11-62622797-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622797
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622797
    reference: chr 11
allele count: 2
allele frequency: 1.775000887500444e-5
allele num: 112676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.42G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.561G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+99G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-109G>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

11-62622799-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622799
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622799
    reference: chr 11
allele count: 2
allele frequency: 1.775158432890136e-5
allele num: 112666
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.40A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-111A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.559A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+97A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+97A>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

11-62622800-CAGAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622800
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622796
    reference: chr 11
allele count: 5
allele frequency: 4.437974863310374e-5
allele num: 112664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+92_37+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+92_389+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+92_65+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.35_38delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+92_65+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.554_557delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+92_44+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+92_65+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+92_65+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+92_323+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+92_60+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+92_65+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+92_65+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+92_37+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+92_335+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+92_444+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-116_51-113delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+92_65+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+92_65+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+92_56+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+92_65+95delTTCT
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: CAGAA
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

11-62622802-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622802
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622802
    reference: chr 11
allele count: 1
allele frequency: 8.876737621389386e-6
allele num: 112654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.37C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.556C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-114C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+94C>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

11-62622804-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622804
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622802
    reference: chr 11
allele count: 4
allele frequency: 3.550758086851543e-5
allele num: 112652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.33_34delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+90_65+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+90_44+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+90_65+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+90_60+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+90_323+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.552_553delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+90_65+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+90_37+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+90_335+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+90_444+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+90_56+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+90_37+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-118_51-117delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+90_65+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+90_65+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+90_65+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+90_65+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+90_389+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+90_65+91delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+90_65+91delCT
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: AAG
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

11-62622806-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622806
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622806
    reference: chr 11
allele count: 2
allele frequency: 1.775505131209829e-5
allele num: 112644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.552C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.33C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-118C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+90C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+90C>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

11-62622808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622808
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622808
    reference: chr 11
allele count: 3
allele frequency: 2.663352272727273e-5
allele num: 112640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.550C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.31C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-120C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+88C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+88C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

11-62622808-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622808
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622809
    reference: chr 11
allele count: 27
allele frequency: 2.397017045454545e-4
allele num: 112640
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.549dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.30dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-121dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+87dupT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+87dupT
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

11-62622810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622810
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622810
    reference: chr 11
allele count: 1
allele frequency: 8.878313830637286e-6
allele num: 112634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-122C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.548C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+86C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+86C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

11-62622817-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622817
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622817
    reference: chr 11
allele count: 1
allele frequency: 8.880206020779681e-6
allele num: 112610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.541C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.22C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+79C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-129C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+79C>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-62622821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622821
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622821
    reference: chr 11
allele count: 2
allele frequency: 1.776451360761742e-5
allele num: 112584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.18C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.537C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-133C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+75C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+75C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/11-62622825-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622825
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622825
    reference: chr 11
allele count: 2
allele frequency: 1.776325138553361e-5
allele num: 112592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.14T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-137T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.533T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+71T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+71T>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-62622835-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622835
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622835
    reference: chr 11
allele count: 1
allele frequency: 8.88509791377901e-6
allele num: 112548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-147C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.4C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.523C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+61C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+61C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

11-62622836-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622836
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622836
    reference: chr 11
allele count: 1
allele frequency: 8.884466398948079e-6
allele num: 112556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.3A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.522A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-148A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+60A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+60A>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

11-62622836-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622836
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622836
    reference: chr 11
allele count: 2
allele frequency: 1.776893279789616e-5
allele num: 112556
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.3A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.522A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-148A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+60A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+60A>C
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

11-62622838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622838
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622838
    reference: chr 11
allele count: 2
allele frequency: 1.777051161302934e-5
allele num: 112546
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.520C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-150C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.1C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+58C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+58C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

11-62622838-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622838
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622838
    reference: chr 11
allele count: 1
allele frequency: 8.88525580651467e-6
allele num: 112546
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-150C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000384147
  gene symbol: SNHG1
  hgvsc: ENST00000384147.1:n.1C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.520C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+58C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+58C>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

11-62622843-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622843
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622843
    reference: chr 11
allele count: 5
allele frequency: 4.443022677187745e-5
allele num: 112536
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.515A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-155A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+53A>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+53A>C
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8655
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

11-62622845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622845
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622845
    reference: chr 11
allele count: 1
allele frequency: 8.886045354375489e-6
allele num: 112536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.513G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-157G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+51G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+51G>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-62622845-CCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622845
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622843
    reference: chr 11
allele count: 3
allele frequency: 2.665813606312647e-5
allele num: 112536
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+49_323+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+49_65+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+49_65+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+49_37+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+49_65+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+49_65+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+49_44+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+49_389+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+49_65+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+49_444+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+49_65+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.511_512delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+49_65+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-159_51-158delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+49_65+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+49_60+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+49_37+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+49_65+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+49_56+50delTG
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+49_335+50delTG
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: CCA
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

