16-57059833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059833
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059833
    reference: chr 16
allele count: 6
allele frequency: 4.948861761794787e-5
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.978C>T
  hgvsp: ENST00000308149.7:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.978C>T
  hgvsp: ENST00000539881.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.978C>T
  hgvsp: ENST00000436936.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.978C>T
  hgvsp: ENST00000262510.6:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.160C>T
  hgvsp: ENST00000545081.1:c.160C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.978C>T
  hgvsp: ENST00000539144.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.235C>T
  hgvsp: ENST00000538805.1:c.235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr326Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-57059860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059860
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059860
    reference: chr 16
allele count: 1
allele frequency: 8.267742575567167e-6
allele num: 120952
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1005C>T
  hgvsp: ENST00000262510.6:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1005C>T
  hgvsp: ENST00000436936.1:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1005C>T
  hgvsp: ENST00000539144.1:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1005C>T
  hgvsp: ENST00000539881.1:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.262C>T
  hgvsp: ENST00000538805.1:c.262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.187C>T
  hgvsp: ENST00000545081.1:c.187C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1005C>T
  hgvsp: ENST00000308149.7:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11913
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5008
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr335Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS

16-57059864-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059864
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059864
    reference: chr 16
allele count: 1
allele frequency: 8.271024945411235e-6
allele num: 120904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.191C>T
  hgvsp: ENST00000545081.1:c.191C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.266C>T
  hgvsp: ENST00000538805.1:c.266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1009C>T
  hgvsp: ENST00000436936.1:c.1009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1009C>T
  hgvsp: ENST00000539881.1:c.1009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1009C>T
  hgvsp: ENST00000539144.1:c.1009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1009C>T
  hgvsp: ENST00000262510.6:c.1009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1009C>T
  hgvsp: ENST00000308149.7:c.1009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28759
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu337Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-57059877-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059877
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059877
    reference: chr 16
allele count: 12
allele frequency: 9.933281459530156e-5
allele num: 120806
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1022G>A
  hgvsp: ENSP00000308886.7:p.Arg341Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1022G>A
  hgvsp: ENSP00000389739.1:p.Arg341Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.279G>A
  hgvsp: ENSP00000442906.1:p.Arg94Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1022G>A
  hgvsp: ENSP00000441727.1:p.Arg341Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1022G>A
  hgvsp: ENSP00000441679.1:p.Arg341Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.204G>A
  hgvsp: ENSP00000443825.1:p.Arg69Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1022G>A
  hgvsp: ENSP00000262510.6:p.Arg341Gln
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7909
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg341Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

16-57059878-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059878
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059878
    reference: chr 16
allele count: 1
allele frequency: 8.277597510098669e-6
allele num: 120808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.205G>A
  hgvsp: ENST00000545081.1:c.205G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1023G>A
  hgvsp: ENST00000436936.1:c.1023G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.280G>A
  hgvsp: ENST00000538805.1:c.280G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1023G>A
  hgvsp: ENST00000539881.1:c.1023G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1023G>A
  hgvsp: ENST00000539144.1:c.1023G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1023G>A
  hgvsp: ENST00000262510.6:c.1023G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1023G>A
  hgvsp: ENST00000308149.7:c.1023G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg341Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

16-57059886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059886
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059886
    reference: chr 16
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1031C>T
  hgvsp: ENSP00000441727.1:p.Ala344Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.213C>T
  hgvsp: ENSP00000443825.1:p.Ala72Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1031C>T
  hgvsp: ENSP00000308886.7:p.Ala344Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1031C>T
  hgvsp: ENSP00000441679.1:p.Ala344Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1031C>T
  hgvsp: ENSP00000262510.6:p.Ala344Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.288C>T
  hgvsp: ENSP00000442906.1:p.Ala97Val
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1031C>T
  hgvsp: ENSP00000389739.1:p.Ala344Val
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28749
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala344Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

16-57059890-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059890
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059890
    reference: chr 16
allele count: 1
allele frequency: 8.285004142502071e-6
allele num: 120700
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1035C>G
  hgvsp: ENST00000262510.6:c.1035C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1035C>G
  hgvsp: ENST00000308149.7:c.1035C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1035C>G
  hgvsp: ENST00000539144.1:c.1035C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1035C>G
  hgvsp: ENST00000539881.1:c.1035C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.292C>G
  hgvsp: ENST00000538805.1:c.292C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1035C>G
  hgvsp: ENST00000436936.1:c.1035C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.217C>G
  hgvsp: ENST00000545081.1:c.217C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr345Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

16-57059898-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059898
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059898
    reference: chr 16
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1043C>G
  hgvsp: ENSP00000441727.1:p.Pro348Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1043C>G
  hgvsp: ENSP00000308886.7:p.Pro348Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.225C>G
  hgvsp: ENSP00000443825.1:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.300C>G
  hgvsp: ENSP00000442906.1:p.Pro101Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1043C>G
  hgvsp: ENSP00000441679.1:p.Pro348Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1043C>G
  hgvsp: ENSP00000262510.6:p.Pro348Arg
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1043C>G
  hgvsp: ENSP00000389739.1:p.Pro348Arg
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4906
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro348Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

16-57059905-G-GCTGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059905
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059909
    reference: chr 16
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: GCTGC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1067_1070dupCTGC
  hgvsp: ENSP00000441727.1:p.Glu358CysfsTer12
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.249_252dupCTGC
  hgvsp: ENSP00000443825.1:p.Glu86CysfsTer12
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1067_1070dupCTGC
  hgvsp: ENSP00000308886.7:p.Glu358CysfsTer12
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1067_1070dupCTGC
  hgvsp: ENSP00000389739.1:p.Glu358CysfsTer12
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1067_1070dupCTGC
  hgvsp: ENSP00000441679.1:p.Glu358CysfsTer12
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.324_327dupCTGC
  hgvsp: ENSP00000442906.1:p.Glu111CysfsTer12
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1067_1070dupCTGC
  hgvsp: ENSP00000262510.6:p.Glu358CysfsTer12
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28718
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11285
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu358CysfsTer12
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

