13-78273044-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273044
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273044
    reference: chr 13
allele count: 11
allele frequency: 9.083402146985962e-4
allele num: 12110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+370G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+981G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+370G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+370G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.-15G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-307G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+370G>C
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

13-78273045-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273045
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273045
    reference: chr 13
allele count: 11
allele frequency: 9.090909090909091e-4
allele num: 12100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+982A>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+371A>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+371A>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-306A>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+371A>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.-14A>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+371A>T
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

13-78273048-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273048
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273048
    reference: chr 13
allele count: 1
allele frequency: 8.237232289950576e-5
allele num: 12140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+985G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.-11G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+374G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+374G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-303G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+374G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+374G>C
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

13-78273053-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273053
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273053
    reference: chr 13
allele count: 1
allele frequency: 8.229098090849243e-5
allele num: 12152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+379C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+379C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-298C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+379C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+379C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+990C>T
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

13-78273056-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273056
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273056
    reference: chr 13
allele count: 178
allele frequency: 1.458299197116172e-2
allele num: 12206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+382G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.-3G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-295G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+382G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+382G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+993G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+382G>A
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4267
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 4
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

13-78273063-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273063
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273063
    reference: chr 13
allele count: 1
allele frequency: 8.172605426610003e-5
allele num: 12236
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.5T>G
  hgvsp: ENSP00000418707.1:p.Val2Gly
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+389T>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+389T>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-288T>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1000T>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+389T>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+389T>G
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val2Gly
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

13-78273070-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273070
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273070
    reference: chr 13
allele count: 1
allele frequency: 8.147303242626691e-5
allele num: 12274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+396T>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-281T>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.12T>C
  hgvsp: ENST00000488699.1:c.12T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+396T>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+396T>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+396T>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1007T>C
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val4Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

13-78273094-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273094
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273094
    reference: chr 13
allele count: 4
allele frequency: 3.246226261970459e-4
allele num: 12322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+420G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.36G>A
  hgvsp: ENST00000488699.1:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1031G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+420G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+420G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-257G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+420G>A
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu12Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

13-78273123-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273123
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273123
    reference: chr 13
allele count: 4
allele frequency: 3.243593902043464e-4
allele num: 12332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+449G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.65G>A
  hgvsp: ENSP00000418707.1:p.Arg22Lys
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-228G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+449G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+449G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+449G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1060G>A
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg22Lys
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

13-78273134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273134
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273134
    reference: chr 13
allele count: 2
allele frequency: 1.621796951021732e-4
allele num: 12332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+460C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+460C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-217C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.76C>T
  hgvsp: ENSP00000418707.1:p.Leu26Phe
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+460C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1071C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+460C>T
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4640
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu26Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

13-78273148-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273148
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273148
    reference: chr 13
allele count: 2
allele frequency: 1.622586402725945e-4
allele num: 12326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+474G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.90G>A
  hgvsp: ENST00000488699.1:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-203G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+474G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+474G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+474G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1085G>A
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly30Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/13-78273155-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273155
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273155
    reference: chr 13
allele count: 1
allele frequency: 8.119519324455992e-5
allele num: 12316
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.97C>A
  hgvsp: ENST00000488699.1:c.97C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1092C>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+481C>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+481C>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+481C>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+481C>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-196C>A
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4633
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg33Arg
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

13-78273156-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273156
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273156
    reference: chr 13
allele count: 1
allele frequency: 8.119519324455992e-5
allele num: 12316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1093G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+482G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.98G>C
  hgvsp: ENSP00000418707.1:p.Arg33Pro
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-195G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+482G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+482G>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+482G>C
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4638
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg33Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

13-78273174-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273174
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273174
    reference: chr 13
allele count: 8
allele frequency: 6.510416666666666e-4
allele num: 12288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1111G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-177G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+500G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+500G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+500G>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.116G>A
  hgvsp: ENSP00000418707.1:p.Gly39Glu
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+500G>A
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly39Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

13-78273182-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273182
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273182
    reference: chr 13
allele count: 1
allele frequency: 8.152616990053807e-5
allele num: 12266
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.124T>A
  hgvsp: ENSP00000418707.1:p.Phe42Ile
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+508T>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+508T>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-169T>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+508T>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+508T>A
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1119T>A
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe42Ile
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

13-78273183-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273183
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273183
    reference: chr 13
allele count: 1
allele frequency: 8.152616990053807e-5
allele num: 12266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-168T>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+509T>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+509T>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1120T>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+509T>C
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.125T>C
  hgvsp: ENSP00000418707.1:p.Phe42Ser
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+509T>C
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe42Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

13-78273204-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273204
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273204
    reference: chr 13
allele count: 65
allele frequency: 5.341880341880342e-3
allele num: 12168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+530C>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+530C>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1141C>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-147C>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+530C>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+530C>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.134+12C>G
  variant of: http://identifiers.org/hgnc/26387
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

13-78273208-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273208
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273208
    reference: chr 13
allele count: 4
allele frequency: 3.287310979618672e-4
allele num: 12168
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.134+16T>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1145T>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+534T>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+534T>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+534T>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-143T>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+534T>G
  variant of: http://identifiers.org/hgnc/26387
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

