15-71184508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184508
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184508
    reference: chr 15
allele count: 2
allele frequency: 2.201964152023605e-5
allele num: 90828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1415C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+204G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.104G>A
  hgvsp: ENSP00000249861.4:p.Arg35His
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1415C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12383C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg35His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

15-71184515-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184515
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184515
    reference: chr 15
allele count: 1
allele frequency: 1.180163806736375e-5
allele num: 84734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1408A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+197T>C
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1408A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.97T>C
  hgvsp: ENSP00000249861.4:p.Trp33Arg
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12376A>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Trp33Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

15-71184518-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184518
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184518
    reference: chr 15
allele count: 1
allele frequency: 1.242143442724766e-5
allele num: 80506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12373G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.94C>A
  hgvsp: ENSP00000249861.4:p.Leu32Ile
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1405G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+194C>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1405G>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8918
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26065
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 824
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu32Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

15-71184519-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184519
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184519
    reference: chr 15
allele count: 1
allele frequency: 1.23334977799704e-5
allele num: 81080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1404C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.93G>C
  hgvsp: ENST00000249861.4:c.93G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+193G>C
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12372C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1404C>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26927
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu31Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

15-71184520-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184520
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184520
    reference: chr 15
allele count: 1
allele frequency: 1.240417772705847e-5
allele num: 80618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1403A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+192T>C
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1403A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.92T>C
  hgvsp: ENSP00000249861.4:p.Leu31Pro
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12371A>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15641
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu31Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/15-71184526-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184526
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184526
    reference: chr 15
allele count: 1
allele frequency: 1.325240531156405e-5
allele num: 75458
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.86T>G
  hgvsp: ENSP00000249861.4:p.Val29Gly
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12365A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1397A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1397A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+186T>G
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2627
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val29Gly
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

15-71184527-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184527
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184527
    reference: chr 15
allele count: 1
allele frequency: 1.349636947661079e-5
allele num: 74094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+185G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12364C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.85G>A
  hgvsp: ENSP00000249861.4:p.Val29Met
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1396C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1396C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 2764
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genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29859
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val29Met
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

15-71184530-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184530
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184530
    reference: chr 15
allele count: 1
allele frequency: 1.3841596766603e-5
allele num: 72246
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.82G>A
  hgvsp: ENSP00000249861.4:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1393C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12361C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+182G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1393C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21379
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30962
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12062
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala28Thr
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/15-71184532-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184532
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184532
    reference: chr 15
allele count: 1
allele frequency: 1.411910880185243e-5
allele num: 70826
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.80G>T
  hgvsp: ENSP00000249861.4:p.Arg27Leu
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1391C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1391C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12359C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+180G>T
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31589
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg27Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-71184533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184533
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184533
    reference: chr 15
allele count: 48
allele frequency: 6.887645286267757e-4
allele num: 69690
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.79C>T
  hgvsp: ENSP00000249861.4:p.Arg27Trp
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12358G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+179C>T
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1390G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1390G>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15483
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22151
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg27Trp
num of homozygotes: 1
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

15-71184542-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184542
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184541
    reference: chr 15
allele count: 2
allele frequency: 3.145742237881028e-5
allele num: 63578
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1378delA
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+169delT
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.69delT
  hgvsp: ENSP00000249861.4:p.Lys25ArgfsTer55
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12346delA
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1378delA
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4343
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys25ArgfsTer55
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: GA
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

15-71184543-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184543
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184543
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 62228
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.69T>C
  hgvsp: ENST00000249861.4:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12348A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1380A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1380A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+169T>C
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24621
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4695
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33912
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe23Phe
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-71184545-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184545
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184544
    reference: chr 15
allele count: 6
allele frequency: 1.002707309736288e-4
allele num: 59838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1377delG
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.66delC
  hgvsp: ENSP00000249861.4:p.Lys25ArgfsTer55
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12345delG
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+166delC
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1377delG
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15736
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys25ArgfsTer55
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: AG
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

15-71184548-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184548
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184548
    reference: chr 15
allele count: 1
allele frequency: 1.71626677650774e-5
allele num: 58266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1375G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1375G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.64C>G
  hgvsp: ENSP00000249861.4:p.Arg22Gly
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+164C>G
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12343G>C
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5478
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg22Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

15-71184554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184554
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184554
    reference: chr 15
allele count: 1
allele frequency: 1.807860577792241e-5
allele num: 55314
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.58C>T
  hgvsp: ENST00000249861.4:c.58C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1369G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+158C>T
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1369G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12337G>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15059
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu20Leu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

15-71184555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184555
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184555
    reference: chr 15
allele count: 8
allele frequency: 1.479508803077378e-4
allele num: 54072
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.57G>A
  hgvsp: ENST00000249861.4:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1368C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12336C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1368C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+157G>A
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14999
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34781
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6702
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser19Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