16-57059905-GCTGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059905
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059901
    reference: chr 16
allele count: 5
allele frequency: 4.147037356512508e-5
allele num: 120568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.324_327delCTGC
  hgvsp: ENSP00000442906.1:p.Pro109GlnfsTer20
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1067_1070delCTGC
  hgvsp: ENSP00000308886.7:p.Pro356GlnfsTer20
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1067_1070delCTGC
  hgvsp: ENSP00000262510.6:p.Pro356GlnfsTer20
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.249_252delCTGC
  hgvsp: ENSP00000443825.1:p.Pro84GlnfsTer20
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1067_1070delCTGC
  hgvsp: ENSP00000389739.1:p.Pro356GlnfsTer20
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1067_1070delCTGC
  hgvsp: ENSP00000441679.1:p.Pro356GlnfsTer20
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1067_1070delCTGC
  hgvsp: ENSP00000441727.1:p.Pro356GlnfsTer20
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro356GlnfsTer20
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: GCTGC
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

16-57059912-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059912
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059912
    reference: chr 16
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1057G>T
  hgvsp: ENSP00000441727.1:p.Ala353Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.314G>T
  hgvsp: ENSP00000442906.1:p.Ala106Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.239G>T
  hgvsp: ENSP00000443825.1:p.Ala81Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1057G>T
  hgvsp: ENSP00000308886.7:p.Ala353Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1057G>T
  hgvsp: ENSP00000441679.1:p.Ala353Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1057G>T
  hgvsp: ENSP00000262510.6:p.Ala353Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1057G>T
  hgvsp: ENSP00000389739.1:p.Ala353Ser
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28720
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala353Ser
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

16-57059933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059933
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059933
    reference: chr 16
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1078G>A
  hgvsp: ENSP00000308886.7:p.Ala360Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1078G>A
  hgvsp: ENSP00000262510.6:p.Ala360Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1078G>A
  hgvsp: ENSP00000441679.1:p.Ala360Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.260G>A
  hgvsp: ENSP00000443825.1:p.Ala88Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1078G>A
  hgvsp: ENSP00000389739.1:p.Ala360Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1078G>A
  hgvsp: ENSP00000441727.1:p.Ala360Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.335G>A
  hgvsp: ENSP00000442906.1:p.Ala113Thr
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12105
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4868
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala360Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-57059961-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059961
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059961
    reference: chr 16
allele count: 1
allele frequency: 8.274036074797286e-6
allele num: 120860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.363G>A
  hgvsp: ENSP00000442906.1:p.Gly122Glu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1106G>A
  hgvsp: ENSP00000389739.1:p.Gly369Glu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1106G>A
  hgvsp: ENSP00000441679.1:p.Gly369Glu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1106G>A
  hgvsp: ENSP00000262510.6:p.Gly369Glu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.288G>A
  hgvsp: ENSP00000443825.1:p.Gly97Glu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1106G>A
  hgvsp: ENSP00000441727.1:p.Gly369Glu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1106G>A
  hgvsp: ENSP00000308886.7:p.Gly369Glu
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly369Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

16-57059966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059966
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059966
    reference: chr 16
allele count: 3
allele frequency: 2.481430627471092e-5
allele num: 120898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.293C>T
  hgvsp: ENSP00000443825.1:p.Arg99Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1111C>T
  hgvsp: ENSP00000389739.1:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1111C>T
  hgvsp: ENSP00000308886.7:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1111C>T
  hgvsp: ENSP00000441679.1:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1111C>T
  hgvsp: ENSP00000441727.1:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1111C>T
  hgvsp: ENSP00000262510.6:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.368C>T
  hgvsp: ENSP00000442906.1:p.Arg124Trp
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg371Trp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-57059967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059967
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059967
    reference: chr 16
allele count: 4
allele frequency: 3.307862789851477e-5
allele num: 120924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1112G>A
  hgvsp: ENSP00000389739.1:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1112G>A
  hgvsp: ENSP00000262510.6:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.369G>A
  hgvsp: ENSP00000442906.1:p.Arg124Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.294G>A
  hgvsp: ENSP00000443825.1:p.Arg99Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1112G>A
  hgvsp: ENSP00000441727.1:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1112G>A
  hgvsp: ENSP00000441679.1:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1112G>A
  hgvsp: ENSP00000308886.7:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12713
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28721
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Arg371Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

16-57059971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059971
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059971
    reference: chr 16
allele count: 1
allele frequency: 8.265282507356101e-6
allele num: 120988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1116G>A
  hgvsp: ENST00000539881.1:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1116G>A
  hgvsp: ENST00000262510.6:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1116G>A
  hgvsp: ENST00000539144.1:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.298G>A
  hgvsp: ENST00000545081.1:c.298G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.373G>A
  hgvsp: ENST00000538805.1:c.373G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1116G>A
  hgvsp: ENST00000436936.1:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1116G>A
  hgvsp: ENST00000308149.7:c.1116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val372Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/16-57059984-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059984
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059984
    reference: chr 16
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1129A>C
  hgvsp: ENSP00000308886.7:p.Asn377His
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.386A>C
  hgvsp: ENSP00000442906.1:p.Asn130His
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1129A>C
  hgvsp: ENSP00000441727.1:p.Asn377His
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1129A>C
  hgvsp: ENSP00000262510.6:p.Asn377His
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1129A>C
  hgvsp: ENSP00000389739.1:p.Asn377His
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.311A>C
  hgvsp: ENSP00000443825.1:p.Asn105His
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1129A>C
  hgvsp: ENSP00000441679.1:p.Asn377His
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn377His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-57059987-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059987
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059987
    reference: chr 16
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.389C>A
  hgvsp: ENSP00000442906.1:p.His131Asn
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1132C>A
  hgvsp: ENSP00000389739.1:p.His378Asn
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1132C>A
  hgvsp: ENSP00000262510.6:p.His378Asn
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1132C>A
  hgvsp: ENSP00000441727.1:p.His378Asn
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1132C>A
  hgvsp: ENSP00000441679.1:p.His378Asn
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1132C>A
  hgvsp: ENSP00000308886.7:p.His378Asn
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.314C>A
  hgvsp: ENSP00000443825.1:p.His106Asn
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3144
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His378Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

