00000373745.3:p.Arg526His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1275G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1532G>A
  hgvsp: ENSP00000403365.2:p.Arg511His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1577G>A
  hgvsp: ENSP00000455901.1:p.Arg526His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2376G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg526His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

15-72492014-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492014
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492014
    reference: chr 15
allele count: 1
allele frequency: 8.491847826086957e-6
allele num: 117760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1664A>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1573A>G
  hgvsp: ENSP00000320171.6:p.Met525Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1573A>G
  hgvsp: ENSP00000334983.5:p.Met525Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1528A>G
  hgvsp: ENSP00000403365.2:p.Met510Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1573A>G
  hgvsp: ENSP00000456970.1:p.Met525Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1078A>G
  hgvsp: ENSP00000456100.1:p.Met360Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1271A>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2372A>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1573A>G
  hgvsp: ENSP00000373745.3:p.Met525Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1573A>G
  hgvsp: ENSP00000455901.1:p.Met525Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1573A>G
  hgvsp: ENSP00000455736.1:p.Met525Val
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Met525Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

15-72492015-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492015
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492015
    reference: chr 15
allele count: 3
allele frequency: 2.545090520386175e-5
allele num: 117874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1572C>T
  hgvsp: ENST00000565184.1:c.1572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1572C>T
  hgvsp: ENST00000389093.3:c.1572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1572C>T
  hgvsp: ENST00000568459.1:c.1572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1572C>T
  hgvsp: ENST00000319622.6:c.1572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1270C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2371C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1527C>T
  hgvsp: ENST00000449901.2:c.1527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1572C>T
  hgvsp: ENST00000565154.1:c.1572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1663C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1572C>T
  hgvsp: ENST00000335181.5:c.1572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1077C>T
  hgvsp: ENST00000568883.1:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr524Thr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

15-72492030-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492030
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492030
    reference: chr 15
allele count: 1
allele frequency: 8.452228007302725e-6
allele num: 118312
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1557C>T
  hgvsp: ENST00000319622.6:c.1557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1255C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1557C>T
  hgvsp: ENST00000389093.3:c.1557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1557C>T
  hgvsp: ENST00000335181.5:c.1557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1512C>T
  hgvsp: ENST00000449901.2:c.1512C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1557C>T
  hgvsp: ENST00000565154.1:c.1557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1557C>T
  hgvsp: ENST00000568459.1:c.1557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1062C>T
  hgvsp: ENST00000568883.1:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2356C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1557C>T
  hgvsp: ENST00000565184.1:c.1557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1648C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17344
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser519Ser
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

15-72492040-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492040
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492040
    reference: chr 15
allele count: 1
allele frequency: 8.449942540390725e-6
allele num: 118344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1547G>A
  hgvsp: ENSP00000373745.3:p.Arg516His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1547G>A
  hgvsp: ENSP00000455736.1:p.Arg516His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1638G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1547G>A
  hgvsp: ENSP00000456970.1:p.Arg516His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2346G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1547G>A
  hgvsp: ENSP00000455901.1:p.Arg516His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1547G>A
  hgvsp: ENSP00000334983.5:p.Arg516His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1547G>A
  hgvsp: ENSP00000320171.6:p.Arg516His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1245G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1052G>A
  hgvsp: ENSP00000456100.1:p.Arg351His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1502G>A
  hgvsp: ENSP00000403365.2:p.Arg501His
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg516His
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum

15-72492041-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492041
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492041
    reference: chr 15
allele count: 1
allele frequency: 8.452085129401424e-6
allele num: 118314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1546C>T
  hgvsp: ENSP00000334983.5:p.Arg516Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1546C>T
  hgvsp: ENSP00000456970.1:p.Arg516Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2345C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1637C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1244C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1051C>T
  hgvsp: ENSP00000456100.1:p.Arg351Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1546C>T
  hgvsp: ENSP00000373745.3:p.Arg516Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1546C>T
  hgvsp: ENSP00000455736.1:p.Arg516Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1546C>T
  hgvsp: ENSP00000455901.1:p.Arg516Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1546C>T
  hgvsp: ENSP00000320171.6:p.Arg516Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1501C>T
  hgvsp: ENSP00000403365.2:p.Arg501Cys
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg516Cys
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

15-72492045-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492045
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492045
    reference: chr 15
allele count: 2
allele frequency: 1.68967439974317e-5
allele num: 118366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1633A>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1542A>T
  hgvsp: ENST00000335181.5:c.1542A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1497A>T
  hgvsp: ENST00000449901.2:c.1497A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1542A>T
  hgvsp: ENST00000565184.1:c.1542A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1240A>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2341A>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1542A>T
  hgvsp: ENST00000568459.1:c.1542A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1047A>T
  hgvsp: ENST00000568883.1:c.1047A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1542A>T
  hgvsp: ENST00000319622.6:c.1542A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1542A>T
  hgvsp: ENST00000565154.1:c.1542A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1542A>T
  hgvsp: ENST00000389093.3:c.1542A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly514Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

15-72492048-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492048
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492048
    reference: chr 15
allele count: 8
allele frequency: 6.765327695560253e-5
allele num: 118250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1539C>T
  hgvsp: ENST00000568459.1:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1539C>T
  hgvsp: ENST00000565184.1:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1044C>T
  hgvsp: ENST00000568883.1:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1539C>T
  hgvsp: ENST00000335181.5:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2338C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1539C>T
  hgvsp: ENST00000319622.6:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1494C>T
  hgvsp: ENST00000449901.2:c.1494C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1539C>T
  hgvsp: ENST00000389093.3:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1539C>T
  hgvsp: ENST00000565154.1:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1237C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1630C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr513Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-72492057-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492057
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492057
    reference: chr 15
allele count: 1
allele frequency: 8.491270973439305e-6
allele num: 117768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1530T>C
  hgvsp: ENST00000565154.1:c.1530T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1530T>C
  hgvsp: ENST00000335181.5:c.1530T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1621T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1530T>C
  hgvsp: ENST00000389093.3:c.1530T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1530T>C
  hgvsp: ENST00000565184.1:c.1530T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1228T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1035T>C
  hgvsp: ENST00000568883.1:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1530T>C
  hgvsp: ENST00000568459.1:c.1530T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1530T>C
  hgvsp: ENST00000319622.6:c.1530T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2329T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1485T>C
  hgvsp: ENST00000449901.2:c.1485T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile510Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

15-72492059-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492059
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492059
    reference: chr 15
allele count: 1
allele frequency: 8.511072905850511e-6
allele num: 117494
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2327A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1033A>C
  hgvsp: ENSP00000456100.1:p.Ile345Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1619A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1528A>C
  hgvsp: ENSP00000455901.1:p.Ile510Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1528A>C
  hgvsp: ENSP00000373745.3:p.Ile510Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1528A>C
  hgvsp: ENSP00000320171.6:p.Ile510Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1528A>C
  hgvsp: ENSP00000455736.1:p.Ile510Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1483A>C
  hgvsp: ENSP00000403365.2:p.Ile495Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1226A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1528A>C
  hgvsp: ENSP00000334983.5:p.Ile510Leu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1528A>C
  hgvsp: ENSP00000456970.1:p.Ile510Leu
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17500
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile510Leu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