13-78273237-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78273237
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78273236
    reference: chr 13
allele count: 1
allele frequency: 8.364001338240214e-5
allele num: 11956
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.134+47delT
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-98+565delT
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-98+565delT
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.560+565delT
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.-112delT
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-98+1176delT
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-98+565delT
  variant of: http://identifiers.org/hgnc/26387
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: GT
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

13-78293618-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78293618
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78293618
    reference: chr 13
allele count: 11
allele frequency: 1.325940212150434e-4
allele num: 82960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-97-49C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-97-49C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-97-49C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.9-49C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.135-49C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.561-49C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-97-49C>T
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15197
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18905
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11067
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9889
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8274
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

13-78293620-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78293620
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78293620
    reference: chr 13
allele count: 1128
allele frequency: 1.35867601358676e-2
allele num: 83022
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.135-47C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-97-47C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-97-47C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.561-47C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-97-47C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-97-47C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.9-47C>T
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 2.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 15170
  bin: 7.5e0
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 1.75e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 18908
  bin: 1.25e1
  variant carriers: 485
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 2.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 4906
  bin: 2.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6698
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 9.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 10144
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 8066
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4283
  bin: 4.75e1
  variant carriers: 4
num of homozygotes: 15
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-62559967-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62559967
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62559967
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.856A>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.355A>C
  hgvsp: ENSP00000434301.1:p.Glu119Ala
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2571A>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1841A>C
  hgvsp: ENSP00000294172.2:p.Glu614Ala
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.452A>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.780A>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1841A>C
  hgvsp: ENSP00000436679.1:p.Glu614Ala
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40036
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu614Ala
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

11-62559977-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62559977
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62559977
    reference: chr 11
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1831G>A
  hgvsp: ENSP00000294172.2:p.Glu611Lys
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2561G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1831G>A
  hgvsp: ENSP00000436679.1:p.Glu611Lys
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.345G>A
  hgvsp: ENSP00000434301.1:p.Glu116Lys
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.770G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.442G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.846G>A
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40037
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu611Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-62559978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62559978
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62559978
    reference: chr 11
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.845C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2560C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.344C>T
  hgvsp: ENST00000527902.1:c.344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1830C>T
  hgvsp: ENST00000294172.2:c.1830C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.769C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1830C>T
  hgvsp: ENST00000532297.1:c.1830C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.441C>T
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40036
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly610Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

11-62559990-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62559990
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62559990
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-4C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-4C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-4C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-4C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-4C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.833C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-4C>A
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40035
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58847
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1822-4C>A
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

11-62559995-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62559995
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62559995
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-9T>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.828T>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-9T>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-9T>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-9T>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-9T>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-9T>C
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40035
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58847
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS

11-62559999-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62559999
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62559999
    reference: chr 11
allele count: 70
allele frequency: 5.765587678115477e-4
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-13C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-13C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-13C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.824C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-13C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-13C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-13C>A
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40039
  bin: 9.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58848
  bin: 9.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

11-62560014-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560014
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560014
    reference: chr 11
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-28A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-28A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-28A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-28A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.809A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-28A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-28A>G
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40033
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

11-62560016-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560016
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560016
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-30C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-30C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-30C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-30C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.807C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-30C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-30C>G
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40033
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

13-78293632-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78293632
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78293632
    reference: chr 13
allele count: 4
allele frequency: 4.719541260589471e-5
allele num: 84754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-97-35A>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.9-35A>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-97-35A>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-97-35A>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-97-35A>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.561-35A>G
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.135-35A>G
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13178
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17035
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4929
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7710
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

13-78293640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 78293640
    reference: chr 13
  end: Position
    type: ExactPosition
    position: 78293640
    reference: chr 13
allele count: 0
allele frequency: 0.0e0
allele num: 87456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000400921
  ensembl transcript: ENST00000418532
  gene symbol: SLAIN1
  hgvsc: ENST00000418532.1:c.-97-27C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000419730
  ensembl transcript: ENST00000466548
  gene symbol: SLAIN1
  hgvsc: ENST00000466548.1:c.561-27C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000418707
  ensembl transcript: ENST00000488699
  gene symbol: SLAIN1
  hgvsc: ENST00000488699.1:c.135-27C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000366444
  ensembl transcript: ENST00000377236
  gene symbol: SLAIN1
  hgvsc: ENST00000377236.2:c.9-27C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000403049
  ensembl transcript: ENST00000446759
  gene symbol: SLAIN1
  hgvsc: ENST00000446759.1:c.-97-27C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000389195
  ensembl transcript: ENST00000422114
  gene symbol: SLAIN1
  hgvsc: ENST00000422114.1:c.-97-27C>T
  variant of: http://identifiers.org/hgnc/26387
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139737
  ensembl protein: ENSP00000393990
  ensembl transcript: ENST00000442759
  gene symbol: SLAIN1
  hgvsc: ENST00000442759.1:c.-97-27C>T
  variant of: http://identifiers.org/hgnc/26387
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15087
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19435
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14511
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5714
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3999
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