16-57059998-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059998
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059998
    reference: chr 16
allele count: 9
allele frequency: 7.427213309566251e-5
allele num: 121176
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1143C>T
  hgvsp: ENST00000262510.6:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.400C>T
  hgvsp: ENST00000538805.1:c.400C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1143C>T
  hgvsp: ENST00000308149.7:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.325C>T
  hgvsp: ENST00000545081.1:c.325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1143C>T
  hgvsp: ENST00000539881.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1143C>T
  hgvsp: ENST00000539144.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1143C>T
  hgvsp: ENST00000436936.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4959
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28725
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser381Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

16-57059999-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059999
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059999
    reference: chr 16
allele count: 35
allele frequency: 2.888217722103943e-4
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1144G>A
  hgvsp: ENSP00000262510.6:p.Ala382Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.326G>A
  hgvsp: ENSP00000443825.1:p.Ala110Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1144G>A
  hgvsp: ENSP00000441727.1:p.Ala382Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1144G>A
  hgvsp: ENSP00000308886.7:p.Ala382Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1144G>A
  hgvsp: ENSP00000389739.1:p.Ala382Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.401G>A
  hgvsp: ENSP00000442906.1:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1144G>A
  hgvsp: ENSP00000441679.1:p.Ala382Thr
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9059
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala382Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-57059999-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57059999
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57059999
    reference: chr 16
allele count: 3
allele frequency: 2.475615190374808e-5
allele num: 121182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1144G>T
  hgvsp: ENSP00000441679.1:p.Ala382Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1144G>T
  hgvsp: ENSP00000262510.6:p.Ala382Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.401G>T
  hgvsp: ENSP00000442906.1:p.Ala135Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1144G>T
  hgvsp: ENSP00000308886.7:p.Ala382Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1144G>T
  hgvsp: ENSP00000441727.1:p.Ala382Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1144G>T
  hgvsp: ENSP00000389739.1:p.Ala382Ser
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.326G>T
  hgvsp: ENSP00000443825.1:p.Ala110Ser
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala382Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

15-93487763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93487763
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93487763
    reference: chr 15
allele count: 1
allele frequency: 8.589736982253604e-6
allele num: 116418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1153+18C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1153+18C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.2709C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.230+18C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1617+18C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1192+18C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1153+18C>T
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16479
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28486
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7092
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

15-93487764-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93487764
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93487764
    reference: chr 15
allele count: 1
allele frequency: 8.583101589590414e-6
allele num: 116508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1617+19A>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.2710A>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1153+19A>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1192+19A>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.230+19A>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1153+19A>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1153+19A>T
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28821
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-93487765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93487765
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93487765
    reference: chr 15
allele count: 1
allele frequency: 8.597121683660311e-6
allele num: 116318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1192+20C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1617+20C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.230+20C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1153+20C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1153+20C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.2711C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1153+20C>T
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

15-93487767-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93487767
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93487767
    reference: chr 15
allele count: 1
allele frequency: 8.603926832206218e-6
allele num: 116226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1617+22T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.230+22T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1153+22T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1192+22T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.2713T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1153+22T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1153+22T>G
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15379
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7888
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/15-93487768-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93487768
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93487768
    reference: chr 15
allele count: 1
allele frequency: 8.605851979345956e-6
allele num: 116200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1617+23C>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.230+23C>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1192+23C>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1153+23C>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1153+23C>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.2714C>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1153+23C>A
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16056
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5231
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

15-93487773-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93487773
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93487773
    reference: chr 15
allele count: 1
allele frequency: 8.65695932960507e-6
allele num: 115514
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1617+28A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1153+28A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.2719A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1153+28A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1153+28A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.230+28A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1192+28A>G
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8895
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4839
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

15-93487777-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93487777
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93487777
    reference: chr 15
allele count: 4
allele frequency: 3.474333362286111e-5
allele num: 115130
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.230+32T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.2723T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1153+32T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1153+32T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1192+32T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1153+32T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1617+32T>G
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5616
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3845
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4538
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

16-57060004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57060004
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57060004
    reference: chr 16
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1149G>A
  hgvsp: ENST00000262510.6:c.1149G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1149G>A
  hgvsp: ENST00000308149.7:c.1149G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1149G>A
  hgvsp: ENST00000539881.1:c.1149G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.331G>A
  hgvsp: ENST00000545081.1:c.331G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1149G>A
  hgvsp: ENST00000539144.1:c.1149G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1149G>A
  hgvsp: ENST00000436936.1:c.1149G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.406G>A
  hgvsp: ENST00000538805.1:c.406G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9071
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln383Gln
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

16-57060009-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57060009
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57060009
    reference: chr 16
allele count: 25
allele frequency: 2.062774348988415e-4
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1154C>T
  hgvsp: ENSP00000262510.6:p.Ser385Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1154C>T
  hgvsp: ENSP00000441679.1:p.Ser385Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1154C>T
  hgvsp: ENSP00000441727.1:p.Ser385Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.411C>T
  hgvsp: ENSP00000442906.1:p.Ser138Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.336C>T
  hgvsp: ENSP00000443825.1:p.Ser113Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1154C>T
  hgvsp: ENSP00000308886.7:p.Ser385Leu
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1154C>T
  hgvsp: ENSP00000389739.1:p.Ser385Leu
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6603
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28720
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4963
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser385Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

16-57060010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57060010
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 57060010
    reference: chr 16
allele count: 12
allele frequency: 9.901643672849693e-5
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000308886
  ensembl transcript: ENST00000308149
  gene symbol: NLRC5
  hgvsc: ENST00000308149.7:c.1155G>A
  hgvsp: ENST00000308149.7:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000389739
  ensembl transcript: ENST00000436936
  gene symbol: NLRC5
  hgvsc: ENST00000436936.1:c.1155G>A
  hgvsp: ENST00000436936.1:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000442906
  ensembl transcript: ENST00000538805
  gene symbol: NLRC5
  hgvsc: ENST00000538805.1:c.412G>A
  hgvsp: ENST00000538805.1:c.412G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000262510
  ensembl transcript: ENST00000262510
  gene symbol: NLRC5
  hgvsc: ENST00000262510.6:c.1155G>A
  hgvsp: ENST00000262510.6:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441727
  ensembl transcript: ENST00000539144
  gene symbol: NLRC5
  hgvsc: ENST00000539144.1:c.1155G>A
  hgvsp: ENST00000539144.1:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000443825
  ensembl transcript: ENST00000545081
  gene symbol: NLRC5
  hgvsc: ENST00000545081.1:c.337G>A
  hgvsp: ENST00000545081.1:c.337G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140853
  ensembl protein: ENSP00000441679
  ensembl transcript: ENST00000539881
  gene symbol: NLRC5
  hgvsc: ENST00000539881.1:c.1155G>A
  hgvsp: ENST00000539881.1:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29933
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4963
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12954
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser385Ser
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