15-72492075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492075
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492075
    reference: chr 15
allele count: 1
allele frequency: 8.72783130847647e-6
allele num: 114576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1467G>A
  hgvsp: ENST00000449901.2:c.1467G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1512G>A
  hgvsp: ENST00000319622.6:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1512G>A
  hgvsp: ENST00000565154.1:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1512G>A
  hgvsp: ENST00000389093.3:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2311G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1512G>A
  hgvsp: ENST00000335181.5:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1210G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1512G>A
  hgvsp: ENST00000565184.1:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1603G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1017G>A
  hgvsp: ENST00000568883.1:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1512G>A
  hgvsp: ENST00000568459.1:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys504Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

15-72492076-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492076
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492076
    reference: chr 15
allele count: 5
allele frequency: 4.363839480528548e-5
allele num: 114578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1511A>G
  hgvsp: ENSP00000373745.3:p.Lys504Arg
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1511A>G
  hgvsp: ENSP00000334983.5:p.Lys504Arg
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2310A>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1511A>G
  hgvsp: ENSP00000455736.1:p.Lys504Arg
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1511A>G
  hgvsp: ENSP00000320171.6:p.Lys504Arg
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1016A>G
  hgvsp: ENSP00000456100.1:p.Lys339Arg
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1511A>G
  hgvsp: ENSP00000456970.1:p.Lys504Arg
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1602A>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1466A>G
  hgvsp: ENSP00000403365.2:p.Lys489Arg
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1209A>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1511A>G
  hgvsp: ENSP00000455901.1:p.Lys504Arg
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32508
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys504Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

15-72492081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492081
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492081
    reference: chr 15
allele count: 1
allele frequency: 8.941824489868913e-6
allele num: 111834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1506C>T
  hgvsp: ENST00000389093.3:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1506C>T
  hgvsp: ENST00000568459.1:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1506C>T
  hgvsp: ENST00000335181.5:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1011C>T
  hgvsp: ENST00000568883.1:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2305C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1204C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1461C>T
  hgvsp: ENST00000449901.2:c.1461C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1506C>T
  hgvsp: ENST00000319622.6:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1597C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1506C>T
  hgvsp: ENST00000565154.1:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1506C>T
  hgvsp: ENST00000565184.1:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe502Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

15-72492085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492085
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492085
    reference: chr 15
allele count: 1
allele frequency: 9.041754823776199e-6
allele num: 110598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1593G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1007G>A
  hgvsp: ENSP00000456100.1:p.Gly336Asp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1502G>A
  hgvsp: ENSP00000455901.1:p.Gly501Asp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1502G>A
  hgvsp: ENSP00000320171.6:p.Gly501Asp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1502G>A
  hgvsp: ENSP00000455736.1:p.Gly501Asp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1502G>A
  hgvsp: ENSP00000334983.5:p.Gly501Asp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1200G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2301G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1502G>A
  hgvsp: ENSP00000373745.3:p.Gly501Asp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1457G>A
  hgvsp: ENSP00000403365.2:p.Gly486Asp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1502G>A
  hgvsp: ENSP00000456970.1:p.Gly501Asp
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly501Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

15-72492088-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492088
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492088
    reference: chr 15
allele count: 1
allele frequency: 9.254974548819991e-6
allele num: 108050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1499G>A
  hgvsp: ENSP00000455736.1:p.Arg500Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.1004G>A
  hgvsp: ENSP00000456100.1:p.Arg335Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1197G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1499G>A
  hgvsp: ENSP00000320171.6:p.Arg500Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1499G>A
  hgvsp: ENSP00000456970.1:p.Arg500Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1454G>A
  hgvsp: ENSP00000403365.2:p.Arg485Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1499G>A
  hgvsp: ENSP00000455901.1:p.Arg500Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1590G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1499G>A
  hgvsp: ENSP00000334983.5:p.Arg500Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1499G>A
  hgvsp: ENSP00000373745.3:p.Arg500Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2298G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg500Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

15-72492096-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492096
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492096
    reference: chr 15
allele count: 9
allele frequency: 8.823356404776377e-5
allele num: 102002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1582C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1189C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1491C>T
  hgvsp: ENST00000568459.1:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1491C>T
  hgvsp: ENST00000565154.1:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1491C>T
  hgvsp: ENST00000319622.6:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1491C>T
  hgvsp: ENST00000389093.3:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1446C>T
  hgvsp: ENST00000449901.2:c.1446C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1491C>T
  hgvsp: ENST00000335181.5:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.996C>T
  hgvsp: ENST00000568883.1:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2290C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1491C>T
  hgvsp: ENST00000565184.1:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22525
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11681
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1491C>T
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

15-72492100-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492100
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492100
    reference: chr 15
allele count: 1
allele frequency: 1.013294422827497e-5
allele num: 98688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1490-3C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1490-3C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1490-3C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1581-3C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1188-3C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.995-3C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2289-3C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1490-3C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1490-3C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1445-3C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1490-3C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1490-3C>T
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

15-72492104-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492104
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492104
    reference: chr 15
allele count: 1
allele frequency: 1.057932376962465e-5
allele num: 94524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1188-7C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1490-7C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1490-7C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2289-7C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1490-7C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1581-7C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1490-7C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1490-7C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.995-7C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1445-7C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1490-7C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1490-7C>T
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

15-72492107-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492107
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492107
    reference: chr 15
allele count: 1
allele frequency: 1.072179096796329e-5
allele num: 93268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2289-10C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1581-10C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1188-10C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1445-10C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1490-10C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.995-10C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1490-10C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1490-10C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1490-10C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1490-10C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1490-10C>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

15-72492108-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492108
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492108
    reference: chr 15
allele count: 1
allele frequency: 1.071834337284829e-5
allele num: 93298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1490-11T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1490-11T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1490-11T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.995-11T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1188-11T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2289-11T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1490-11T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1490-11T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1581-11T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1445-11T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1490-11T>C
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15457
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

15-72492128-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492128
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492128
    reference: chr 15
allele count: 1
allele frequency: 1.221866523300995e-5
allele num: 81842
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1490-31T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1445-31T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2289-31T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.995-31T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1490-31T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1188-31T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1581-31T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1490-31T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1490-31T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1490-31T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1490-31T>C
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23377
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

15-72492131-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492131
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492131
    reference: chr 15
allele count: 1
allele frequency: 1.288161793121216e-5
allele num: 77630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1445-34C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1490-34C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1490-34C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1188-34C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1581-34C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1490-34C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1490-34C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1490-34C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2289-34C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1490-34C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.995-34C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

15-72492135-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492135
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492135
    reference: chr 15
allele count: 15
allele frequency: 1.971194280908326e-4
allele num: 76096
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1490-38T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1490-38T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1490-38T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2289-38T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1188-38T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.995-38T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1445-38T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1490-38T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1490-38T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1490-38T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1581-38T>C
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21423
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17850
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.75e1
  variant carriers: 14
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-72492137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492137
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492137
    reference: chr 15
allele count: 6
allele frequency: 8.05693567879683e-5
allele num: 74470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1490-40G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.995-40G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1188-40G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1581-40G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1490-40G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1445-40G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1490-40G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1490-40G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1490-40G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2289-40G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1490-40G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18459
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20892
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6908
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/15-72492142-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492142
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492142
    reference: chr 15
allele count: 1
allele frequency: 1.437649156099945e-5
allele num: 69558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1581-45G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1188-45G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1490-45G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1445-45G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1490-45G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1490-45G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1490-45G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2289-45G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1490-45G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1490-45G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.995-45G>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19064
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