11-62560016-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560016
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560016
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-30C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.807C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-30C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-30C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-30C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-30C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-30C>T
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40033
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-62560020-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560020
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560020
    reference: chr 11
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.803A>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-34A>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-34A>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-34A>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-34A>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-34A>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-34A>T
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40033
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-62560022-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560022
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560022
    reference: chr 11
allele count: 33
allele frequency: 2.718062762540153e-4
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-36G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-36G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-36G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-36G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-36G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.801G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-36G>T
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40035
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58848
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

11-62560022-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560022
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560022
    reference: chr 11
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-36G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-36G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-36G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.801G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-36G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-36G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-36G>A
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40035
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

11-62560027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560027
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560027
    reference: chr 11
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-41C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-41C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.796C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-41C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-41C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-41C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-41C>T
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

11-62560027-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560027
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560027
    reference: chr 11
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-41C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-41C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-41C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-41C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.796C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-41C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-41C>G
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

11-62560027-GCCACTCAGCAACC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560027
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560014
    reference: chr 11
allele count: 53
allele frequency: 4.365373527716004e-4
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 40025
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58854
  bin: 9.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: GCCACTCAGCAACC
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

11-62560036-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560036
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560036
    reference: chr 11
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2552-50G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.787G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.336-50G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1822-50G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1822-50G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.433-50G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.761-50G>C
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40012
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

11-62560067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560067
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560067
    reference: chr 11
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.756C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.432+46C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.760+46C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.335+46C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1821+46C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1821+46C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2551+46C>T
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45160
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

11-62560094-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560094
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560092
    reference: chr 11
allele count: 7
allele frequency: 5.765967611736215e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.432+17_432+18delCA
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.335+17_335+18delCA
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.727_728delCA
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2551+17_*2551+18delCA
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.760+17_760+18delCA
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1821+17_1821+18delCA
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1821+17_1821+18delCA
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: CTG
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

11-62560096-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560096
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560096
    reference: chr 11
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.432+17C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2551+17C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.335+17C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.727C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1821+17C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.760+17C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1821+17C>T
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

11-62560099-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560099
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560099
    reference: chr 11
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.760+14A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.432+14A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1821+14A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.335+14A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2551+14A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1821+14A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.724A>G
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45306
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

11-62560102-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560102
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560102
    reference: chr 11
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.335+11G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.432+11G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.721G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.760+11G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1821+11G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2551+11G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1821+11G>C
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

11-62560103-C-CAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560103
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560105
    reference: chr 11
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: CAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.718_719dupCT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.432+8_432+9dupCT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1821+8_1821+9dupCT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.335+8_335+9dupCT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.760+8_760+9dupCT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1821+8_1821+9dupCT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2551+8_*2551+9dupCT
  variant of: http://identifiers.org/hgnc/8071
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

11-62560108-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560108
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560108
    reference: chr 11
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1821+5G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.335+5G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.760+5G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1821+5G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.432+5G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2551+5G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.715G>A
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1821+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

11-62560133-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560133
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560133
    reference: chr 11
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1801C>G
  hgvsp: ENSP00000436679.1:p.Gln601Glu
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.315C>G
  hgvsp: ENSP00000434301.1:p.Gln106Glu
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.740C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2531C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1801C>G
  hgvsp: ENSP00000294172.2:p.Gln601Glu
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.690C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.412C>G
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45379
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln601Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

11-62560146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560146
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560146
    reference: chr 11
allele count: 12
allele frequency: 9.885330170027679e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.302C>T
  hgvsp: ENST00000527902.1:c.302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.727C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.677C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2518C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1788C>T
  hgvsp: ENST00000294172.2:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1788C>T
  hgvsp: ENST00000532297.1:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.399C>T
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45385
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr596Tyr
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

11-62560159-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560159
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560159
    reference: chr 11
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.289A>G
  hgvsp: ENSP00000434301.1:p.Asn97Ser
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1775A>G
  hgvsp: ENSP00000436679.1:p.Asn592Ser
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.714A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1775A>G
  hgvsp: ENSP00000294172.2:p.Asn592Ser
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2505A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.664A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.386A>G
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn592Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

11-62560173-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560173
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560173
    reference: chr 11
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761G>C
  hgvsp: ENSP00000436679.1:p.Lys587Asn
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275G>C
  hgvsp: ENSP00000434301.1:p.Lys92Asn
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761G>C
  hgvsp: ENSP00000294172.2:p.Lys587Asn
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491G>C
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys587Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

11-62560176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560176
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560176
    reference: chr 11
allele count: 2
allele frequency: 1.648261084555794e-5
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-3C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-3C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-3C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-3C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-3C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-3C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-3C>T
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1761-3C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-62560177-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560177
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560177
    reference: chr 11
allele count: 3
allele frequency: 2.47239162683369e-5
allele num: 121340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-4C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-4C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-4C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-4C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-4C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-4C>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-4C>G
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 9.75e1
  variant carriers: 3
hgvs: c.1761-4C>G
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

11-62560177-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560177
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560177
    reference: chr 11
allele count: 5
allele frequency: 4.120652711389484e-5
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-4C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-4C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-4C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-4C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-4C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-4C>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-4C>A
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12830
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1761-4C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