11-62622850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622850
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622850
    reference: chr 11
allele count: 1
allele frequency: 8.888256835069507e-6
allele num: 112508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-162G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.508G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+46G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+46G>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

11-62622853-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622853
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622853
    reference: chr 11
allele count: 1
allele frequency: 8.889362988248262e-6
allele num: 112494
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.505A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+43A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-165A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+43A>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

11-62622858-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622858
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622858
    reference: chr 11
allele count: 1
allele frequency: 8.892999430848037e-6
allele num: 112448
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.500C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-170C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+38C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+38C>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

11-62622863-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622863
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622863
    reference: chr 11
allele count: 3
allele frequency: 2.667804930103511e-5
allele num: 112452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-175T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.495T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+33T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+33T>C
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6611
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

11-62622865-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622865
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622863
    reference: chr 11
allele count: 3
allele frequency: 2.668564312399929e-5
allele num: 112420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+29_65+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+29_37+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+29_65+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+29_444+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+29_44+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+29_323+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+29_65+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+29_37+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+29_389+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+29_65+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+29_65+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+29_65+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.491_492delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+29_60+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+29_335+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+29_65+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+29_65+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-179_51-178delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+29_65+30delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+29_56+30delCT
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: CAG
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

11-62622867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622867
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622867
    reference: chr 11
allele count: 7
allele frequency: 6.226539289462917e-5
allele num: 112422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.491C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-179C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+29C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+29C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

11-62622869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622869
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622869
    reference: chr 11
allele count: 16
allele frequency: 1.423386235855099e-4
allele num: 112408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.489C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+27C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-181C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+27C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-62622874-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622874
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622874
    reference: chr 11
allele count: 6
allele frequency: 5.338173277104575e-5
allele num: 112398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.484T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-186T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+22T>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+22T>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8609
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

11-62622878-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622878
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622877
    reference: chr 11
allele count: 1
allele frequency: 8.898538859919202e-6
allele num: 112378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-191delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.479delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+17delA
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+17delA
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: AT
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

11-62622879-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622879
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622879
    reference: chr 11
allele count: 2
allele frequency: 1.780151312861593e-5
allele num: 112350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.479A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-191A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+17A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+17A>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

11-62622883-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622883
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622882
    reference: chr 11
allele count: 1
allele frequency: 8.911226362972073e-6
allele num: 112218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.474delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+12delC
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-196delC
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: CG
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

11-62622884-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622884
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622884
    reference: chr 11
allele count: 4
allele frequency: 3.5698348951361e-5
allele num: 112050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-196C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.474C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+12C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+12C>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

11-62622884-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622884
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622884
    reference: chr 11
allele count: 2
allele frequency: 1.78491744756805e-5
allele num: 112050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540865
  gene symbol: SNHG1
  hgvsc: ENST00000540865.1:n.65+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.474C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+12C>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-196C>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10767
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

11-62622888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622888
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622888
    reference: chr 11
allele count: 2
allele frequency: 1.782848992690319e-5
allele num: 112180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544550
  gene symbol: SNHG1
  hgvsc: ENST00000544550.1:n.65+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.60+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000535689
  gene symbol: SNHG1
  hgvsc: ENST00000535689.1:n.65+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545440
  gene symbol: SNHG1
  hgvsc: ENST00000545440.1:n.65+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537965
  gene symbol: SNHG1
  hgvsc: ENST00000537965.1:n.65+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545688
  gene symbol: SNHG1
  hgvsc: ENST00000545688.1:n.37+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537024
  gene symbol: SNHG1
  hgvsc: ENST00000537024.1:n.56+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537869
  gene symbol: SNHG1
  hgvsc: ENST00000537869.1:n.37+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.470C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000545308
  gene symbol: SNHG1
  hgvsc: ENST00000545308.1:n.65+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.444+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540904
  gene symbol: SNHG1
  hgvsc: ENST00000540904.1:n.65+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.389+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.323+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541615
  gene symbol: SNHG1
  hgvsc: ENST00000541615.1:n.65+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541578
  gene symbol: SNHG1
  hgvsc: ENST00000541578.1:n.65+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-200C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.335+8C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538266
  gene symbol: SNHG1
  hgvsc: ENST00000538266.1:n.44+8C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: n.37+8C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

11-62622988-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622988
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622988
    reference: chr 11
allele count: 1
allele frequency: 1.206971467194516e-5
allele num: 82852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-50T>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-300T>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.231T>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.243T>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.297T>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.352T>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.370T>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3831
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15862
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6076
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

11-62622991-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622991
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622991
    reference: chr 11
allele count: 18
allele frequency: 2.187279753080419e-4
allele num: 82294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.349G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-303G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-53G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.240G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.294G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.228G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.367G>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16101
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10552
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13783
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7357
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 3507
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD

11-62622992-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622992
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622992
    reference: chr 11
allele count: 2
allele frequency: 2.447501101375496e-5
allele num: 81716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.348C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.227C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.239C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.293C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.366C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-304C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-54C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10506
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3832
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7054
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

11-62622997-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62622997
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62622997
    reference: chr 11
allele count: 1
allele frequency: 1.221269631909333e-5
allele num: 81882
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.361A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.222A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.234A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.288A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-59A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-309A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.343A>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15937
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7837
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4882
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17126
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

11-62623005-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623005
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623005
    reference: chr 11
allele count: 4
allele frequency: 4.939491232403063e-5
allele num: 80980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.214G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.226G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.335G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.280G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-317G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-67G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.353G>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15316
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10031
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11010
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5695
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17992
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

11-62623009-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623009
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623009
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 80822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-71G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.331G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-321G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.276G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.349G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.210G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.222G>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

11-62623010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623010
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623010
    reference: chr 11
allele count: 1
allele frequency: 1.237195031424754e-5
allele num: 80828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.209C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.221C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.348C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-72C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.330C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.275C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.51-322C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

11-62623016-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623016
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623016
    reference: chr 11
allele count: 199
allele frequency: 2.500062815648635e-3
allele num: 79598
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.324C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.342C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+321C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.269C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.203C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-78C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.215C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13464
  bin: 1.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14701
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13799
  bin: 2.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 1.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14593
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 9.75e1
  variant carriers: 193
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3069
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18547
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-62623016-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623016
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623016
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 79598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+321C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-78C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.215C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.342C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.269C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.203C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.324C>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14701
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18547
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14593
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/11-62623017-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623017
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623017
    reference: chr 11
allele count: 6859
allele frequency: 8.339209726443769e-2
allele num: 82250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.323G>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.214G>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-79G>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.202G>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+320G>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.341G>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.268G>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.25e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 13762
  bin: 2.25e1
  variant carriers: 1113
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 2.75e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 1.75e1
  variant carriers: 1823
genotype depth: GenotypeDepth
  all individuals: 13005
  bin: 1.25e1
  variant carriers: 1783
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 13991
  bin: 7.5e0
  variant carriers: 576
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 17042
  bin: 2.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 7674
  bin: 9.75e1
  variant carriers: 6703
genotype quality: GenotypeQuality
  all individuals: 2493
  bin: 3.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 3714
  bin: 3.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 8.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 4.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 9.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 5.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 7.5e0
  variant carriers: 15
num of homozygotes: 274
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

11-62623017-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623017
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623017
    reference: chr 11
allele count: 1
allele frequency: 1.21580547112462e-5
allele num: 82250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.268G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-79G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.341G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.202G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.323G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+320G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.214G>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13005
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13991
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3714
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2493
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7674
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP

11-62623019-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623019
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623019
    reference: chr 11
allele count: 7312
allele frequency: 8.867974870837073e-2
allele num: 82454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.212T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.200T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.321T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.266T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-81T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.339T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+318T>C
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 13954
  bin: 7.5e0
  variant carriers: 571
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 12651
  bin: 1.25e1
  variant carriers: 1837
genotype depth: GenotypeDepth
  all individuals: 14149
  bin: 2.25e1
  variant carriers: 1217
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.25e1
  variant carriers: 280
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 4.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 1.75e1
  variant carriers: 1918
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.75e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 2.75e1
  variant carriers: 593
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 8.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 16978
  bin: 2.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 3.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 5.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 7988
  bin: 9.75e1
  variant carriers: 7026
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 3.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 7.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.75e1
  variant carriers: 27
num of homozygotes: 317
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

11-62623020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623020
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623020
    reference: chr 11
allele count: 2
allele frequency: 2.420369832510408e-5
allele num: 82632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.265C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.338C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.211C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.199C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.320C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+317C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-82C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12712
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14318
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18038
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

11-62623020-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623020
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623020
    reference: chr 11
allele count: 1
allele frequency: 1.210184916255204e-5
allele num: 82632
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.338C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.211C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.320C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-82C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.265C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.199C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+317C>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

11-62623021-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623021
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623021
    reference: chr 11
allele count: 1
allele frequency: 1.217492938540956e-5
allele num: 82136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+316T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.319T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.198T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.337T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-83T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.264T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.210T>C
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18045
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

11-62623023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623023
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623023
    reference: chr 11
allele count: 1
allele frequency: 1.211181628797054e-5
allele num: 82564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+314C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.335C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.317C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.208C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.262C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.196C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-85C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15670
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

11-62623024-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623024
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623024
    reference: chr 11
allele count: 1
allele frequency: 1.211856806999685e-5
allele num: 82518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+313G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.316G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.207G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.334G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-86G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.261G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.195G>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15967
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS

11-62623026-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623026
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623026
    reference: chr 11
allele count: 3
allele frequency: 3.629324945560126e-5
allele num: 82660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.259A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.332A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.314A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.205A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.193A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-88A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+311A>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15834
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11887
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-62623027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623027
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623027
    reference: chr 11
allele count: 1
allele frequency: 1.213327185808925e-5
allele num: 82418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.313C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.204C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+310C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.192C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.258C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.331C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-89C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3813
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17009
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

11-62623028-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623028
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623028
    reference: chr 11
allele count: 5
allele frequency: 6.073267903993781e-5
allele num: 82328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.203G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.191G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.312G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.330G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+309G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.257G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-90G>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15905
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11713
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16641
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2820
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3762
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-62623030-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623030
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623030
    reference: chr 11
allele count: 1
allele frequency: 1.213710068938732e-5
allele num: 82392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.310C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.189C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.255C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.328C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.201C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-92C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+307C>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16428
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18456
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-62623032-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623032
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623032
    reference: chr 11
allele count: 1
allele frequency: 1.215480357837417e-5
allele num: 82272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-94C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.308C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.326C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.199C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.187C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+305C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.253C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

11-62623032-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623032
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623032
    reference: chr 11
allele count: 1
allele frequency: 1.215480357837417e-5
allele num: 82272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-94C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.308C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.253C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.326C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.187C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+305C>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.199C>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18586
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

11-62623038-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623038
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623038
    reference: chr 11
allele count: 1
allele frequency: 1.220583927350845e-5
allele num: 81928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.181G>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+299G>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.193G>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.247G>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.320G>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-100G>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.302G>C
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17335
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

11-62623041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623041
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623041
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 81762
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.317G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.244G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.178G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.190G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000365607
  gene symbol: SNHG1
  hgvsc: ENST00000365607.1:n.62G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-103G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+296G>A
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.299G>A
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14727
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19033
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2902
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

11-62623043-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623043
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623041
    reference: chr 11
allele count: 6
allele frequency: 7.352580755845302e-5
allele num: 81604
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000365607
  gene symbol: SNHG1
  hgvsc: ENST00000365607.1:n.58_59delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.313_314delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-107_18-106delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.186_187delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.174_175delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.295_296delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+292_50+293delCT
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.240_241delCT
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17800
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10413
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: CAG
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

11-62623044-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623044
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623044
    reference: chr 11
allele count: 1
allele frequency: 1.228742750417772e-5
allele num: 81384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.187T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000365607
  gene symbol: SNHG1
  hgvsc: ENST00000365607.1:n.59T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.175T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.296T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.241T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+293T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-106T>C
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.314T>C
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17637
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-62623047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623047
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623047
    reference: chr 11
allele count: 1
allele frequency: 1.231223836493474e-5
allele num: 81220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.184C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+290C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.238C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.293C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.172C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000365607
  gene symbol: SNHG1
  hgvsc: ENST00000365607.1:n.56C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-109C>T
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.311C>T
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10353
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19622
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

11-62623051-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623051
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623051
    reference: chr 11
allele count: 7572
allele frequency: 9.369431795684023e-2
allele num: 80816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.168A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+286A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.234A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.307A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.180A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-113A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.289A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000365607
  gene symbol: SNHG1
  hgvsc: ENST00000365607.1:n.52A>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 17015
  bin: 2.25e1
  variant carriers: 1430
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 1.75e1
  variant carriers: 1796
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 9.75e1
  variant carriers: 456
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 391
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 2.75e1
  variant carriers: 828
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 9931
  bin: 1.25e1
  variant carriers: 1453
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 14848
  bin: 7.5e0
  variant carriers: 432
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 19059
  bin: 2.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 3.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 7.5e0
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.75e1
  variant carriers: 30
num of homozygotes: 347
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

11-62623053-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623053
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623053
    reference: chr 11
allele count: 1
allele frequency: 1.294498381877023e-5
allele num: 77250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.232A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.166A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+284A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-115A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000365607
  gene symbol: SNHG1
  hgvsc: ENST00000365607.1:n.50A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.287A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.178A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.305A>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10184
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22760
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

11-62623055-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62623055
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 62623055
    reference: chr 11
allele count: 1
allele frequency: 1.304155037950912e-5
allele num: 76678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000365607
  gene symbol: SNHG1
  hgvsc: ENST00000365607.1:n.48A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000544983
  gene symbol: SNHG1
  hgvsc: ENST00000544983.1:n.176A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537068
  gene symbol: SNHG1
  hgvsc: ENST00000537068.1:n.18-117A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000538654
  gene symbol: SNHG1
  hgvsc: ENST00000538654.1:n.303A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000541416
  gene symbol: SNHG1
  hgvsc: ENST00000541416.1:n.230A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000540725
  gene symbol: SNHG1
  hgvsc: ENST00000540725.1:n.164A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000542112
  gene symbol: SNHG1
  hgvsc: ENST00000542112.1:n.50+282A>G
  variant of: http://identifiers.org/hgnc/32688
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000255717
  ensembl transcript: ENST00000537925
  gene symbol: SNHG1
  hgvsc: ENST00000537925.1:n.285A>G
  variant of: http://identifiers.org/hgnc/32688
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
reference allele: T