15-72492772-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492772
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492772
    reference: chr 15
allele count: 1
allele frequency: 8.34752412434472e-6
allele num: 119796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+43G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+43G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+43G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+43G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+43G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+43G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+43G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+43G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+43G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+43G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+43G>C
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8861
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/15-72492776-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492776
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492776
    reference: chr 15
allele count: 1
allele frequency: 8.338614455822021e-6
allele num: 119924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+39T>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+39T>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+39T>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+39T>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+39T>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+39T>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+39T>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+39T>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+39T>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+39T>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+39T>G
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15634
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/15-72492779-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492779
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492779
    reference: chr 15
allele count: 81574
allele frequency: 6.796021061050387e-1
allele num: 120032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+36G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+36G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+36G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+36G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+36G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+36G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+36G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+36G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+36G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+36G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+36G>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 1.25e1
  variant carriers: 1228
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 3.25e1
  variant carriers: 8953
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 3.75e1
  variant carriers: 7093
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 1.75e1
  variant carriers: 3294
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 4.25e1
  variant carriers: 4998
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 364
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8151
  bin: 2.25e1
  variant carriers: 6516
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 5.25e1
  variant carriers: 1866
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 4.75e1
  variant carriers: 3164
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 9.75e1
  variant carriers: 4456
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 5.75e1
  variant carriers: 1150
genotype depth: GenotypeDepth
  all individuals: 11240
  bin: 2.75e1
  variant carriers: 8924
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 658
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 8.25e1
  variant carriers: 1887
num of homozygotes: 28236
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

15-72492781-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492781
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492781
    reference: chr 15
allele count: 1
allele frequency: 8.285965232089886e-6
allele num: 120686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+34G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+34G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+34G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+34G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+34G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+34G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+34G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+34G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+34G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+34G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+34G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13091
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/15-72492791-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492791
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492791
    reference: chr 15
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+24G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+24G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+24G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+24G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+24G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+24G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+24G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+24G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+24G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+24G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+24G>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13199
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9333
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-72492791-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492791
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492791
    reference: chr 15
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+24G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+24G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+24G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+24G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+24G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+24G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+24G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+24G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+24G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+24G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+24G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-72492794-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492794
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492794
    reference: chr 15
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+21C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+21C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+21C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+21C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+21C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+21C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+21C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+21C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+21C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+21C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+21C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

15-72492795-C-CCCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492795
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492799
    reference: chr 15
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: CCCCT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+16_994+19dupAGGG
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+16_1489+19dupAGGG
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+16_1580+19dupAGGG
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+16_*1187+19dupAGGG
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+16_1489+19dupAGGG
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+16_1444+19dupAGGG
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+16_1489+19dupAGGG
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+16_1489+19dupAGGG
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+16_2288+19dupAGGG
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+16_1489+19dupAGGG
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+16_1489+19dupAGGG
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21408
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

15-72492799-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492799
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492799
    reference: chr 15
allele count: 2
allele frequency: 1.655546909921693e-5
allele num: 120806
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+16A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+16A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+16A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+16A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+16A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+16A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+16A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+16A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+16A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+16A>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+16A>C
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

15-72492800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492800
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492800
    reference: chr 15
allele count: 2
allele frequency: 1.655437283758505e-5
allele num: 120814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+15C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+15C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+15C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+15C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+15C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+15C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+15C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+15C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+15C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+15C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+15C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

15-72492803-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492803
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492803
    reference: chr 15
allele count: 2
allele frequency: 1.655190677966102e-5
allele num: 120832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+12G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+12G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21869
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4104
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

15-72492811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492811
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492811
    reference: chr 15
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.994+4C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1489+4C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1489+4C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1444+4C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1489+4C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1580+4C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2288+4C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1489+4C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1187+4C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1489+4C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1489+4C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.1489+4C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

15-72492820-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492820
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492820
    reference: chr 15
allele count: 2
allele frequency: 1.653575857792476e-5
allele num: 120950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1484A>T
  hgvsp: ENSP00000373745.3:p.Asn495Ile
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1484A>T
  hgvsp: ENSP00000455736.1:p.Asn495Ile
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1484A>T
  hgvsp: ENSP00000334983.5:p.Asn495Ile
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2283A>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1182A>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1484A>T
  hgvsp: ENSP00000456970.1:p.Asn495Ile
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1484A>T
  hgvsp: ENSP00000455901.1:p.Asn495Ile
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1439A>T
  hgvsp: ENSP00000403365.2:p.Asn480Ile
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.989A>T
  hgvsp: ENSP00000456100.1:p.Asn330Ile
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1484A>T
  hgvsp: ENSP00000320171.6:p.Asn495Ile
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1575A>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13471
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn495Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

15-72492827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492827
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492827
    reference: chr 15
allele count: 1
allele frequency: 8.264326209484141e-6
allele num: 121002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1477G>A
  hgvsp: ENSP00000334983.5:p.Ala493Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1432G>A
  hgvsp: ENSP00000403365.2:p.Ala478Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.982G>A
  hgvsp: ENSP00000456100.1:p.Ala328Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1477G>A
  hgvsp: ENSP00000373745.3:p.Ala493Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1477G>A
  hgvsp: ENSP00000456970.1:p.Ala493Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1568G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1477G>A
  hgvsp: ENSP00000455736.1:p.Ala493Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1477G>A
  hgvsp: ENSP00000455901.1:p.Ala493Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1477G>A
  hgvsp: ENSP00000320171.6:p.Ala493Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1175G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2276G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala493Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

15-72492831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492831
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492831
    reference: chr 15
allele count: 4
allele frequency: 3.305129561078794e-5
allele num: 121024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1473C>T
  hgvsp: ENST00000568459.1:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.978C>T
  hgvsp: ENST00000568883.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1473C>T
  hgvsp: ENST00000319622.6:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1171C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1564C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2272C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1473C>T
  hgvsp: ENST00000565184.1:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1473C>T
  hgvsp: ENST00000335181.5:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1473C>T
  hgvsp: ENST00000389093.3:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1473C>T
  hgvsp: ENST00000565154.1:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1428C>T
  hgvsp: ENST00000449901.2:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22507
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn491Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

15-72492839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492839
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492839
    reference: chr 15
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1465C>T
  hgvsp: ENSP00000373745.3:p.Arg489Trp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1556C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1465C>T
  hgvsp: ENSP00000455736.1:p.Arg489Trp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1420C>T
  hgvsp: ENSP00000403365.2:p.Arg474Trp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1465C>T
  hgvsp: ENSP00000334983.5:p.Arg489Trp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2264C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1465C>T
  hgvsp: ENSP00000320171.6:p.Arg489Trp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1465C>T
  hgvsp: ENSP00000455901.1:p.Arg489Trp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1465C>T
  hgvsp: ENSP00000456970.1:p.Arg489Trp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.970C>T
  hgvsp: ENSP00000456100.1:p.Arg324Trp
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1163C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg489Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