11-62560191-GCAGCTCTGTAAGAACTCTGACTCGTAAATGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560191
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560160
    reference: chr 11
allele count: 2
allele frequency: 1.651036851142517e-5
allele num: 121136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: GCAGCTCTGTAAGAACTCTGACTCGTAAATGC
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/11-62560206-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560206
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560206
    reference: chr 11
allele count: 3
allele frequency: 2.495425054067543e-5
allele num: 120220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-33G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-33G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-33G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-33G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-33G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-33G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-33G>T
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

11-62560214-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560214
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560214
    reference: chr 11
allele count: 1
allele frequency: 8.404067568703253e-6
allele num: 118990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-41G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-41G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-41G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-41G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-41G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-41G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-41G>C
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

11-62560214-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560214
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560214
    reference: chr 11
allele count: 1
allele frequency: 8.404067568703253e-6
allele num: 118990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-41G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-41G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-41G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-41G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-41G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-41G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-41G>A
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

11-62560215-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560215
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560215
    reference: chr 11
allele count: 9
allele frequency: 7.598784194528876e-5
allele num: 118440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-42C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-42C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-42C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-42C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-42C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-42C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-42C>T
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11272
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

11-62560216-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560216
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560216
    reference: chr 11
allele count: 4
allele frequency: 3.376268210746662e-5
allele num: 118474
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-43A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-43A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-43A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-43A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-43A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-43A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-43A>G
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30641
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11186
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7085
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

11-62560216-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560216
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560215
    reference: chr 11
allele count: 1
allele frequency: 8.440670526866655e-6
allele num: 118474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-44delT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-44delT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-44delT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-44delT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-44delT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-44delT
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-44delT
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30641
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: TA
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-62560222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560222
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560222
    reference: chr 11
allele count: 1
allele frequency: 8.601262665359275e-6
allele num: 116262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-49G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-49G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-49G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-49G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-49G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-49G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-49G>A
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6587
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/11-62560224-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560224
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560224
    reference: chr 11
allele count: 2
allele frequency: 1.729984084146426e-5
allele num: 115608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-51T>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-51T>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-51T>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-51T>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-51T>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-51T>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-51T>G
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28006
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6132
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

11-62560232-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560232
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560232
    reference: chr 11
allele count: 5
allele frequency: 4.479805038884708e-5
allele num: 111612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-59C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-59C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-59C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-59C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-59C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-59C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-59C>T
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9898
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7866
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

11-62560236-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560236
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560236
    reference: chr 11
allele count: 1
allele frequency: 9.222539887485013e-6
allele num: 108430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-63T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-63T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-63T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-63T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-63T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-63T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-63T>A
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9032
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14011
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28629
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

11-62560247-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560247
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560247
    reference: chr 11
allele count: 1
allele frequency: 9.830715086215372e-6
allele num: 101722
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-74C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-74C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-74C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-74C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-74C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-74C>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-74C>T
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21153
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

11-62560250-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560250
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560250
    reference: chr 11
allele count: 331
allele frequency: 3.391810468500225e-3
allele num: 97588
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-77G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-77G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-77G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-77G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-77G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-77G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-77G>A
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 1.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 2.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11053
  bin: 2.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10466
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19281
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 4
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

11-62560251-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560251
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560251
    reference: chr 11
allele count: 9463
allele frequency: 9.865307228790059e-2
allele num: 95922
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-78G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-78G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-78G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-78G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-78G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-78G>C
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-78G>C
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 3.25e1
  variant carriers: 894
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 1.75e1
  variant carriers: 1939
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 10832
  bin: 7.5e0
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 20151
  bin: 1.25e1
  variant carriers: 987
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 491
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 6367
  bin: 2.25e1
  variant carriers: 2067
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 285
genotype depth: GenotypeDepth
  all individuals: 10043
  bin: 2.75e1
  variant carriers: 1457
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 6.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 1.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 3.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 11332
  bin: 6.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 2.75e1
  variant carriers: 15
num of homozygotes: 534
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

11-62560254-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560254
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560254
    reference: chr 11
allele count: 2
allele frequency: 2.159873863366379e-5
allele num: 92598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-81T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-81T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-81T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-81T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-81T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-81T>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-81T>A
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22609
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

11-62560260-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560260
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560260
    reference: chr 11
allele count: 1
allele frequency: 1.152073732718894e-5
allele num: 86800
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-87G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-87G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-87G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-87G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-87G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-87G>A
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-87G>A
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3646
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4553
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

11-62560270-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560270
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560270
    reference: chr 11
allele count: 1
allele frequency: 1.284719545723169e-5
allele num: 77838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-97A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-97A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-97A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-97A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-97A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-97A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-97A>G
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4950
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