GenotypeDepth
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8665
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13351
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 724
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3680
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7636
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 262
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1108
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6113
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 637
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1980
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 464
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11804
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14111
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16771
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5045
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61382
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.234263144902493e-4
allele num: 16204
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e0

FS
type: SiteQuality
SIO_000300: 3.946e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-1

QD
type: SiteQuality
SIO_000300: 9.76e0

VQSLOD
type: SiteQuality
SIO_000300: 8.22e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.24e-1

DP
type: SiteQuality
SIO_000300: 1.961113e6

GenotypeDepth
all individuals: 13350
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 176
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 638
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7633
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8664
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11797
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1107
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3681
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 727
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1977
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6113
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 262
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14110
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2357
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3532
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5044
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16765
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61376
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.460629921259842e-4
allele num: 8128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.960917e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.024e0

QD
type: SiteQuality
SIO_000300: 1.194e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 4.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeDepth
all individuals: 6114
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 464
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8662
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 728
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7626
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1977
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11803
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13347
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 113
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3681
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1108
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 43
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4357
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14111
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 653
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16759
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5044
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3532
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.230314960629921e-4
allele num: 8128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.629301355578728e-5
allele num: 61376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.171315724512466e-5
allele num: 16204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.219809709685289e-4
allele num: 8198
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.190476190476191e-3
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.817e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

FS
type: SiteQuality
SIO_000300: 3.317e0

DP
type: SiteQuality
SIO_000300: 1.960911e6

MQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 9.41e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 637
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1977
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 719
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13346
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11796
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6114
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7601
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 464
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1108
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8662
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3681
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3533
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14109
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5043
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16719
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6626
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4358
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3343
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.818342151675486e-5
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

African
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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MQ
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ReadPosRankSum
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DP
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MQRankSum
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FS
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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Latino
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African
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European (Non-Finnish)
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Other
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South Asian
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QD
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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South Asian
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Latino
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African
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European (Non-Finnish)
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Other
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InbreedingCoeff
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FS
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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South Asian
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European (Finnish)
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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DP
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FS
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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MQ
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ClippingRankSum
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VQSLOD
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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East Asian
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MQ
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VQSLOD
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ReadPosRankSum
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DP
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African
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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East Asian
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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DP
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East Asian
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VQSLOD
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FS
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MQ
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQ
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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Latino
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African
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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BaseQRankSum
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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Latino
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MQRankSum
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InbreedingCoeff
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MQ
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QD
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ClippingRankSum
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FS
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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African
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South Asian
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European (Non-Finnish)
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Other
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MQ
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FS
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QD
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

Other
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East Asian
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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QD
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DP
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.827683615819209e-5
allele num: 11328
num of homozygotes: 0

African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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South Asian
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ClippingRankSum
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QD
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FS
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VQSLOD
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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African
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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VQSLOD
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MQ
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DP
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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Latino
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MQ
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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VQSLOD
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.520681265206813e-4
allele num: 6576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.796878061524395e-5
allele num: 61244
num of homozygotes: 0

African
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South Asian
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FS
type: SiteQuality
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 1.12e-1

ClippingRankSum
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QD
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InbreedingCoeff
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SIO_000300: 1.7e-3

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.449539486576523e-4
allele num: 61236
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
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allele num: 8068
num of homozygotes: 0

Other
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East Asian
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South Asian
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MQRankSum
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SIO_000300: 2.34e-1

ReadPosRankSum
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QD
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BaseQRankSum
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DP
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VQSLOD
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.832361773538245e-5
allele num: 11322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
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South Asian
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allele num: 16186
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African
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Other
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QD
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ClippingRankSum
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.222195062331948e-4
allele num: 8182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61210
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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African
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South Asian
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeDepth
all individuals: 246
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 462
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1018
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2923
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 11245
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6573
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11146
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 868
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8579
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 636
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3672
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1107
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1976
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11828
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3219
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4308
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4912
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2339
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14093
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 699
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.268187463232891e-5
allele num: 61196
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
SIO_000300: 1.082e1

DP
type: SiteQuality
SIO_000300: 1.917409e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

FS
type: SiteQuality
SIO_000300: 5.002e0

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

GenotypeDepth
all individuals: 1107
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 891
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10868
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8580
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 636
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10679
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3667
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 462
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1023
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7423
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2919
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6100
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1976
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14080
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.635965055786408e-5
allele num: 61126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.98e-1

FS
type: SiteQuality
SIO_000300: 1.838e0

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

DP
type: SiteQuality
SIO_000300: 1.911256e6

GenotypeDepth
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 636
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 263
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2914
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3666
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1976
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6108
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 462
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1028
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 903
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1108
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7595
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10600
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 112
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10767
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14063
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.245640259093174e-4
allele num: 8028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.679175864606328e-4
allele num: 8154
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