15-72492842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492842
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492842
    reference: chr 15
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2261C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1553C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1160C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.967C>T
  hgvsp: ENSP00000456100.1:p.Leu323Phe
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1462C>T
  hgvsp: ENSP00000455901.1:p.Leu488Phe
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1462C>T
  hgvsp: ENSP00000334983.5:p.Leu488Phe
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1462C>T
  hgvsp: ENSP00000320171.6:p.Leu488Phe
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1462C>T
  hgvsp: ENSP00000456970.1:p.Leu488Phe
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1417C>T
  hgvsp: ENSP00000403365.2:p.Leu473Phe
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1462C>T
  hgvsp: ENSP00000455736.1:p.Leu488Phe
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1462C>T
  hgvsp: ENSP00000373745.3:p.Leu488Phe
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu488Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-72492847-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492847
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492847
    reference: chr 15
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1457T>C
  hgvsp: ENSP00000455901.1:p.Val486Ala
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1155T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1548T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2256T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1412T>C
  hgvsp: ENSP00000403365.2:p.Val471Ala
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1457T>C
  hgvsp: ENSP00000456970.1:p.Val486Ala
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1457T>C
  hgvsp: ENSP00000320171.6:p.Val486Ala
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1457T>C
  hgvsp: ENSP00000334983.5:p.Val486Ala
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.962T>C
  hgvsp: ENSP00000456100.1:p.Val321Ala
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1457T>C
  hgvsp: ENSP00000373745.3:p.Val486Ala
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1457T>C
  hgvsp: ENSP00000455736.1:p.Val486Ala
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val486Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

15-72492848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492848
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492848
    reference: chr 15
allele count: 2
allele frequency: 1.652428243303535e-5
allele num: 121034
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1456G>A
  hgvsp: ENSP00000320171.6:p.Val486Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1456G>A
  hgvsp: ENSP00000373745.3:p.Val486Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1456G>A
  hgvsp: ENSP00000456970.1:p.Val486Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1456G>A
  hgvsp: ENSP00000455736.1:p.Val486Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1154G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1456G>A
  hgvsp: ENSP00000455901.1:p.Val486Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.961G>A
  hgvsp: ENSP00000456100.1:p.Val321Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1411G>A
  hgvsp: ENSP00000403365.2:p.Val471Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2255G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1547G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1456G>A
  hgvsp: ENSP00000334983.5:p.Val486Met
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val486Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

15-72492849-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492849
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492849
    reference: chr 15
allele count: 2
allele frequency: 1.652346331791144e-5
allele num: 121040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1153C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1455C>T
  hgvsp: ENST00000561609.1:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1455C>T
  hgvsp: ENST00000565154.1:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1455C>T
  hgvsp: ENST00000389093.3:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.960C>T
  hgvsp: ENST00000568883.1:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1455C>T
  hgvsp: ENST00000319622.6:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1455C>T
  hgvsp: ENST00000565184.1:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1455C>T
  hgvsp: ENST00000335181.5:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1455C>T
  hgvsp: ENST00000568459.1:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2254C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1410C>T
  hgvsp: ENST00000449901.2:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1546C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp485Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

15-72492855-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492855
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492855
    reference: chr 15
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1449T>C
  hgvsp: ENST00000561609.1:c.1449T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1540T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1449T>C
  hgvsp: ENST00000565184.1:c.1449T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.954T>C
  hgvsp: ENST00000568883.1:c.954T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1147T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1449T>C
  hgvsp: ENST00000568459.1:c.1449T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1449T>C
  hgvsp: ENST00000335181.5:c.1449T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1449T>C
  hgvsp: ENST00000389093.3:c.1449T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1449T>C
  hgvsp: ENST00000319622.6:c.1449T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1449T>C
  hgvsp: ENST00000565154.1:c.1449T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2248T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1404T>C
  hgvsp: ENST00000449901.2:c.1404T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala483Ala
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

15-72492861-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492861
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492861
    reference: chr 15
allele count: 6
allele frequency: 4.955974427171956e-5
allele num: 121066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1443C>T
  hgvsp: ENST00000565184.1:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1443C>T
  hgvsp: ENST00000319622.6:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2242C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1443C>T
  hgvsp: ENST00000568459.1:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1398C>T
  hgvsp: ENST00000449901.2:c.1398C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1443C>T
  hgvsp: ENST00000335181.5:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1443C>T
  hgvsp: ENST00000389093.3:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1443C>T
  hgvsp: ENST00000565154.1:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1534C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1443C>T
  hgvsp: ENST00000561609.1:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.948C>T
  hgvsp: ENST00000568883.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1141C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22692
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala481Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

15-72492863-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492863
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492863
    reference: chr 15
allele count: 1
allele frequency: 8.259957378619926e-6
allele num: 121066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1396G>A
  hgvsp: ENSP00000403365.2:p.Ala466Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1441G>A
  hgvsp: ENSP00000455736.1:p.Ala481Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1441G>A
  hgvsp: ENSP00000456970.1:p.Ala481Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1441G>A
  hgvsp: ENSP00000334983.5:p.Ala481Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1441G>A
  hgvsp: ENSP00000373745.3:p.Ala481Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1441G>A
  hgvsp: ENSP00000457253.1:p.Ala481Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1139G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1441G>A
  hgvsp: ENSP00000320171.6:p.Ala481Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1441G>A
  hgvsp: ENSP00000455901.1:p.Ala481Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.946G>A
  hgvsp: ENSP00000456100.1:p.Ala316Thr
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1532G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2240G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala481Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

15-72492881-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492881
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492881
    reference: chr 15
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1514A>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1423A>G
  hgvsp: ENSP00000455901.1:p.Lys475Glu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1423A>G
  hgvsp: ENSP00000334983.5:p.Lys475Glu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2222A>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1423A>G
  hgvsp: ENSP00000320171.6:p.Lys475Glu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1423A>G
  hgvsp: ENSP00000456970.1:p.Lys475Glu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1378A>G
  hgvsp: ENSP00000403365.2:p.Lys460Glu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1121A>G
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1423A>G
  hgvsp: ENSP00000455736.1:p.Lys475Glu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1423A>G
  hgvsp: ENSP00000373745.3:p.Lys475Glu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1423A>G
  hgvsp: ENSP00000457253.1:p.Lys475Glu
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.928A>G
  hgvsp: ENSP00000456100.1:p.Lys310Glu
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys475Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

15-72492905-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492905
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492905
    reference: chr 15
allele count: 1
allele frequency: 8.267742575567167e-6
allele num: 120952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1399C>T
  hgvsp: ENSP00000455901.1:p.Arg467Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1399C>T
  hgvsp: ENSP00000456970.1:p.Arg467Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1399C>T
  hgvsp: ENSP00000457253.1:p.Arg467Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1399C>T
  hgvsp: ENSP00000455736.1:p.Arg467Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1354C>T
  hgvsp: ENSP00000403365.2:p.Arg452Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.904C>T
  hgvsp: ENSP00000456100.1:p.Arg302Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1490C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1399C>T
  hgvsp: ENSP00000373745.3:p.Arg467Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1399C>T
  hgvsp: ENSP00000334983.5:p.Arg467Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2198C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1399C>T
  hgvsp: ENSP00000320171.6:p.Arg467Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1097C>T
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg467Cys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-72492911-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492911
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492911
    reference: chr 15
allele count: 3
allele frequency: 2.480732973902689e-5
allele num: 120932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1393C>A
  hgvsp: ENSP00000457253.1:p.Leu465Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1348C>A
  hgvsp: ENSP00000403365.2:p.Leu450Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.898C>A
  hgvsp: ENSP00000456100.1:p.Leu300Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1393C>A
  hgvsp: ENSP00000334983.5:p.Leu465Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1484C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1393C>A
  hgvsp: ENSP00000455736.1:p.Leu465Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2192C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1393C>A
  hgvsp: ENSP00000455901.1:p.Leu465Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1091C>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1393C>A
  hgvsp: ENSP00000373745.3:p.Leu465Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1393C>A
  hgvsp: ENSP00000320171.6:p.Leu465Met
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1393C>A
  hgvsp: ENSP00000456970.1:p.Leu465Met
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu465Met
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/15-72492917-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492917
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492917
    reference: chr 15
allele count: 1
allele frequency: 8.274309922552459e-6
allele num: 120856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1387G>T
  hgvsp: ENSP00000456970.1:p.Ala463Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1342G>T
  hgvsp: ENSP00000403365.2:p.Ala448Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1387G>T
  hgvsp: ENSP00000320171.6:p.Ala463Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2186G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.892G>T
  hgvsp: ENSP00000456100.1:p.Ala298Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1387G>T
  hgvsp: ENSP00000373745.3:p.Ala463Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1478G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1387G>T
  hgvsp: ENSP00000457253.1:p.Ala463Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1085G>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1387G>T
  hgvsp: ENSP00000334983.5:p.Ala463Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1387G>T
  hgvsp: ENSP00000455736.1:p.Ala463Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1387G>T
  hgvsp: ENSP00000455901.1:p.Ala463Ser
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala463Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