11-62560282-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560282
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560282
    reference: chr 11
allele count: 1
allele frequency: 1.605858170606372e-5
allele num: 62272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-109A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-109A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-109A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-109A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-109A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-109A>G
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-109A>G
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20856
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21268
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3458
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5051
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9901
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4523
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-62560284-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62560284
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62560284
    reference: chr 11
allele count: 2
allele frequency: 3.457575548025724e-5
allele num: 57844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533048
  gene symbol: NXF1
  hgvsc: ENST00000533048.1:n.700-111G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000533499
  gene symbol: NXF1
  hgvsc: ENST00000533499.1:n.650-111G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000453885
  ensembl transcript: ENST00000531709
  gene symbol: NXF1
  hgvsc: ENST00000531709.2:c.*2491-111G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000436679
  ensembl transcript: ENST00000532297
  gene symbol: NXF1
  hgvsc: ENST00000532297.1:c.1761-111G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000294172
  ensembl transcript: ENST00000294172
  gene symbol: NXF1
  hgvsc: ENST00000294172.2:c.1761-111G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl protein: ENSP00000434301
  ensembl transcript: ENST00000527902
  gene symbol: NXF1
  hgvsc: ENST00000527902.1:c.275-111G>T
  variant of: http://identifiers.org/hgnc/8071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162231
  ensembl transcript: ENST00000527497
  gene symbol: NXF1
  hgvsc: ENST00000527497.1:n.372-111G>T
  variant of: http://identifiers.org/hgnc/8071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23021
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19079
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4107
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3564
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 9.900990099009901e-3
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.205787781350482e-3
allele num: 7464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.58095e5

VQSLOD
type: SiteQuality
SIO_000300: -8.978e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.16e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 1.792e0

QD
type: SiteQuality
SIO_000300: 2.086e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 9.75e1
variant carriers: 11

East Asian
type: Population
allele count: 2
allele frequency: 9.900990099009901e-3
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.207405419908774e-3
allele num: 7454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.448e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.07e-2

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.58539e5

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

FS
type: SiteQuality
SIO_000300: 1.8e0

QD
type: SiteQuality
SIO_000300: 2.041e1

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4129
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.773049645390071e-3
allele num: 564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.58541e5

QD
type: SiteQuality
SIO_000300: 9.75e0

FS
type: SiteQuality
SIO_000300: 9.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

VQSLOD
type: SiteQuality
SIO_000300: -3.816e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.78e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.79e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e-1

DP
type: SiteQuality
SIO_000300: 1.60129e5

QD
type: SiteQuality
SIO_000300: 7.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

GenotypeQuality
all individuals: 2145
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 220
bin: 9.75e1
variant carriers: 174

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 44
allele frequency: 1.229050279329609e-2
allele num: 3580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 121
allele frequency: 1.605626326963907e-2
allele num: 7536
num of homozygotes: 4

African
type: Population
allele count: 10
allele frequency: 1.773049645390071e-2
allele num: 564
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.515151515151515e-2
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.138e0

FS
type: SiteQuality
SIO_000300: 7.85e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

DP
type: SiteQuality
SIO_000300: 1.62449e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.78e-2

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4475
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.322401481089659e-4
allele num: 7562
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.279e1

DP
type: SiteQuality
SIO_000300: 1.60844e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.76e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4549
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.317175974710221e-4
allele num: 7592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.365e0

VQSLOD
type: SiteQuality
SIO_000300: -1.272e0

DP
type: SiteQuality
SIO_000300: 1.61318e5

QD
type: SiteQuality
SIO_000300: 1.571e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.65e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.98e-1

GenotypeQuality
all individuals: 101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.253480430785396e-4
allele num: 7614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e-1

FS
type: SiteQuality
SIO_000300: 4.688e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.072e0

QD
type: SiteQuality
SIO_000300: 1.252e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

DP
type: SiteQuality
SIO_000300: 1.62115e5

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.250721974271463e-4
allele num: 7618
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.61609e5

QD
type: SiteQuality
SIO_000300: 1.611e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.04e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.243e-1

FS
type: SiteQuality
SIO_000300: 6.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.317e0

GenotypeQuality
all individuals: 1789
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.625360987135731e-4
allele num: 7618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.492e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.236e-1

DP
type: SiteQuality
SIO_000300: 1.61345e5

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 1.083e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

QD
type: SiteQuality
SIO_000300: 8.16e0

GenotypeQuality
all individuals: 4647
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 2
allele frequency: 2.625360987135731e-4
allele num: 7618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.707e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.504e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 1.61221e5

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -7.179e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 810
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312680493567866e-4
allele num: 7618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.78e0

VQSLOD
type: SiteQuality
SIO_000300: -2.451e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 7.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.81e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.395e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.60741e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.763957987838585e-4
allele num: 3618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e0

DP
type: SiteQuality
SIO_000300: 1.60731e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.366e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.71e-2

FS
type: SiteQuality
SIO_000300: 1.218e0

QD
type: SiteQuality
SIO_000300: 1.334e1

MQ
type: SiteQuality
SIO_000300: 5.918e1

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.692e-1

GenotypeQuality
all individuals: 4605
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 807
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3600
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 3.03030303030303e-2
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.314405888538381e-4
allele num: 7608
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.575757575757576e-3
allele num: 132
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

DP
type: SiteQuality
SIO_000300: 1.60319e5

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.675e0

VQSLOD
type: SiteQuality
SIO_000300: 5.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.37e-1

GenotypeQuality
all individuals: 44
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4575
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.315443304393581e-4
allele num: 7602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.09e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.52e-1

FS
type: SiteQuality
SIO_000300: 1.432e0

VQSLOD
type: SiteQuality
SIO_000300: 4.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.59166e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.92e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.97e-1

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.315443304393581e-4
allele num: 7602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.152e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