DP
type: SiteQuality
SIO_000300: 1.909987e6

QD
type: SiteQuality
SIO_000300: 1.526e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 1.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 462
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6108
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7595
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 263
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 903
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1108
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1028
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 636
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2914
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10600
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 3666
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1976
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8577
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14063
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1081
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.19348445435402e-5
allele num: 16146
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.245640259093174e-4
allele num: 8028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61026
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

QD
type: SiteQuality
SIO_000300: 1.526e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

DP
type: SiteQuality
SIO_000300: 1.909987e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000255717
ensembl transcript: ENST00000540865
gene symbol: SNHG1
hgvsc: ENST00000540865.1:n.65+8C>T
variant of: http://identifiers.org/hgnc/32688

GenotypeDepth
all individuals: 943
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1108
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 270
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1974
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6081
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10696
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 636
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3667
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7834
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10490
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1044
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2884
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 462
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8559
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4315
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5541
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14076
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4831
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3151
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.185822095756526e-5
allele num: 16166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.636554071746531e-5
allele num: 61104
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.907292e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.781e0

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

QD
type: SiteQuality
SIO_000300: 1.241e1

GenotypeQuality
all individuals: 1568
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1673
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6943
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4942
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.387706855791962e-5
allele num: 13536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.836e1

VQSLOD
type: SiteQuality
SIO_000300: -2.032e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.417e0

DP
type: SiteQuality
SIO_000300: 8.96829e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

FS
type: SiteQuality
SIO_000300: 3.982e0

MQRankSum
type: SiteQuality
SIO_000300: 7.87e-1

QD
type: SiteQuality
SIO_000300: 7.26e0

GenotypeQuality
all individuals: 6034
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 981
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.333728512151749e-3
allele num: 13496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43662
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

DP
type: SiteQuality
SIO_000300: 8.952e5

FS
type: SiteQuality
SIO_000300: 2.961e0

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeQuality
all individuals: 2347
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6000
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4899
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.367003367003367e-4
allele num: 5940
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.693e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 8.93548e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.322e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.925e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
all individuals: 857
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5990
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43454
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.842299189388357e-4
allele num: 5428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13426
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.345e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.88e-1

DP
type: SiteQuality
SIO_000300: 8.95696e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1564
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 362
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4345
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1830
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.318361831989936e-5
allele num: 42926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13332
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.302e0

FS
type: SiteQuality
SIO_000300: 2.694e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

DP
type: SiteQuality
SIO_000300: 9.0913e5

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeQuality
all individuals: 875
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5406
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3972
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13286
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 9.185e5

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.38e-2

QD
type: SiteQuality
SIO_000300: 1.865e1

GenotypeQuality
all individuals: 3855
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3637
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5299
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.335030121888572e-5
allele num: 42826
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.21074e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

QD
type: SiteQuality
SIO_000300: 1.018e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.047e0

GenotypeQuality
all individuals: 1554
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 696
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3271
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 846
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 184
allele frequency: 4.364119349176984e-3
allele num: 42162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.834355828220859e-4
allele num: 13040
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.618122977346278e-3
allele num: 618
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.591954022988506e-4
allele num: 8352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 9.280742459396752e-4
allele num: 4310
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.780718336483932e-4
allele num: 5290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

DP
type: SiteQuality
SIO_000300: 9.42102e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 1.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.266e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

GenotypeQuality
all individuals: 4586
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3069
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4310
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.266e0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

FS
type: SiteQuality
SIO_000300: 5.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 9.42102e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

QD
type: SiteQuality
SIO_000300: 1.205e1

GenotypeQuality
all individuals: 551
bin: 5.75e1
variant carriers: 23

GenotypeQuality
all individuals: 385
bin: 1.25e1
variant carriers: 11

GenotypeQuality
all individuals: 2671
bin: 2.75e1
variant carriers: 17

GenotypeQuality
all individuals: 579
bin: 1.75e1
variant carriers: 18

GenotypeQuality
all individuals: 977
bin: 4.25e1
variant carriers: 24

GenotypeQuality
all individuals: 575
bin: 7.75e1
variant carriers: 23

GenotypeQuality
all individuals: 286
bin: 8.75e1
variant carriers: 28

GenotypeQuality
all individuals: 473
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1325
bin: 6.75e1
variant carriers: 17

GenotypeQuality
all individuals: 13641
bin: 6.25e1
variant carriers: 24

Latino
type: Population
allele count: 232
allele frequency: 2.746212121212121e-2
allele num: 8448
num of homozygotes: 3

African
type: Population
allele count: 665
allele frequency: 1.193039110154288e-1
allele num: 5574
num of homozygotes: 25

Other
type: Population
allele count: 57
allele frequency: 8.990536277602523e-2
allele num: 634
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 3039
allele frequency: 6.991028295376121e-2
allele num: 43470
num of homozygotes: 82