15-93487782-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93487782
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93487782
    reference: chr 15
allele count: 1
allele frequency: 8.74018913769294e-6
allele num: 114414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.2728C>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1153+37C>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.230+37C>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1153+37C>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1153+37C>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1192+37C>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1617+37C>G
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12925
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4894
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6577
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-93487784-TGAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93487784
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93487781
    reference: chr 15
allele count: 1
allele frequency: 8.77608691836484e-6
allele num: 113946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1617+42_1617+44delGGA
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1192+42_1192+44delGGA
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1153+42_1153+44delGGA
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.230+42_230+44delGGA
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.2733_2735delGGA
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1153+42_1153+44delGGA
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1153+42_1153+44delGGA
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4473
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6017
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14203
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: TGAG
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

15-93487790-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93487790
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93487790
    reference: chr 15
allele count: 1
allele frequency: 8.813834194151139e-6
allele num: 113458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1153+45A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1153+45A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1153+45A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.2736A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1617+45A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1192+45A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.230+45A>G
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6836
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

15-93489002-ATTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489002
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93488999
    reference: chr 15
allele count: 1
allele frequency: 1.144714851530484e-5
allele num: 87358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.3952_3954delTTC
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1618-45_1618-43delTTC
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1154-45_1154-43delTTC
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1193-45_1193-43delTTC
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1154-45_1154-43delTTC
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-262_231-260delTTC
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1154-45_1154-43delTTC
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7488
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4415
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: ATTC
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

15-93489005-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489005
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489005
    reference: chr 15
allele count: 14
allele frequency: 1.604143272910603e-4
allele num: 87274
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1154-46C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-263C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.3951C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1154-46C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1193-46C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1154-46C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1618-46C>T
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15883
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13191
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9012
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6656
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6048
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10655
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

15-93489014-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489014
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489014
    reference: chr 15
allele count: 1
allele frequency: 1.131528921879243e-5
allele num: 88376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1154-37G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1618-37G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-254G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1154-37G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.3960G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1154-37G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1193-37G>A
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13850
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

15-93489026-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489026
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489026
    reference: chr 15
allele count: 1
allele frequency: 1.097164925831651e-5
allele num: 91144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1618-25T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1193-25T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1154-25T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.3972T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1154-25T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-242T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1154-25T>A
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-93489029-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489029
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489029
    reference: chr 15
allele count: 1
allele frequency: 1.084410514444348e-5
allele num: 92216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1154-22G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-239G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1154-22G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1618-22G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.3975G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1193-22G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1154-22G>A
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4401
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3540
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS

15-93489029-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489029
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489029
    reference: chr 15
allele count: 4
allele frequency: 4.337642057777392e-5
allele num: 92216
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1154-22G>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1154-22G>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.3975G>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1154-22G>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1193-22G>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1618-22G>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-239G>C
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24792
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

15-93489039-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489039
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489039
    reference: chr 15
allele count: 1
allele frequency: 1.032034346103038e-5
allele num: 96896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1154-12T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-229T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1154-12T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1154-12T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1193-12T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1618-12T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.3985T>G
  variant of: http://identifiers.org/hgnc/1917
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

15-93489045-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489045
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489044
    reference: chr 15
allele count: 2
allele frequency: 2.010211876331765e-5
allele num: 99492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1154-3delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1618-3delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1154-3delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1193-3delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.3994delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1154-3delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-220delT
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1154-3delT
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: GT
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-93489046-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489046
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489046
    reference: chr 15
allele count: 8
allele frequency: 7.994723482501548e-5
allele num: 100066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1618-5T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1154-5T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1193-5T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.3992T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1154-5T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1154-5T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-222T>A
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32764
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10406
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35053
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1154-5T>A
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

15-93489052-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489052
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489052
    reference: chr 15
allele count: 3
allele frequency: 2.923064931015668e-5
allele num: 102632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1155T>A
  hgvsp: ENST00000557381.1:c.1155T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1619T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1194T>A
  hgvsp: ENST00000536619.1:c.1194T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1155T>A
  hgvsp: ENST00000420239.2:c.1155T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.3998T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1155T>A
  hgvsp: ENST00000394196.4:c.1155T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-216T>A
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9371
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1155T>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

15-93489058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489058
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489058
    reference: chr 15
allele count: 1
allele frequency: 9.594166746618056e-6
allele num: 104230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1161G>A
  hgvsp: ENST00000557381.1:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1161G>A
  hgvsp: ENST00000394196.4:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1161G>A
  hgvsp: ENST00000420239.2:c.1161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1200G>A
  hgvsp: ENST00000536619.1:c.1200G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1625G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-210G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4004G>A
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys387Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

15-93489069-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489069
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489069
    reference: chr 15
allele count: 3
allele frequency: 2.822519945807617e-5
allele num: 106288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1636C>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1172C>G
  hgvsp: ENSP00000406581.2:p.Ser391Cys
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1172C>G
  hgvsp: ENSP00000451366.1:p.Ser391Cys
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1172C>G
  hgvsp: ENSP00000377747.4:p.Ser391Cys
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4015C>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-199C>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1211C>G
  hgvsp: ENSP00000443618.1:p.Ser404Cys
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7431
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35967
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39015
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser391Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-93489071-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489071
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489071
    reference: chr 15
allele count: 12
allele frequency: 1.126760563380282e-4
allele num: 106500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1638A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1213A>G
  hgvsp: ENSP00000443618.1:p.Thr405Ala
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1174A>G
  hgvsp: ENSP00000377747.4:p.Thr392Ala
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1174A>G
  hgvsp: ENSP00000451366.1:p.Thr392Ala
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4017A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1174A>G
  hgvsp: ENSP00000406581.2:p.Thr392Ala
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-197A>G
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7496
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr392Ala
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