QD
type: SiteQuality
SIO_000300: 1.232e1

DP
type: SiteQuality
SIO_000300: 1.59009e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 225
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 65
allele frequency: 8.604712734974847e-3
allele num: 7554
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.499e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.667e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

DP
type: SiteQuality
SIO_000300: 1.56413e5

MQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4187
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.12549240292628e-3
allele num: 3554
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.405e1

VQSLOD
type: SiteQuality
SIO_000300: 3.96e-1

DP
type: SiteQuality
SIO_000300: 1.54272e5

FS
type: SiteQuality
SIO_000300: 6.087e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

GenotypeQuality
all individuals: 177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.345895020188425e-4
allele num: 7430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.47e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

QD
type: SiteQuality
SIO_000300: 4.62e0

DP
type: SiteQuality
SIO_000300: 1.40665e5

GenotypeQuality
all individuals: 4315
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6880
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5025
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.909894969596462e-5
allele num: 43416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 8.787346221441124e-4
allele num: 5690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7246
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.664535038635758e-4
allele num: 7506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.779679477205539e-5
allele num: 12854
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.264e0

FS
type: SiteQuality
SIO_000300: 1.108e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

DP
type: SiteQuality
SIO_000300: 9.72043e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

GenotypeQuality
all individuals: 2169
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 663
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 752
bin: 7.75e1
variant carriers: 25

GenotypeQuality
all individuals: 535
bin: 8.25e1
variant carriers: 27

GenotypeQuality
all individuals: 2924
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 3724
bin: 6.25e1
variant carriers: 19

GenotypeQuality
all individuals: 654
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 4300
bin: 9.75e1
variant carriers: 1135

GenotypeQuality
all individuals: 2466
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 313
bin: 8.75e1
variant carriers: 56

Other
type: Population
allele count: 12
allele frequency: 1.739130434782609e-2
allele num: 690
num of homozygotes: 0

South Asian
type: Population
allele count: 64
allele frequency: 4.955861855350782e-3
allele num: 12914
num of homozygotes: 1

African
type: Population
allele count: 7
allele frequency: 9.625962596259626e-4
allele num: 7272
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 4.383634431455898e-3
allele num: 7528
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.797914419273643e-4
allele num: 5562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 246
allele frequency: 4.330985915492958e-2
allele num: 5680
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 765
allele frequency: 1.763648100331981e-2
allele num: 43376
num of homozygotes: 9

VQSLOD
type: SiteQuality
SIO_000300: 5.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.259e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

DP
type: SiteQuality
SIO_000300: 9.75775e5

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 1.466e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58845
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.93e0

DP
type: SiteQuality
SIO_000300: 6.645558e6

FS
type: SiteQuality
SIO_000300: 1.773e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.77e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.052e0

GenotypeQuality
all individuals: 164
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58846
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 270
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.645499e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

QD
type: SiteQuality
SIO_000300: 5.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.0451e1

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.058e0

VQSLOD
type: SiteQuality
SIO_000300: -3.304e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.89e-1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58846
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

MQRankSum
type: SiteQuality
SIO_000300: 5.93e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 6.645448e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e-1

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.588e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.452e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.249e1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 6.645219e6

GenotypeQuality
all individuals: 337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.645249e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.47e1

VQSLOD
type: SiteQuality
SIO_000300: -1.062e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 7.775e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 66
allele frequency: 6.342494714587738e-3
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

FS
type: SiteQuality
SIO_000300: 6.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

QD
type: SiteQuality
SIO_000300: 1.39e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.986e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

DP
type: SiteQuality
SIO_000300: 6.645464e6

GenotypeQuality
all individuals: 296
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58846
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.641097e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.359e0

VQSLOD
type: SiteQuality
SIO_000300: -1.216e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.193e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

QD
type: SiteQuality
SIO_000300: 1.647e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.57e0

GenotypeQuality
all individuals: 321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58848
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 166
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

FS
type: SiteQuality
SIO_000300: 2.607e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 6.641113e6

QD
type: SiteQuality
SIO_000300: 1.252e1

MQRankSum
type: SiteQuality
SIO_000300: 5.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.389e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 1896
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14317
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11929
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4809
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5585
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1901
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.256419513515953e-5
allele num: 44318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.34517083669626e-4
allele num: 7434
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.519064256418046e-4
allele num: 13166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.041397e6

QD
type: SiteQuality
SIO_000300: 1.589e1

GenotypeQuality
all individuals: 3225
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

QD
type: SiteQuality
SIO_000300: 1.372e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e-1

DP
type: SiteQuality
SIO_000300: 1.131148e6

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58848
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.75e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.389e0

FS
type: SiteQuality
SIO_000300: 2.607e0

DP
type: SiteQuality
SIO_000300: 6.641113e6

QD
type: SiteQuality
SIO_000300: 1.252e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

GenotypeQuality
all individuals: 259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58846
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.471e1

FS
type: SiteQuality
SIO_000300: 6.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

DP
type: SiteQuality
SIO_000300: 6.641145e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.495190146543199e-4
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

DP
type: SiteQuality
SIO_000300: 6.641285e6

QD
type: SiteQuality
SIO_000300: 1.34e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.986e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58848
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.34e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.641285e6