15-72492922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492922
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492922
    reference: chr 15
allele count: 3
allele frequency: 2.483197033407277e-5
allele num: 120812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1382G>A
  hgvsp: ENSP00000456970.1:p.Arg461His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1382G>A
  hgvsp: ENSP00000455901.1:p.Arg461His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2181G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1382G>A
  hgvsp: ENSP00000455736.1:p.Arg461His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1382G>A
  hgvsp: ENSP00000320171.6:p.Arg461His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1382G>A
  hgvsp: ENSP00000373745.3:p.Arg461His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1382G>A
  hgvsp: ENSP00000457253.1:p.Arg461His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1382G>A
  hgvsp: ENSP00000334983.5:p.Arg461His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.887G>A
  hgvsp: ENSP00000456100.1:p.Arg296His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1337G>A
  hgvsp: ENSP00000403365.2:p.Arg446His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1080G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1473G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg461His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

15-72492923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492923
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492923
    reference: chr 15
allele count: 3
allele frequency: 2.483361478096752e-5
allele num: 120804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1472C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2180C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1381C>T
  hgvsp: ENSP00000456970.1:p.Arg461Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1381C>T
  hgvsp: ENSP00000334983.5:p.Arg461Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1381C>T
  hgvsp: ENSP00000455901.1:p.Arg461Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1336C>T
  hgvsp: ENSP00000403365.2:p.Arg446Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1381C>T
  hgvsp: ENSP00000320171.6:p.Arg461Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1381C>T
  hgvsp: ENSP00000373745.3:p.Arg461Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1381C>T
  hgvsp: ENSP00000455736.1:p.Arg461Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1079C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1381C>T
  hgvsp: ENSP00000457253.1:p.Arg461Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.886C>T
  hgvsp: ENSP00000456100.1:p.Arg296Cys
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg461Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

15-72492940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492940
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492940
    reference: chr 15
allele count: 1
allele frequency: 8.296138976920141e-6
allele num: 120538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1364G>A
  hgvsp: ENSP00000455736.1:p.Arg455Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2163G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1364G>A
  hgvsp: ENSP00000334983.5:p.Arg455Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1364G>A
  hgvsp: ENSP00000455901.1:p.Arg455Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1364G>A
  hgvsp: ENSP00000457253.1:p.Arg455Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1364G>A
  hgvsp: ENSP00000456970.1:p.Arg455Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1364G>A
  hgvsp: ENSP00000373745.3:p.Arg455Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1062G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1364G>A
  hgvsp: ENSP00000320171.6:p.Arg455Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1319G>A
  hgvsp: ENSP00000403365.2:p.Arg440Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.869G>A
  hgvsp: ENSP00000456100.1:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1455G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22544
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg455Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-72492956-TGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492956
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492954
    reference: chr 15
allele count: 1
allele frequency: 8.334166750008334e-6
allele num: 119988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1346_1347delCC
  hgvsp: ENSP00000334983.5:p.Pro449HisfsTer35
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.851_852delCC
  hgvsp: ENSP00000456100.1:p.Pro284HisfsTer35
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1301_1302delCC
  hgvsp: ENSP00000403365.2:p.Pro434HisfsTer35
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1346_1347delCC
  hgvsp: ENSP00000373745.3:p.Pro449HisfsTer35
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2145_2146delCC
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1346_1347delCC
  hgvsp: ENSP00000455901.1:p.Pro449HisfsTer35
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1346_1347delCC
  hgvsp: ENSP00000457253.1:p.Pro449HisfsTer35
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1346_1347delCC
  hgvsp: ENSP00000320171.6:p.Pro449HisfsTer35
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1346_1347delCC
  hgvsp: ENSP00000455736.1:p.Pro449HisfsTer35
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1346_1347delCC
  hgvsp: ENSP00000456970.1:p.Pro449HisfsTer35
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1437_1438delCC
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1044_*1045delCC
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro449HisfsTer35
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: TGG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

15-72492970-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492970
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492970
    reference: chr 15
allele count: 1
allele frequency: 8.371283150281276e-6
allele num: 119456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.839G>A
  hgvsp: ENSP00000456100.1:p.Arg280His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1425G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1334G>A
  hgvsp: ENSP00000457253.1:p.Arg445His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1334G>A
  hgvsp: ENSP00000334983.5:p.Arg445His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1334G>A
  hgvsp: ENSP00000373745.3:p.Arg445His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1334G>A
  hgvsp: ENSP00000455901.1:p.Arg445His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1334G>A
  hgvsp: ENSP00000456970.1:p.Arg445His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1032G>A
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1289G>A
  hgvsp: ENSP00000403365.2:p.Arg430His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1334G>A
  hgvsp: ENSP00000320171.6:p.Arg445His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1334G>A
  hgvsp: ENSP00000455736.1:p.Arg445His
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2133G>A
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg445His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

15-72492971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492971
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492971
    reference: chr 15
allele count: 1
allele frequency: 8.371983992766606e-6
allele num: 119446
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1333C>T
  hgvsp: ENSP00000320171.6:p.Arg445Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1031C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1333C>T
  hgvsp: ENSP00000455901.1:p.Arg445Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.838C>T
  hgvsp: ENSP00000456100.1:p.Arg280Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1333C>T
  hgvsp: ENSP00000334983.5:p.Arg445Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1424C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1333C>T
  hgvsp: ENSP00000373745.3:p.Arg445Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1333C>T
  hgvsp: ENSP00000457253.1:p.Arg445Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2132C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1333C>T
  hgvsp: ENSP00000455736.1:p.Arg445Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1333C>T
  hgvsp: ENSP00000456970.1:p.Arg445Cys
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1288C>T
  hgvsp: ENSP00000403365.2:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg445Cys
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