15-93489074-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489074
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489074
    reference: chr 15
allele count: 1
allele frequency: 9.359790340696368e-6
allele num: 106840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1177T>A
  hgvsp: ENSP00000451366.1:p.Leu393Met
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1177T>A
  hgvsp: ENSP00000406581.2:p.Leu393Met
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1216T>A
  hgvsp: ENSP00000443618.1:p.Leu406Met
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-194T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1641T>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1177T>A
  hgvsp: ENSP00000377747.4:p.Leu393Met
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4020T>A
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu393Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

15-93489085-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489085
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489085
    reference: chr 15
allele count: 10
allele frequency: 9.317406779345173e-5
allele num: 107326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1652A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1188A>G
  hgvsp: ENST00000420239.2:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-183A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1188A>G
  hgvsp: ENST00000557381.1:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4031A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1188A>G
  hgvsp: ENST00000394196.4:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1227A>G
  hgvsp: ENST00000536619.1:c.1227A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7917
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8030
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr396Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-93489112-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489112
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489112
    reference: chr 15
allele count: 2
allele frequency: 1.878322282537238e-5
allele num: 106478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-156A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4041+17A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1237+17A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1198+17A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1198+17A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1198+17A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1662+17A>G
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4398
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28565
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-93489115-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489115
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489115
    reference: chr 15
allele count: 2
allele frequency: 1.881715371732872e-5
allele num: 106286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1237+20T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1198+20T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-153T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4041+20T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1198+20T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1662+20T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1198+20T>C
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23522
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10232
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-93489117-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489117
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489117
    reference: chr 15
allele count: 1
allele frequency: 9.432538484757017e-6
allele num: 106016
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1198+22T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1198+22T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1662+22T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1237+22T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-151T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4041+22T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1198+22T>C
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4620
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

15-93489117-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489117
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489117
    reference: chr 15
allele count: 1
allele frequency: 9.432538484757017e-6
allele num: 106016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1198+22T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-151T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4041+22T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1198+22T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1662+22T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1237+22T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1198+22T>G
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4620
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

15-93489120-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489120
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489120
    reference: chr 15
allele count: 1
allele frequency: 9.442335656147905e-6
allele num: 105906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1237+25A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-148A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4041+25A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1198+25A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1662+25A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1198+25A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1198+25A>G
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3822
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

15-93489124-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489124
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489124
    reference: chr 15
allele count: 1
allele frequency: 9.471311397776135e-6
allele num: 105582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1662+29T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4041+29T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1198+29T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1237+29T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1198+29T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-144T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1198+29T>C
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4380
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5397
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-93489130-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489130
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489130
    reference: chr 15
allele count: 1
allele frequency: 9.537070593396533e-6
allele num: 104854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4041+35A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1237+35A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1662+35A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1198+35A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1198+35A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-138A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1198+35A>G
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5958
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4400
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3038
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-93489132-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489132
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489132
    reference: chr 15
allele count: 1
allele frequency: 9.518914082281493e-6
allele num: 105054
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4041+37A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1662+37A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1237+37A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1198+37A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1198+37A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-136A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1198+37A>G
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4402
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5402
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

15-93489139-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489139
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489139
    reference: chr 15
allele count: 1
allele frequency: 9.557305604404006e-6
allele num: 104632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1198+44A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4041+44A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1198+44A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1237+44A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1662+44A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-129A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1198+44A>G
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16565
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2720
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum

15-93489145-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489145
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489145
    reference: chr 15
allele count: 1
allele frequency: 9.617789062650278e-6
allele num: 103974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4041+50G>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1198+50G>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1198+50G>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1198+50G>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1662+50G>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-123G>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1237+50G>T
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11039
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3568
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4402
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3602
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-93489224-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489224
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489224
    reference: chr 15
allele count: 3
allele frequency: 2.641124062400958e-5
allele num: 113588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1663-44T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1199-44T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4042-44T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1238-44T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-44T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1199-44T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1199-44T>C
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5096
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24145
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD

15-93489224-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489224
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489224
    reference: chr 15
allele count: 11
allele frequency: 9.684121562136846e-5
allele num: 113588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1199-44T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1238-44T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1663-44T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4042-44T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1199-44T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-44T>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1199-44T>G
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14380
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/15-93489230-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489230
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489230
    reference: chr 15
allele count: 2
allele frequency: 1.759448237032867e-5
allele num: 113672
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-38A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1199-38A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4042-38A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1663-38A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1199-38A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1199-38A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1238-38A>C
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14981
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28194
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

15-93489234-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489234
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489234
    reference: chr 15
allele count: 1
allele frequency: 8.787037362482866e-6
allele num: 113804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1199-34T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1199-34T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1663-34T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4042-34T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1199-34T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1238-34T>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-34T>C
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5194
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4040
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-93489244-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489244
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489244
    reference: chr 15
allele count: 1
allele frequency: 8.721589422456349e-6
allele num: 114658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-24A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1199-24A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1199-24A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4042-24A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1238-24A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1199-24A>G
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1663-24A>G
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16361
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

15-93489248-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489248
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489249
    reference: chr 15
allele count: 1
allele frequency: 8.740494712000699e-6
allele num: 114410
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4042-12dupT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1199-12dupT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1663-12dupT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-12dupT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1199-12dupT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1238-12dupT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1199-12dupT
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

15-93489248-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489248
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489248
    reference: chr 15
allele count: 1
allele frequency: 8.740494712000699e-6
allele num: 114410
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24861
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6570
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8146
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 866
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 6.667555674089879e-5
  allele num: 14998
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

15-93489248-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489248
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489247
    reference: chr 15
allele count: 14
allele frequency: 1.223669259680098e-4
allele num: 114410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1199-12delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1199-12delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1238-12delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4042-12delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1663-12delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-12delT
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1199-12delT
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24861
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16972
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.75e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: AT
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/15-93489262-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489262
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489262
    reference: chr 15
allele count: 1
allele frequency: 8.451942256330504e-6
allele num: 118316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1238-6A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1663-6A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1199-6A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1199-6A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4042-6A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.231-6A>C
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1199-6A>C
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1199-6A>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum

15-93489277-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489277
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489277
    reference: chr 15
allele count: 1
allele frequency: 8.348499774590506e-6
allele num: 119782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4051G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1208G>A
  hgvsp: ENSP00000451366.1:p.Arg403Gln
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1247G>A
  hgvsp: ENSP00000443618.1:p.Arg416Gln
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1672G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.240G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1208G>A
  hgvsp: ENSP00000406581.2:p.Arg403Gln
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1208G>A
  hgvsp: ENSP00000377747.4:p.Arg403Gln
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg403Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

15-93489283-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489283
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489283
    reference: chr 15
allele count: 18
allele frequency: 1.499725050407425e-4
allele num: 120022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1253C>T
  hgvsp: ENSP00000443618.1:p.Pro418Leu
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1214C>T
  hgvsp: ENSP00000406581.2:p.Pro405Leu
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1214C>T
  hgvsp: ENSP00000451366.1:p.Pro405Leu
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.246C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4057C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1678C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1214C>T
  hgvsp: ENSP00000377747.4:p.Pro405Leu
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30309
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19081
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3315
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro405Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

15-93489284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489284
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489284
    reference: chr 15
allele count: 11
allele frequency: 9.159034138218151e-5
allele num: 120100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1215G>A
  hgvsp: ENST00000557381.1:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4058G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1215G>A
  hgvsp: ENST00000420239.2:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1254G>A
  hgvsp: ENST00000536619.1:c.1254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1215G>A
  hgvsp: ENST00000394196.4:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1679G>A
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.247G>A
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3309
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro405Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

15-93489286-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 93489286
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 93489286
    reference: chr 15
allele count: 1
allele frequency: 8.31849867735871e-6
allele num: 120214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000406581
  ensembl transcript: ENST00000420239
  gene symbol: CHD2
  hgvsc: ENST00000420239.2:c.1217C>T
  hgvsp: ENSP00000406581.2:p.Ala406Val
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000309818
  gene symbol: CHD2
  hgvsc: ENST00000309818.5:n.1681C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000556930
  gene symbol: CHD2
  hgvsc: ENST00000556930.1:n.4060C>T
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000443618
  ensembl transcript: ENST00000536619
  gene symbol: CHD2
  hgvsc: ENST00000536619.1:c.1256C>T
  hgvsp: ENSP00000443618.1:p.Ala419Val
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000377747
  ensembl transcript: ENST00000394196
  gene symbol: CHD2
  hgvsc: ENST00000394196.4:c.1217C>T
  hgvsp: ENSP00000377747.4:p.Ala406Val
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173575
  ensembl protein: ENSP00000451366
  ensembl transcript: ENST00000557381
  gene symbol: CHD2
  hgvsc: ENST00000557381.1:c.1217C>T
  hgvsp: ENSP00000451366.1:p.Ala406Val
  variant of: http://identifiers.org/hgnc/1917
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173575
  ensembl transcript: ENST00000555753
  gene symbol: CHD2
  hgvsc: ENST00000555753.1:n.249C>T
  variant of: http://identifiers.org/hgnc/1917
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala406Val
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2545
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2719
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12719
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28767
bin: 9.75e1
variant carriers: 6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 6
allele frequency: 6.938020351526364e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.808223e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.35e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.979e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.797126e6

BaseQRankSum
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SIO_000300: -2.564e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.665e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507159005275056e-5
allele num: 66350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 6.297e0

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.49e-1

DP
type: SiteQuality
SIO_000300: 2.794918e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.074e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.714396735962696e-4
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017774692941425e-5
allele num: 66274
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.4e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

DP
type: SiteQuality
SIO_000300: 2.792389e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508932882665379e-5
allele num: 66272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

DP
type: SiteQuality
SIO_000300: 2.791696e6

MQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

FS
type: SiteQuality
SIO_000300: 1.664e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.221e0

VQSLOD
type: SiteQuality
SIO_000300: 4.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.043e0

QD
type: SiteQuality
SIO_000300: 1.397e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 166
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
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East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.139e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.34e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.179e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.96e-1

QD
type: SiteQuality
SIO_000300: 2.124e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

DP
type: SiteQuality
SIO_000300: 2.78763e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.72951936174353e-5
allele num: 10278
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.785762e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.772e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66124
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11560
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East Asian
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.784182e6

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.632e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.916e1

BaseQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66100
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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East Asian
type: Population
allele count: 0
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Latino
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allele count: 0
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South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
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African
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BaseQRankSum
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

FS
type: SiteQuality
SIO_000300: 1.181e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

African
type: Population
allele count: 1
allele frequency: 9.75609756097561e-5
allele num: 10250
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.02571860816944e-5
allele num: 66100
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.625e0

FS
type: SiteQuality
SIO_000300: 1.181e1

DP
type: SiteQuality
SIO_000300: 2.784328e6

MQ
type: SiteQuality
SIO_000300: 5.892e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

QD
type: SiteQuality
SIO_000300: 3.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.648e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

DP
type: SiteQuality
SIO_000300: 2.783313e6

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511441613010489e-5
allele num: 66162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.913e1

QD
type: SiteQuality
SIO_000300: 1.753e1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
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SIO_000300: -5.982e0

VQSLOD
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SIO_000300: -1.417e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

DP
type: SiteQuality
SIO_000300: 2.787058e6

FS
type: SiteQuality
SIO_000300: 8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.312e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507840772014475e-5
allele num: 66320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.05e-1

FS
type: SiteQuality
SIO_000300: 3.819e0

DP
type: SiteQuality
SIO_000300: 2.793792e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.391e0

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.456e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.521613311629589e-5
allele num: 66348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

FS
type: SiteQuality
SIO_000300: 5.92e-1

QD
type: SiteQuality
SIO_000300: 1.541e1

DP
type: SiteQuality
SIO_000300: 2.794537e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.307e0

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50665943470138e-5
allele num: 66372
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.94e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
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Other
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allele num: 904
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

InbreedingCoeff
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MQ
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VQSLOD
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DP
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

African
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allele count: 0
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Other
type: Population
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Latino
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East Asian
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allele num: 8638
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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ClippingRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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European (Finnish)
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Other
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East Asian
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African
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Latino
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European (Non-Finnish)
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allele frequency: 1.503262078710802e-5
allele num: 66522
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MQ
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