MQ
type: SiteQuality
SIO_000300: 5.984e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.986e0

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58854
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.640163e6

MQRankSum
type: SiteQuality
SIO_000300: -5.434e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

MQ
type: SiteQuality
SIO_000300: 5.309e1

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 1.305e0

QD
type: SiteQuality
SIO_000300: 4.12e0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58854
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 4.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.434e0

FS
type: SiteQuality
SIO_000300: 1.305e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

DP
type: SiteQuality
SIO_000300: 6.640163e6

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

MQ
type: SiteQuality
SIO_000300: 5.309e1

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.045949214026602e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 6.143426533609038e-4
allele num: 66738
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

MQ
type: SiteQuality
SIO_000300: 5.309e1

MQRankSum
type: SiteQuality
SIO_000300: -5.434e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

FS
type: SiteQuality
SIO_000300: 1.305e0

DP
type: SiteQuality
SIO_000300: 6.640163e6

QD
type: SiteQuality
SIO_000300: 4.12e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58830
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

FS
type: SiteQuality
SIO_000300: 6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.172e-1

DP
type: SiteQuality
SIO_000300: 6.637618e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.605e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7925
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.182e0

QD
type: SiteQuality
SIO_000300: 1.432e1

DP
type: SiteQuality
SIO_000300: 1.77824e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.442e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.809e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.007e0

MQRankSum
type: SiteQuality
SIO_000300: -1.569e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45290
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 7893
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.77706e6

FS
type: SiteQuality
SIO_000300: 3.224e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.662e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-2

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.77e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.257e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.549e0

DP
type: SiteQuality
SIO_000300: 1.776939e6

VQSLOD
type: SiteQuality
SIO_000300: -4.86e-2

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2222
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.462e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.240000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.31e0

FS
type: SiteQuality
SIO_000300: 7.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.515e0

MQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

DP
type: SiteQuality
SIO_000300: 1.776441e6

GenotypeQuality
all individuals: 1836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2221
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45316
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.776413e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.193e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

FS
type: SiteQuality
SIO_000300: 4.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.22e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.546e0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45330
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2221
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 2.04e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

DP
type: SiteQuality
SIO_000300: 1.776316e6

FS
type: SiteQuality
SIO_000300: 3.108e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.039e1

GenotypeQuality
all individuals: 387
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2218
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.001e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 4.633e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.201e0

MQRankSum
type: SiteQuality
SIO_000300: -7.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.77617e6

GenotypeQuality
all individuals: 2217
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1831
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7890
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.4375e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.463e0

VQSLOD
type: SiteQuality
SIO_000300: -2.217e0

QD
type: SiteQuality
SIO_000300: 3.134e1

MQRankSum
type: SiteQuality
SIO_000300: -7.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.776098e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-1

GenotypeQuality
all individuals: 387
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2213
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 7890
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.648631635742334e-4
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

VQSLOD
type: SiteQuality
SIO_000300: 5.01e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.269e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.775988e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7896
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.774815e6

FS
type: SiteQuality
SIO_000300: 3.158e0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

QD
type: SiteQuality
SIO_000300: 1.104e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7886
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.82e0

QD
type: SiteQuality
SIO_000300: 1.491e1

VQSLOD
type: SiteQuality
SIO_000300: -2.926e0

DP
type: SiteQuality
SIO_000300: 1.773938e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7882
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.773536e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

QD
type: SiteQuality
SIO_000300: 1.358e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.079e0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

GenotypeQuality
all individuals: 7879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45365
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

QD
type: SiteQuality
SIO_000300: 1.095e1

DP
type: SiteQuality
SIO_000300: 1.773305e6

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.012e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.623208506703652e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.012e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

QD
type: SiteQuality
SIO_000300: 1.095e1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.773305e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeQuality
all individuals: 45144
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002552169343942e-5
allele num: 66610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.364e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

DP
type: SiteQuality
SIO_000300: 1.767329e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 5.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.149e1

VQSLOD
type: SiteQuality
SIO_000300: -5.639e-1

QD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
all individuals: 1704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7582
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.623294858342078e-4
allele num: 11436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

FS
type: SiteQuality
SIO_000300: 5.886e0

MQRankSum
type: SiteQuality
SIO_000300: 7.06e-1

DP
type: SiteQuality
SIO_000300: 1.743542e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.941e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.717e0

QD
type: SiteQuality
SIO_000300: 2.166e1

GenotypeQuality
all individuals: 2127
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521699433927811e-5
allele num: 65716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.237e1

MQ
type: SiteQuality
SIO_000300: 5.929e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

DP
type: SiteQuality
SIO_000300: 1.710144e6

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 1595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.703085581214826e-5
allele num: 10306
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.237e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.710144e6

FS
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

GenotypeQuality
all individuals: 2116
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 395
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2922
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.783615489394824e-4
allele num: 10278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65470
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.942944017170452e-5
allele num: 11182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15658
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.389e0

DP
type: SiteQuality
SIO_000300: 1.696166e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.78e0

QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeQuality
all individuals: 351
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 208
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42487
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.912289648138705e-4
allele num: 15688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.946144211844694e-5
allele num: 11178
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.723e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 2.458e0