15-72492979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492979
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492979
    reference: chr 15
allele count: 1
allele frequency: 8.408166010829718e-6
allele num: 118932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1325C>T
  hgvsp: ENSP00000456970.1:p.Ala442Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1325C>T
  hgvsp: ENSP00000320171.6:p.Ala442Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1325C>T
  hgvsp: ENSP00000334983.5:p.Ala442Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1416C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2124C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1325C>T
  hgvsp: ENSP00000455901.1:p.Ala442Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1325C>T
  hgvsp: ENSP00000457253.1:p.Ala442Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1280C>T
  hgvsp: ENSP00000403365.2:p.Ala427Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.830C>T
  hgvsp: ENSP00000456100.1:p.Ala277Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1325C>T
  hgvsp: ENSP00000455736.1:p.Ala442Val
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1023C>T
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1325C>T
  hgvsp: ENSP00000373745.3:p.Ala442Val
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11920
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala442Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

15-72492990-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492990
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492990
    reference: chr 15
allele count: 12
allele frequency: 1.016053647632595e-4
allele num: 118104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1314T>C
  hgvsp: ENST00000565184.1:c.1314T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1314T>C
  hgvsp: ENST00000389093.3:c.1314T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1314T>C
  hgvsp: ENST00000335181.5:c.1314T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1314T>C
  hgvsp: ENST00000561609.1:c.1314T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1314T>C
  hgvsp: ENST00000565154.1:c.1314T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1314T>C
  hgvsp: ENST00000568459.1:c.1314T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1314T>C
  hgvsp: ENST00000319622.6:c.1314T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.819T>C
  hgvsp: ENST00000568883.1:c.819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2113T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1269T>C
  hgvsp: ENST00000449901.2:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1405T>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1012T>C
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala438Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-72492996-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72492996
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 72492996
    reference: chr 15
allele count: 1
allele frequency: 8.497909514259493e-6
allele num: 117676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455736
  ensembl transcript: ENST00000565184
  gene symbol: PKM
  hgvsc: ENST00000565184.1:c.1308G>C
  hgvsp: ENSP00000455736.1:p.Arg436Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000334983
  ensembl transcript: ENST00000335181
  gene symbol: PKM
  hgvsc: ENST00000335181.5:c.1308G>C
  hgvsp: ENSP00000334983.5:p.Arg436Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000403365
  ensembl transcript: ENST00000449901
  gene symbol: PKM
  hgvsc: ENST00000449901.2:c.1263G>C
  hgvsp: ENSP00000403365.2:p.Arg421Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000455901
  ensembl transcript: ENST00000565154
  gene symbol: PKM
  hgvsc: ENST00000565154.1:c.1308G>C
  hgvsp: ENSP00000455901.1:p.Arg436Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000564440
  gene symbol: PKM
  hgvsc: ENST00000564440.1:n.2107G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000373745
  ensembl transcript: ENST00000389093
  gene symbol: PKM
  hgvsc: ENST00000389093.3:c.1308G>C
  hgvsp: ENSP00000373745.3:p.Arg436Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000457253
  ensembl transcript: ENST00000561609
  gene symbol: PKM
  hgvsc: ENST00000561609.1:c.1308G>C
  hgvsp: ENSP00000457253.1:p.Arg436Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456970
  ensembl transcript: ENST00000568459
  gene symbol: PKM
  hgvsc: ENST00000568459.1:c.1308G>C
  hgvsp: ENSP00000456970.1:p.Arg436Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000067225
  ensembl transcript: ENST00000565143
  gene symbol: PKM
  hgvsc: ENST00000565143.1:n.1399G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000320171
  ensembl transcript: ENST00000319622
  gene symbol: PKM
  hgvsc: ENST00000319622.6:c.1308G>C
  hgvsp: ENSP00000320171.6:p.Arg436Ser
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456004
  ensembl transcript: ENST00000567118
  gene symbol: PKM
  hgvsc: ENST00000567118.1:c.*1006G>C
  variant of: http://identifiers.org/hgnc/9021
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000067225
  ensembl protein: ENSP00000456100
  ensembl transcript: ENST00000568883
  gene symbol: PKM
  hgvsc: ENST00000568883.1:c.813G>C
  hgvsp: ENSP00000456100.1:p.Arg271Ser
  variant of: http://identifiers.org/hgnc/9021
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Arg436Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43823
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4068
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 828
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.642467643387425e-5
allele num: 60884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQ
type: SiteQuality
SIO_000300: 5.77e1

VQSLOD
type: SiteQuality
SIO_000300: -1.878e0

QD
type: SiteQuality
SIO_000300: 7.04e0

DP
type: SiteQuality
SIO_000300: 1.329989e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4203
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4329
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46354
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.124859392575928e-4
allele num: 62230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11058
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.280409731113956e-4
allele num: 15620
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: -6.4e-2

QD
type: SiteQuality
SIO_000300: 1.581e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

DP
type: SiteQuality
SIO_000300: 1.358094e6

VQSLOD
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.924e0

FS
type: SiteQuality
SIO_000300: 9.042e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 896
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.103049421661409e-4
allele num: 9510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63100
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11170
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15814
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.152e0

DP
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SIO_000300: 1.376006e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.056e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 1.704e0

MQ
type: SiteQuality
SIO_000300: 5.898e1

MQRankSum
type: SiteQuality
SIO_000300: -1.418e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

QD
type: SiteQuality
SIO_000300: 1.929e1

GenotypeDepth
all individuals: 7
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1072
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.185677021579322e-4
allele num: 8434
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.24e-1

MQ
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SIO_000300: 5.892e1

FS
type: SiteQuality
SIO_000300: 2.97e0

VQSLOD
type: SiteQuality
SIO_000300: -1.77e-1

QD
type: SiteQuality
SIO_000300: 1.318e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

DP
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SIO_000300: 1.384495e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

GenotypeDepth
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1071
bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183151916706105e-4
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63674
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
type: SiteQuality
SIO_000300: 1.237e0

DP
type: SiteQuality
SIO_000300: 1.389703e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.323e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.781e1

GenotypeDepth
all individuals: 6
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 171
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variant carriers: 0

GenotypeQuality
all individuals: 386
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variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.75e1
variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 383
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 922
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GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.129204869042776e-5
allele num: 63914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.872191712431353e-4
allele num: 16024
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.064409578860446e-4
allele num: 9688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.125e0

QD
type: SiteQuality
SIO_000300: 1.255e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
type: SiteQuality
SIO_000300: 1.39642e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

GenotypeDepth
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2379
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 162
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GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553711817532084e-5
allele num: 64362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16120
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.406185e6

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

BaseQRankSum
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SIO_000300: 6.98e-1

FS
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VQSLOD
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InbreedingCoeff
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SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 227
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64770
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.219821512447158e-4
allele num: 8516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 2.586e0

BaseQRankSum
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SIO_000300: -9.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

DP
type: SiteQuality
SIO_000300: 1.417097e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.134969325153375e-5
allele num: 16300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.420897e6

ReadPosRankSum
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ClippingRankSum
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QD
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MQRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 6.714e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-1

GenotypeDepth
all individuals: 5
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 224
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 936
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GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.619364375461936e-5
allele num: 64944
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.422446e6

VQSLOD
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SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.783e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

GenotypeDepth
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 1651
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 496
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GenotypeQuality
all individuals: 165
bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.533601202343343e-5
allele num: 65206
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

InbreedingCoeff
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SIO_000300: -5.0e-4

MQRankSum
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DP
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QD
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MQ
type: SiteQuality
SIO_000300: 5.993e1

VQSLOD
type: SiteQuality
SIO_000300: -1.47e-2

BaseQRankSum
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SIO_000300: -1.106e0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.968102073365231e-5
allele num: 10032
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65266
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.894e1