Other
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European (Non-Finnish)
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East Asian
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African
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allele frequency: 6.747638326585695e-4
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e0

VQSLOD
type: SiteQuality
SIO_000300: 4.88e0

DP
type: SiteQuality
SIO_000300: 2.79946e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.244e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e-1

GenotypeQuality
all individuals: 191
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28726
bin: 9.75e1
variant carriers: 35

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13016
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201742526663662e-4
allele num: 66570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.382886776145203e-3
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.844961240310077e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.891844997108155e-4
allele num: 10374
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.164e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.802792e6

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 28726
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 191
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 13016
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 4961
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004356316659156e-5
allele num: 66570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 1.213e1

DP
type: SiteQuality
SIO_000300: 2.802792e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.164e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

GenotypeQuality
all individuals: 191
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
all individuals: 907
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variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
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variant carriers: 0

GenotypeQuality
all individuals: 5464
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variant carriers: 0

GenotypeQuality
all individuals: 3684
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 899
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.511264487563485e-5
allele num: 15358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.556696e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

VQSLOD
type: SiteQuality
SIO_000300: -2.692e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.287e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 4.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.38e-1

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3683
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 602
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variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.495193556767992e-5
allele num: 15396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.52e0

VQSLOD
type: SiteQuality
SIO_000300: -3.134e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.594e0

DP
type: SiteQuality
SIO_000300: 1.554896e6

MQRankSum
type: SiteQuality
SIO_000300: -1.26e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
all individuals: 5418
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3683
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28547
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.206854936036688e-4
allele num: 8286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15380
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.198e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.161e0

QD
type: SiteQuality
SIO_000300: 1.368e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e0

VQSLOD
type: SiteQuality
SIO_000300: -6.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.71e-1

DP
type: SiteQuality
SIO_000300: 1.546368e6

GenotypeQuality
all individuals: 2801
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5258
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variant carriers: 0

GenotypeQuality
all individuals: 596
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variant carriers: 0

GenotypeQuality
all individuals: 1596
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variant carriers: 0

GenotypeQuality
all individuals: 26916
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variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 617
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variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559138108453647e-5
allele num: 64138
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.527258e6

QD
type: SiteQuality
SIO_000300: 1.466e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 3.233e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

VQSLOD
type: SiteQuality
SIO_000300: -1.774e-1

GenotypeQuality
all individuals: 571
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7929
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27401
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
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variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.209482341557813e-4
allele num: 8268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.58e0

QD
type: SiteQuality
SIO_000300: 1.437e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.527053e6

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.595e0

GenotypeQuality
all individuals: 589
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
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GenotypeQuality
all individuals: 136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4786
bin: 6.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 23713
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.569908003391001e-5
allele num: 63698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15214
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.43e0

QD
type: SiteQuality
SIO_000300: 1.486e1

DP
type: SiteQuality
SIO_000300: 1.482986e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
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variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63504
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.8828125e-4
allele num: 8192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15114
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.454878e6

VQSLOD
type: SiteQuality
SIO_000300: 6.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.537e1

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

GenotypeQuality
all individuals: 13020
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 4964
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variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66572
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.157943492357573e-4
allele num: 8636
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QD
type: SiteQuality
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DP
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 1.0e-4

MQRankSum
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SIO_000300: -1.02e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele num: 16512
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 21
allele frequency: 3.154100330429559e-4
allele num: 66580
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Latino
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allele frequency: 0.0e0
allele num: 11570
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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African
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allele frequency: 2.89073039121218e-4
allele num: 10378
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ClippingRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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VQSLOD
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FS
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BaseQRankSum
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SIO_000300: -1.611e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.926782273603083e-4
allele num: 10380
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East Asian
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allele frequency: 1.041666666666667e-3
allele num: 8640
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Other
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allele num: 904
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66570
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: -2.0e-4

ClippingRankSum
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SIO_000300: -4.77e-1

BaseQRankSum
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DP
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SIO_000300: 2.799125e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9862
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63090
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Latino
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allele num: 11022
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East Asian
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allele count: 1
allele frequency: 1.230920728705071e-4
allele num: 8124
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6472
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South Asian
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Other
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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ClippingRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.05e-1

QD
type: SiteQuality
SIO_000300: 1.703e1

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

DP
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SIO_000300: 1.420761e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.106e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 10988
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62854
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European (Finnish)
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allele count: 0
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East Asian
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allele frequency: 1.241619071268935e-4
allele num: 8054
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
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South Asian
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.616e1

MQRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.46e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.624e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.598823266076168e-5
allele num: 62546
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7962
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6470
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Other
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allele frequency: 0.0e0
allele num: 860
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South Asian
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MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
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DP
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BaseQRankSum
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MQ
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.67e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 1.377031120903333e-4
allele num: 7262
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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DP
type: SiteQuality
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QD
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
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East Asian
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Latino
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European (Non-Finnish)
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allele frequency: 4.564959371861591e-5
allele num: 43812
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African
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South Asian
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allele frequency: 8.862629246676514e-4
allele num: 13540
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Other
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQ
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DP
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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African
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East Asian
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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MQ
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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MQ
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ReadPosRankSum
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DP
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MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 1.059e0

QD
type: SiteQuality
SIO_000300: 9.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.852e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

GenotypeQuality
all individuals: 13125
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46804
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.355380862022228e-4
allele num: 7378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14154
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

QD
type: SiteQuality
SIO_000300: 1.372e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.328944e6

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 2.701e0

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3540
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4401
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2769
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.421523448088912e-4
allele num: 7378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.372e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 2.701e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 1.328944e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

GenotypeQuality
all individuals: 152
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4398
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 281
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.261352169525732e-4
allele num: 7928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.254e1

VQSLOD
type: SiteQuality
SIO_000300: -3.063e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.403193e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2862
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.877471888328809e-5
allele num: 51580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 4.604e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 1.225e1

MQ
type: SiteQuality
SIO_000300: 5.878e1

DP
type: SiteQuality
SIO_000300: 1.441164e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
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variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4404
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 8
allele frequency: 5.390835579514825e-4
allele num: 14840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51992
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.439e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.360000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

DP
type: SiteQuality
SIO_000300: 1.446448e6

QD
type: SiteQuality
SIO_000300: 1.108e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