DP
type: SiteQuality
SIO_000300: 1.694261e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.85e-1

GenotypeQuality
all individuals: 208
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42487
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7085
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527323823196994e-5
allele num: 65474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.458e0

MQRankSum
type: SiteQuality
SIO_000300: 7.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

QD
type: SiteQuality
SIO_000300: 1.723e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.694261e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

GenotypeQuality
all individuals: 5260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2100
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39459
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553663538624075e-5
allele num: 64364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10854
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.714e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.147e0

VQSLOD
type: SiteQuality
SIO_000300: -1.387e-1

DP
type: SiteQuality
SIO_000300: 1.63719e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 3.724e0

QD
type: SiteQuality
SIO_000300: 1.604e1

GenotypeQuality
all individuals: 6494
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.597176408497163e-5
allele num: 15158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.298865538404315e-5
allele num: 10754
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.914e0

QD
type: SiteQuality
SIO_000300: 1.489e1

FS
type: SiteQuality
SIO_000300: 2.949e0

DP
type: SiteQuality
SIO_000300: 1.615186e6

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

GenotypeQuality
all individuals: 568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 10565
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.083028872579133e-5
allele num: 61858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.308e1

DP
type: SiteQuality
SIO_000300: 1.508976e6

VQSLOD
type: SiteQuality
SIO_000300: 6.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.665e0

GenotypeQuality
all individuals: 2088
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.66267624368183e-5
allele num: 60144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14128
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.525e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

QD
type: SiteQuality
SIO_000300: 2.978e1

DP
type: SiteQuality
SIO_000300: 1.42853e6

MQ
type: SiteQuality
SIO_000300: 5.836e1

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2893
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20117
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.145737855178735e-4
allele num: 8728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13038
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.426e1

MQ
type: SiteQuality
SIO_000300: 5.889e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.305e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.258131e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.102e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 765
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2326
bin: 9.75e1
variant carriers: 325

GenotypeQuality
all individuals: 529
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 674
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 17
allele frequency: 2.068126520681265e-3
allele num: 8220
num of homozygotes: 0

African
type: Population
allele count: 310
allele frequency: 3.368100825727945e-2
allele num: 9204
num of homozygotes: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.535668155146326e-5
allele num: 54194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.048937540244688e-5
allele num: 12424
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.861e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

FS
type: SiteQuality
SIO_000300: 1.668e0

DP
type: SiteQuality
SIO_000300: 1.164713e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-3

GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 58

GenotypeQuality
all individuals: 586
bin: 5.25e1
variant carriers: 66

GenotypeQuality
all individuals: 310
bin: 4.75e1
variant carriers: 50

GenotypeQuality
all individuals: 1054
bin: 3.75e1
variant carriers: 35

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 60

GenotypeQuality
all individuals: 24722
bin: 2.25e1
variant carriers: 12

GenotypeQuality
all individuals: 409
bin: 7.75e1
variant carriers: 70

GenotypeQuality
all individuals: 9598
bin: 9.75e1
variant carriers: 8439

GenotypeQuality
all individuals: 891
bin: 5.75e1
variant carriers: 36

GenotypeQuality
all individuals: 167
bin: 9.25e1
variant carriers: 62

European (Non-Finnish)
type: Population
allele count: 3700
allele frequency: 6.948356807511737e-2
allele num: 53250
num of homozygotes: 106

South Asian
type: Population
allele count: 1532
allele frequency: 1.255737704918033e-1
allele num: 12200
num of homozygotes: 92

African
type: Population
allele count: 2109
allele frequency: 2.311992983994738e-1
allele num: 9122
num of homozygotes: 215

Other
type: Population
allele count: 68
allele frequency: 8.994708994708994e-2
allele num: 756
num of homozygotes: 2

Latino
type: Population
allele count: 314
allele frequency: 3.925e-2
allele num: 8000
num of homozygotes: 5

East Asian
type: Population
allele count: 1283
allele frequency: 1.806533370881442e-1
allele num: 7102
num of homozygotes: 103

European (Finnish)
type: Population
allele count: 457
allele frequency: 8.321194464675892e-2
allele num: 5492
num of homozygotes: 11

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.36e0

DP
type: SiteQuality
SIO_000300: 1.129985e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.04e-2

QD
type: SiteQuality
SIO_000300: 1.784e1

GenotypeQuality
all individuals: 1567
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29633
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14869
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.854158637169506e-5
allele num: 51892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7844
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: -9.99e-2

DP
type: SiteQuality
SIO_000300: 1.031932e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1916
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31785
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9668
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 384
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.391594767603674e-4
allele num: 7186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.28e0

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.645e0

VQSLOD
type: SiteQuality
SIO_000300: -8.083e-1

DP
type: SiteQuality
SIO_000300: 9.34581e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 284
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.27956597063919e-5
allele num: 43868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.0436e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.644e-1

QD
type: SiteQuality
SIO_000300: 7.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.587e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24047
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4870
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.46669955599408e-4
allele num: 4054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.91e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 7.04035e5

QD
type: SiteQuality
SIO_000300: 3.009e1

VQSLOD
type: SiteQuality
SIO_000300: -2.976e0

MQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0