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-1

BaseQRankSum
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SIO_000300: -5.26e-1

VQSLOD
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SIO_000300: -8.941e-1

DP
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SIO_000300: 1.429207e6

ClippingRankSum
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SIO_000300: -1.009e0

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.138735420503377e-5
allele num: 16290
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65256
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.15e0

DP
type: SiteQuality
SIO_000300: 1.429733e6

FS
type: SiteQuality
SIO_000300: 5.895e0

MQ
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SIO_000300: 5.95e1

ReadPosRankSum
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SIO_000300: -7.27e-1

VQSLOD
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InbreedingCoeff
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SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 95
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.994017946161515e-4
allele num: 10030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65302
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 850
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
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BaseQRankSum
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FS
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VQSLOD
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SIO_000300: 1.09e0

MQRankSum
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SIO_000300: 8.82e-1

ReadPosRankSum
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SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

DP
type: SiteQuality
SIO_000300: 1.429036e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.989219405070872e-4
allele num: 10018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.339728591483388e-4
allele num: 8548
num of homozygotes: 0

Other
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VQSLOD
type: SiteQuality
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65058
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.185822095756526e-5
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num of homozygotes: 0

African
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FS
type: SiteQuality
SIO_000300: 2.23e0

ClippingRankSum
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DP
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64932
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.709401709401709e-4
allele num: 5850
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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South Asian
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.573118550213944e-5
allele num: 63568
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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DP
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BaseQRankSum
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MQ
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FS
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InbreedingCoeff
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SIO_000300: -1.2e-3

MQRankSum
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ReadPosRankSum
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SIO_000300: 6.840000000000001e-1

QD
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ClippingRankSum
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SIO_000300: 4.7e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11014
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 7.155635062611807e-4
allele num: 5590
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.57331655129012e-5
allele num: 63560
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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VQSLOD
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DP
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -6.1e-2

ReadPosRankSum
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SIO_000300: -7.0e-3

QD
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SIO_000300: 1.594e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.61025409809668e-5
allele num: 62102
num of homozygotes: 0

MQRankSum
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SIO_000300: 6.44e-1

InbreedingCoeff
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VQSLOD
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QD
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FS
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61454
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.578081831337982e-5
allele num: 15202
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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SIO_000300: 1.008e1

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: -1.2e-3

VQSLOD
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SIO_000300: 2.25e0

BaseQRankSum
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SIO_000300: -1.185e0

DP
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SIO_000300: 1.304685e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.67913438418381e-5
allele num: 14972
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60110
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BaseQRankSum
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SIO_000300: -1.66e0

FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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QD
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DP
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GenotypeDepth
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variant carriers: 4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.587413574149852e-4
allele num: 56696
num of homozygotes: 0

European (Finnish)
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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DP
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QD
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MQRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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European (Finnish)
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ReadPosRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.901646826151447e-5
allele num: 52586
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.58e-1

BaseQRankSum
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FS
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InbreedingCoeff
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SIO_000300: -3.9e-3

QD
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VQSLOD
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ReadPosRankSum
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DP
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SIO_000300: 9.97854e5

MQRankSum
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SIO_000300: -1.232e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51876
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 7.260055176419341e-5
allele num: 13774
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6594
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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MQ
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SIO_000300: 5.896e1

DP
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SIO_000300: 9.71211e5

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.926114257097731e-5
allele num: 51918
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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QD
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -2.199e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 12846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.192597789861428e-5
allele num: 45608
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

DP
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QD
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VQSLOD
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.829e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
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allele frequency: 7.99744081893794e-5
allele num: 12504
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
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SIO_000300: -2.983e0

ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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FS
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QD
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42378
num of homozygotes: 0

East Asian
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Other
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South Asian
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allele frequency: 1.132136503315543e-3
allele num: 12366
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3132
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.634521085322001e-4
allele num: 6118
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MQRankSum
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MQ
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VQSLOD
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DP
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FS
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 1.204935415461731e-4
allele num: 41496
num of homozygotes: 0

East Asian
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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Other
type: Population
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allele num: 542
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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DP
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 508
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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African
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allele count: 0
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Latino
type: Population
allele count: 1
allele frequency: 1.923816852635629e-4
allele num: 5198
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.309e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.61e-2

DP
type: SiteQuality
SIO_000300: 7.44279e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.586e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.66e0

GenotypeQuality
all individuals: 13811
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6378
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13888
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3795
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4643
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.559089491736826e-4
allele num: 6414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.245e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.35e-1

DP
type: SiteQuality
SIO_000300: 2.044428e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.221e0

FS
type: SiteQuality
SIO_000300: 3.123e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6581
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13859
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variant carriers: 1

GenotypeQuality
all individuals: 1869
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15136
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2672
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variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3159
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51828009231143e-5
allele num: 65864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.736e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

VQSLOD
type: SiteQuality
SIO_000300: -5.458e-1

DP
type: SiteQuality
SIO_000300: 2.060847e6

GenotypeQuality
all individuals: 256
bin: 2.75e1
variant carriers: 173

GenotypeQuality
all individuals: 2556
bin: 6.75e1
variant carriers: 1596

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 61

GenotypeQuality
all individuals: 4441
bin: 6.25e1
variant carriers: 1310

GenotypeQuality
all individuals: 2232
bin: 7.75e1
variant carriers: 1849

GenotypeQuality
all individuals: 1343
bin: 7.25e1
variant carriers: 997

GenotypeQuality
all individuals: 1180
bin: 8.75e1
variant carriers: 1073

GenotypeQuality
all individuals: 166
bin: 2.5e0
variant carriers: 62

GenotypeQuality
all individuals: 1966
bin: 9.25e1
variant carriers: 1806

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 70

GenotypeQuality
all individuals: 739
bin: 5.75e1
variant carriers: 634

GenotypeQuality
all individuals: 599
bin: 3.75e1
variant carriers: 434

GenotypeQuality
all individuals: 39570
bin: 9.75e1
variant carriers: 39148

GenotypeQuality
all individuals: 497
bin: 4.25e1
variant carriers: 388

GenotypeQuality
all individuals: 446
bin: 3.25e1
variant carriers: 321

GenotypeQuality
all individuals: 1097
bin: 5.25e1
variant carriers: 976

GenotypeQuality
all individuals: 267
bin: 2.25e1
variant carriers: 158

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 93

GenotypeQuality
all individuals: 889
bin: 4.75e1
variant carriers: 759

South Asian
type: Population
allele count: 11594
allele frequency: 7.040320621812e-1
allele num: 16468
num of homozygotes: 4125

East Asian
type: Population
allele count: 3315
allele frequency: 3.892672616251762e-1
allele num: 8516
num of homozygotes: 610

European (Finnish)
type: Population
allele count: 4685
allele frequency: 7.252321981424149e-1
allele num: 6460
num of homozygotes: 1681

European (Non-Finnish)
type: Population
allele count: 48538
allele frequency: 7.351569126378287e-1
allele num: 66024
num of homozygotes: 17786

African
type: Population
allele count: 5629
allele frequency: 5.476746448725432e-1
allele num: 10278
num of homozygotes: 1543

Latino
type: Population
allele count: 7188
allele frequency: 6.309691011235955e-1
allele num: 11392
num of homozygotes: 2267