GenotypeQuality
all individuals: 1048
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
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variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4402
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 141
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 3000
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
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GenotypeQuality
all individuals: 917
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36948
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.577244841048522e-5
allele num: 53790
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
SIO_000300: 1.274e1

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.475481e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
all individuals: 559
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
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GenotypeQuality
all individuals: 37893
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 910
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 282
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variant carriers: 0

GenotypeQuality
all individuals: 4399
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.821427270409093e-5
allele num: 54902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.79e-1

DP
type: SiteQuality
SIO_000300: 1.492464e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 9.85e0

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.372e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 7.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.63e-1

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4400
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 777
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.507951356407858e-4
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10788
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.685e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 5.782e1

QD
type: SiteQuality
SIO_000300: 1.052e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.510729e6

FS
type: SiteQuality
SIO_000300: 2.648e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56526
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.813517385076181e-4
allele num: 15358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

FS
type: SiteQuality
SIO_000300: 1.789e0

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 1.511544e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39145
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GenotypeQuality
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GenotypeQuality
all individuals: 425
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GenotypeQuality
all individuals: 926
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.761493746697199e-5
allele num: 56770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15380
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.514201e6

FS
type: SiteQuality
SIO_000300: 1.422e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.838e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

VQSLOD
type: SiteQuality
SIO_000300: -5.228e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 1.214e1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.750700280112045e-5
allele num: 57120
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8674
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15404
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 8.311784263021796e-4
allele num: 10828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

FS
type: SiteQuality
SIO_000300: 3.268e0

DP
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QD
type: SiteQuality
SIO_000300: 1.092e1

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.223091976516634e-4
allele num: 8176
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15296
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.767159115006715e-5
allele num: 56588
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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SIO_000300: 1.43114e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 1.603e1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.541452703899139e-5
allele num: 56474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10798
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.87e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.072e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 1.41803e6

FS
type: SiteQuality
SIO_000300: 4.166e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

QD
type: SiteQuality
SIO_000300: 1.228e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56294
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.268e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

QD
type: SiteQuality
SIO_000300: 1.423e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.404012e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56294
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.404012e6

FS
type: SiteQuality
SIO_000300: 1.268e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 56222
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.57116572479958e-5
allele num: 15218
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.98e-1

MQRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.393222e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.785714285714286e-5
allele num: 56000
num of homozygotes: 0

QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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BaseQRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Latino
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South Asian
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.800958109714368e-5
allele num: 55526
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.855e1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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FS
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55668
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6094
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South Asian
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allele frequency: 6.619009796134498e-5
allele num: 15108
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
SIO_000300: 1.35793e6

GenotypeQuality
all individuals: 14197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5795
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4402
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1781
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.305788200260562e-5
allele num: 10746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 6.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.728e0

DP
type: SiteQuality
SIO_000300: 1.348507e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
all individuals: 740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5858
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4601
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2239
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.33009889904833e-5
allele num: 10718
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

QD
type: SiteQuality
SIO_000300: 1.396e1

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.58e-1

FS
type: SiteQuality
SIO_000300: 2.316e0

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

DP
type: SiteQuality
SIO_000300: 1.351881e6

GenotypeQuality
all individuals: 3468
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3501
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.600256040966555e-5
allele num: 62490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.164970772894566e-4
allele num: 9238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7948
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

DP
type: SiteQuality
SIO_000300: 1.44227e6

VQSLOD
type: SiteQuality
SIO_000300: 9.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 1.642e0

QD
type: SiteQuality
SIO_000300: 1.458e1

GenotypeQuality
all individuals: 5096
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3850
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24145
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3313
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1901
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3468
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.76028164506321e-4
allele num: 62490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

QD
type: SiteQuality
SIO_000300: 1.458e1

FS
type: SiteQuality
SIO_000300: 1.642e0

MQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.44227e6

GenotypeQuality
all individuals: 1935
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3300
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.197135366711427e-5
allele num: 62556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.46558e6

QD
type: SiteQuality
SIO_000300: 1.368e1

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2752
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.782715615668365e-5
allele num: 11386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 1.482423e6

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.67e-2

QD
type: SiteQuality
SIO_000300: 1.711e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

GenotypeQuality
all individuals: 440
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35577
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3298
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.536802196365538e-5
allele num: 15298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.526545e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

FS
type: SiteQuality
SIO_000300: 9.151e0

MQRankSum
type: SiteQuality
SIO_000300: -3.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.919e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e-1

QD
type: SiteQuality
SIO_000300: 1.62e1

GenotypeQuality
all individuals: 257
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.667555674089879e-5
allele num: 14998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 7.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

DP
type: SiteQuality
SIO_000300: 1.556523e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63180
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

DP
type: SiteQuality
SIO_000300: 1.556523e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

QD
type: SiteQuality
SIO_000300: 7.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
all individuals: 571
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 689
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 305
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35666
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.898894154818325e-4
allele num: 11394
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.667555674089879e-5
allele num: 14998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.331117442228554e-5
allele num: 63180
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.49e0

DP
type: SiteQuality
SIO_000300: 1.556523e6

GenotypeQuality
all individuals: 1604
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3295
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531581204435459e-5
allele num: 65292
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.239e0

FS
type: SiteQuality
SIO_000300: 3.551e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.911e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

DP
type: SiteQuality
SIO_000300: 1.60717e6

QD
type: SiteQuality
SIO_000300: 1.705e1

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

GenotypeQuality
all individuals: 6076
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516208266367468e-5
allele num: 65954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.356e0

VQSLOD
type: SiteQuality
SIO_000300: -4.696e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.793e0

FS
type: SiteQuality
SIO_000300: 5.063e0

DP
type: SiteQuality
SIO_000300: 1.635263e6

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 44404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6091
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.601005722212589e-4
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.09846215298582e-3
allele num: 10014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66024
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.838010047788261e-4
allele num: 16322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.337e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.63909e6

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

GenotypeQuality
all individuals: 6108
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223990208078335e-4
allele num: 16340
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.601005722212589e-4
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.80046403712297e-4
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514050387596899e-5
allele num: 66048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 1.63936e6

FS
type: SiteQuality
SIO_000300: 6.69e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0