East Asian
type: Population
allele count: 1094
allele frequency: 1.735406091370559e-1
allele num: 6304
num of homozygotes: 73

South Asian
type: Population
allele count: 1404
allele frequency: 1.044332044034514e-1
allele num: 13444
num of homozygotes: 82

European (Finnish)
type: Population
allele count: 368
allele frequency: 8.409506398537477e-2
allele num: 4376
num of homozygotes: 7

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.58e-2

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.768e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.709e0

DP
type: SiteQuality
SIO_000300: 9.80534e5

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

GenotypeQuality
all individuals: 1256
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17042
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1325
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.794043774668102e-4
allele num: 5574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.58e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.768e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.709e0

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

DP
type: SiteQuality
SIO_000300: 9.80534e5

GenotypeQuality
all individuals: 1203
bin: 7.5e0
variant carriers: 16

GenotypeQuality
all individuals: 689
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 2605
bin: 2.75e1
variant carriers: 22

GenotypeQuality
all individuals: 635
bin: 1.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1049
bin: 4.75e1
variant carriers: 50

GenotypeQuality
all individuals: 841
bin: 5.75e1
variant carriers: 30

GenotypeQuality
all individuals: 340
bin: 9.25e1
variant carriers: 68

GenotypeQuality
all individuals: 903
bin: 4.25e1
variant carriers: 28

GenotypeQuality
all individuals: 13441
bin: 6.25e1
variant carriers: 28

GenotypeQuality
all individuals: 1320
bin: 6.75e1
variant carriers: 19

Other
type: Population
allele count: 57
allele frequency: 8.962264150943396e-2
allele num: 636
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 3070
allele frequency: 7.05001607495522e-2
allele num: 43546
num of homozygotes: 82

European (Finnish)
type: Population
allele count: 367
allele frequency: 8.41743119266055e-2
allele num: 4360
num of homozygotes: 7

South Asian
type: Population
allele count: 1410
allele frequency: 1.049107142857143e-1
allele num: 13440
num of homozygotes: 85

Latino
type: Population
allele count: 257
allele frequency: 3.034238488783943e-2
allele num: 8470
num of homozygotes: 4

African
type: Population
allele count: 1040
allele frequency: 1.834862385321101e-1
allele num: 5668
num of homozygotes: 61

East Asian
type: Population
allele count: 1111
allele frequency: 1.754025892011367e-1
allele num: 6334
num of homozygotes: 76

FS
type: SiteQuality
SIO_000300: 5.56e-1

QD
type: SiteQuality
SIO_000300: 1.727e1

DP
type: SiteQuality
SIO_000300: 9.89435e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.68e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 656
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4362
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14965
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.292105986980838e-5
allele num: 43628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.438262421898245e-5
allele num: 13444
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.472e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.461e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

QD
type: SiteQuality
SIO_000300: 9.59e0

FS
type: SiteQuality
SIO_000300: 1.1717e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

DP
type: SiteQuality
SIO_000300: 9.84662e5

GenotypeQuality
all individuals: 3064
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18038
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14965
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.292105986980838e-5
allele num: 43628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.461e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

FS
type: SiteQuality
SIO_000300: 1.1717e1

QD
type: SiteQuality
SIO_000300: 9.59e0

DP
type: SiteQuality
SIO_000300: 9.84662e5

VQSLOD
type: SiteQuality
SIO_000300: -1.472e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

GenotypeQuality
all individuals: 15097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3039
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
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variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 732
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4269
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5642
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.181753722524226e-4
allele num: 8462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13332
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

DP
type: SiteQuality
SIO_000300: 9.86014e5

VQSLOD
type: SiteQuality
SIO_000300: -2.081e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.91e-1

QD
type: SiteQuality
SIO_000300: 5.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

FS
type: SiteQuality
SIO_000300: 1.5315e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

GenotypeQuality
all individuals: 621
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
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variant carriers: 1

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18162
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.292946895349904e-5
allele num: 43612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 7.47e0

DP
type: SiteQuality
SIO_000300: 9.88859e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

FS
type: SiteQuality
SIO_000300: 3.363e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.346e-1

GenotypeQuality
all individuals: 1160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 621
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43574
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.565925461948011e-4
allele num: 6386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e-1

DP
type: SiteQuality
SIO_000300: 9.91012e5

QD
type: SiteQuality
SIO_000300: 1.056e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.535e0

FS
type: SiteQuality
SIO_000300: 1.238e0

GenotypeQuality
all individuals: 538
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2664
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43646
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 5.274261603375527e-4
allele num: 5688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13424
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 1.956e1

DP
type: SiteQuality
SIO_000300: 9.95706e5

FS
type: SiteQuality
SIO_000300: 3.928e0

VQSLOD
type: SiteQuality
SIO_000300: -9.853e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 533
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
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variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1074
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.29821658393087e-5
allele num: 43512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