Other
type: Population
allele count: 625
allele frequency: 6.991051454138703e-1
allele num: 894
num of homozygotes: 224

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.243e0

DP
type: SiteQuality
SIO_000300: 2.48432e6

QD
type: SiteQuality
SIO_000300: 2.423e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.77e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

FS
type: SiteQuality
SIO_000300: 1.548e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

GenotypeQuality
all individuals: 584
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4212
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5219
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25951
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9260
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508477644361311e-5
allele num: 66292
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

FS
type: SiteQuality
SIO_000300: 2.285e0

DP
type: SiteQuality
SIO_000300: 1.768987e6

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.121e0

VQSLOD
type: SiteQuality
SIO_000300: -1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.83e-1

QD
type: SiteQuality
SIO_000300: 2.025e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 562
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variant carriers: 0

GenotypeQuality
all individuals: 416
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
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variant carriers: 0

GenotypeQuality
all individuals: 582
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variant carriers: 0

GenotypeQuality
all individuals: 710
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 4117
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.254e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

FS
type: SiteQuality
SIO_000300: 5.342e0

MQRankSum
type: SiteQuality
SIO_000300: -1.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.381e0

DP
type: SiteQuality
SIO_000300: 1.781005e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 8.050000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 374
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variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9333
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4117
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.381e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.04e-1

DP
type: SiteQuality
SIO_000300: 1.781005e6

MQRankSum
type: SiteQuality
SIO_000300: -1.95e-1

FS
type: SiteQuality
SIO_000300: 5.342e0

VQSLOD
type: SiteQuality
SIO_000300: -3.254e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

QD
type: SiteQuality
SIO_000300: 8.050000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

GenotypeQuality
all individuals: 614
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 558
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 29567
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variant carriers: 0

GenotypeQuality
all individuals: 313
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variant carriers: 0

GenotypeQuality
all individuals: 4102
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variant carriers: 0

GenotypeQuality
all individuals: 521
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variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
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GenotypeQuality
all individuals: 3289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5201
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9361
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

DP
type: SiteQuality
SIO_000300: 1.78549e6

FS
type: SiteQuality
SIO_000300: 2.861e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.837e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

QD
type: SiteQuality
SIO_000300: 1.418e1

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3293
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 1779
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variant carriers: 0

GenotypeQuality
all individuals: 9353
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variant carriers: 0

GenotypeQuality
all individuals: 504
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variant carriers: 0

GenotypeQuality
all individuals: 308
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -2.06e-1

InbreedingCoeff
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SIO_000300: 1.11e-2

MQRankSum
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QD
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SIO_000300: 1.213e1

VQSLOD
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SIO_000300: 5.23e0

DP
type: SiteQuality
SIO_000300: 1.787027e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013863773357444e-5
allele num: 66360
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.935e1

InbreedingCoeff
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SIO_000300: 1.33e-2

FS
type: SiteQuality
SIO_000300: 5.011e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.06e-1

MQRankSum
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SIO_000300: -1.025e0

DP
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SIO_000300: 1.791533e6

BaseQRankSum
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SIO_000300: -1.957e0

QD
type: SiteQuality
SIO_000300: 1.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506704836522525e-5
allele num: 66370
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

InbreedingCoeff
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SIO_000300: 1.27e-2

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -3.014e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.14e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.792636e6

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012683397101799e-5
allele num: 66386
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.81e-1

FS
type: SiteQuality
SIO_000300: 3.7e0

ReadPosRankSum
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SIO_000300: -7.35e-1

DP
type: SiteQuality
SIO_000300: 1.794853e6

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
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SIO_000300: 1.24e-2

BaseQRankSum
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SIO_000300: -1.961e0

VQSLOD
type: SiteQuality
SIO_000300: 8.81e-1

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4080
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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VQSLOD
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MQRankSum
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SIO_000300: -1.67e-1

ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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SIO_000300: 5.972e1

BaseQRankSum
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SIO_000300: -9.77e-1

DP
type: SiteQuality
SIO_000300: 1.801552e6

QD
type: SiteQuality
SIO_000300: 2.615e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.009872381411028e-5
allele num: 66448
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6562
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East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504211793020457e-5
allele num: 66480
num of homozygotes: 0

Other
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VQSLOD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

African
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.511820970943873e-5
allele num: 66492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.807225e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
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SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.53e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

FS
type: SiteQuality
SIO_000300: 3.984e0

QD
type: SiteQuality
SIO_000300: 1.102e1

GenotypeDepth
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e0

BaseQRankSum
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SIO_000300: -2.317e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-1

FS
type: SiteQuality
SIO_000300: 2.94e0

DP
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SIO_000300: 1.809185e6

MQ
type: SiteQuality
SIO_000300: 5.995e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.538e1

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.66183574879227e-5
allele num: 10350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
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SIO_000300: -2.953e0

ClippingRankSum
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SIO_000300: -9.05e-1

VQSLOD
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SIO_000300: -5.114e-1

DP
type: SiteQuality
SIO_000300: 1.809409e6

FS
type: SiteQuality
SIO_000300: 5.226e0

QD
type: SiteQuality
SIO_000300: 8.09e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeDepth
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5181
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2886
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.343999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.92e-1

DP
type: SiteQuality
SIO_000300: 1.80968e6

VQSLOD
type: SiteQuality
SIO_000300: -1.307e-1

BaseQRankSum
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SIO_000300: 1.67e0

MQRankSum
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SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.346e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

GenotypeDepth
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.642e0

MQ
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SIO_000300: 5.983e1

MQRankSum
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SIO_000300: 1.03e0

DP
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SIO_000300: 1.809881e6

ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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SIO_000300: -7.389999999999999e-2

FS
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SIO_000300: 1.267e0

QD
type: SiteQuality
SIO_000300: 1.617e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQ
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VQSLOD
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ClippingRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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SIO_000300: -8.0e-4

DP
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SIO_000300: 1.810019e6

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
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num of homozygotes: 0

Latino
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East Asian
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European (Finnish)
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MQRankSum
type: SiteQuality
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QD
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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ClippingRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
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Latino
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African
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European (Non-Finnish)
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allele count: 6
allele frequency: 9.020928554245851e-5
allele num: 66512
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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DP
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MQ
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FS
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BaseQRankSum
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SIO_000300: -1.189e0

ClippingRankSum
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SIO_000300: 3.12e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
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allele frequency: 9.665571235260003e-5
allele num: 10346
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

South Asian
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Other
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allele num: 904
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African
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.505525277769414e-5
allele num: 66422
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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MQ
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FS
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -5.73e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.592912705272256e-4
allele num: 11570
num of homozygotes: 0

South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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FS
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VQSLOD
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Other
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East Asian
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QD
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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Other
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Latino
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European (Non-Finnish)
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East Asian
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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Other
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Latino
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allele frequency: 0.0e0
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.160631383472609e-4
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Latino
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African
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South Asian
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European (Non-Finnish)
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Other
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DP
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MQ
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MQRankSum
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QD
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BaseQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65830
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South Asian
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Latino
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European (Finnish)
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African
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MQRankSum
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SIO_000300: 8.9e-1

BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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FS
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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East Asian
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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FS
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MQ
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

African
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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East Asian
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ReadPosRankSum
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FS
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 64860
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Latino
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East Asian
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South Asian
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African
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European (Finnish)
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Other
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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DP
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QD
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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