FS
type: SiteQuality
SIO_000300: 2.157e0

VQSLOD
type: SiteQuality
SIO_000300: -1.234e0

QD
type: SiteQuality
SIO_000300: 1.424e1

MQ
type: SiteQuality
SIO_000300: 5.863e1

DP
type: SiteQuality
SIO_000300: 9.9732e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18299
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.90035881865857e-5
allele num: 43476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.321262766945218e-4
allele num: 4308
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.773049645390071e-4
allele num: 5640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.506e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.225e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

MQ
type: SiteQuality
SIO_000300: 5.888e1

DP
type: SiteQuality
SIO_000300: 9.97887e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 695
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.179801793298726e-4
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.158e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

FS
type: SiteQuality
SIO_000300: 3.805e0

DP
type: SiteQuality
SIO_000300: 1.002204e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.761804087385483e-4
allele num: 5676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

DP
type: SiteQuality
SIO_000300: 1.004106e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.301601914932793e-5
allele num: 43448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

DP
type: SiteQuality
SIO_000300: 1.004106e6

GenotypeQuality
all individuals: 1763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 553
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variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.315779723032745e-5
allele num: 43182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.013e0

DP
type: SiteQuality
SIO_000300: 1.009424e6

MQ
type: SiteQuality
SIO_000300: 5.836e1

GenotypeQuality
all individuals: 484
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2030
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 602
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GenotypeQuality
all individuals: 480
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GenotypeQuality
all individuals: 526
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GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 1.011885e6

GenotypeQuality
all individuals: 147
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 301
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.395738345584814e-4
allele num: 42988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.187e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

DP
type: SiteQuality
SIO_000300: 1.012478e6

FS
type: SiteQuality
SIO_000300: 4.88e0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
all individuals: 1839
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.557436517533252e-5
allele num: 13232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5620
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.010065e6

GenotypeQuality
all individuals: 244
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GenotypeQuality
all individuals: 2682
bin: 3.25e1
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GenotypeQuality
all individuals: 113
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 678
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GenotypeQuality
all individuals: 2314
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.339728591483388e-5
allele num: 42740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4168
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 2.52e0

VQSLOD
type: SiteQuality
SIO_000300: -2.889e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

DP
type: SiteQuality
SIO_000300: 1.010963e6

GenotypeQuality
all individuals: 361
bin: 4.25e1
variant carriers: 39

GenotypeQuality
all individuals: 874
bin: 3.75e1
variant carriers: 50

GenotypeQuality
all individuals: 400
bin: 9.25e1
variant carriers: 132

GenotypeQuality
all individuals: 1793
bin: 2.75e1
variant carriers: 27

GenotypeQuality
all individuals: 515
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GenotypeQuality
all individuals: 572
bin: 4.75e1
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GenotypeQuality
all individuals: 1417
bin: 6.75e1
variant carriers: 66

GenotypeQuality
all individuals: 367
bin: 8.75e1
variant carriers: 114

GenotypeQuality
all individuals: 618
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variant carriers: 74

GenotypeQuality
all individuals: 864
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variant carriers: 74

GenotypeQuality
all individuals: 7607
bin: 9.75e1
variant carriers: 6646

GenotypeQuality
all individuals: 17421
bin: 6.25e1
variant carriers: 65

Other
type: Population
allele count: 57
allele frequency: 9.313725490196079e-2
allele num: 612
num of homozygotes: 2

East Asian
type: Population
allele count: 1166
allele frequency: 1.819032761310452e-1
allele num: 6410
num of homozygotes: 85

European (Finnish)
type: Population
allele count: 389
allele frequency: 9.41432720232333e-2
allele num: 4132
num of homozygotes: 10

African
type: Population
allele count: 1104
allele frequency: 1.946403385049365e-1
allele num: 5672
num of homozygotes: 70

South Asian
type: Population
allele count: 1433
allele frequency: 1.084127704645181e-1
allele num: 13218
num of homozygotes: 88

Latino
type: Population
allele count: 259
allele frequency: 3.104026845637584e-2
allele num: 8344
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 3164
allele frequency: 7.457339492787782e-2
allele num: 42428
num of homozygotes: 88

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.31e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

FS
type: SiteQuality
SIO_000300: 1.101e0

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.12e-2

DP
type: SiteQuality
SIO_000300: 1.052121e6

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

GenotypeQuality
all individuals: 1757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 453
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.457002457002457e-5
allele num: 40700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12800
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.79e-1

MQ
type: SiteQuality
SIO_000300: 5.805e1

QD
type: SiteQuality
SIO_000300: 1.633e1

FS
type: SiteQuality
SIO_000300: 2.463e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.546e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 9.55481e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

GenotypeQuality
all individuals: 470
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1038
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.832080200501253e-5
allele num: 12768
num of homozygotes: 0