15-71184558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184558
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184558
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 51328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1365C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1365C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+154G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12333C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.54G>A
  hgvsp: ENST00000249861.4:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26899
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7674
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys18Lys
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

15-71184565-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184565
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184565
    reference: chr 15
allele count: 1
allele frequency: 2.071765973315654e-5
allele num: 48268
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.47C>T
  hgvsp: ENSP00000249861.4:p.Ser16Phe
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+147C>T
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1358G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1358G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12326G>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13780
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8997
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34954
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 5450
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser16Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-71184577-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184577
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184577
    reference: chr 15
allele count: 8
allele frequency: 1.917913310318374e-4
allele num: 41712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1346T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.35A>G
  hgvsp: ENSP00000249861.4:p.Asn12Ser
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12314T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1346T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+135A>G
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12192
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26450
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12472
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 6
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 432
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 442
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn12Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

15-71184580-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184580
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184580
    reference: chr 15
allele count: 2
allele frequency: 5.139274334463974e-5
allele num: 38916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+132G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.32G>A
  hgvsp: ENSP00000249861.4:p.Gly11Asp
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1343C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12311C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1343C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14077
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14487
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2728
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly11Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

15-71184582-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184582
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184582
    reference: chr 15
allele count: 1
allele frequency: 2.697308086529643e-5
allele num: 37074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+130C>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12309G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1341G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.30C>A
  hgvsp: ENSP00000249861.4:p.Cys10Ter
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1341G>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25539
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11068
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2914
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29294
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3517
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Cys10Ter
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

15-71184588-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184588
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184588
    reference: chr 15
allele count: 1
allele frequency: 2.815473844247987e-5
allele num: 35518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1335G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12303G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.24C>G
  hgvsp: ENST00000249861.4:c.24C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1335G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+124C>G
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25038
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10288
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17078
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Ala8Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-71184589-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184589
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184589
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 35026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1334G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1334G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12302G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.23C>T
  hgvsp: ENSP00000249861.4:p.Ala8Val
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+123C>T
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16909
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17521
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala8Val
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

15-71184590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184590
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184590
    reference: chr 15
allele count: 4
allele frequency: 1.165840862722238e-4
allele num: 34310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+122G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.22G>A
  hgvsp: ENSP00000249861.4:p.Ala8Thr
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1333C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1333C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12301C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18001
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 28606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala8Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

15-71184601-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184601
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184601
    reference: chr 15
allele count: 1
allele frequency: 3.516669011112674e-5
allele num: 28436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1322C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+111G>C
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12290C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1322C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.11G>C
  hgvsp: ENSP00000249861.4:p.Arg4Pro
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24084
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22323
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg4Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

15-71184603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184603
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184603
    reference: chr 15
allele count: 10
allele frequency: 3.883796799751437e-4
allele num: 25748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+109C>T
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.9C>T
  hgvsp: ENST00000249861.4:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1320G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12288G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1320G>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19104
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25504
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 26086
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2465
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Ala3Ala
num of homozygotes: 1
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

15-71184606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184606
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184606
    reference: chr 15
allele count: 1
allele frequency: 4.275696938600992e-5
allele num: 23388
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.6G>A
  hgvsp: ENST00000249861.4:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+106G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1317C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12285C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1317C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17810
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27618
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2854
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro2Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

15-71184608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184608
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184608
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 23202
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.4C>T
  hgvsp: ENSP00000249861.4:p.Pro2Ser
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1315G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+104C>T
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12283G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1315G>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27619
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17745
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27980
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17553
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Pro2Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-71184614-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184614
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184614
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 18134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+98G>T
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1309C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-3G>T
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12277C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1309C>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 31957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31642
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

15-71184620-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184620
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184620
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 17004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1303T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+92A>G
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-9A>G
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12271T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1303T>C
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13063
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11201
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

15-71184629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184629
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184629
    reference: chr 15
allele count: 1
allele frequency: 7.024445068839562e-5
allele num: 14236
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-18G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+83G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1294C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1294C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12262C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36193
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34909
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1695
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genotype quality: GenotypeQuality
  all individuals: 332
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6874
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genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 117
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2038
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genotype quality: GenotypeQuality
  all individuals: 387
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

15-71184638-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184638
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184638
    reference: chr 15
allele count: 1
allele frequency: 7.567731194187983e-5
allele num: 13214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12253C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-27G>C
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1285C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+74G>C
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1285C>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37008
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35695
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

15-71184647-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184647
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184647
    reference: chr 15
allele count: 44
allele frequency: 3.513815684395464e-3
allele num: 12522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+65A>G
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1276T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-36A>G
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1276T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12244T>C
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 7.5e0
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36462
  bin: 2.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 34634
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3726
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 9.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

15-71184655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184655
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184655
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 12132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1268C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-44G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12236C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+57G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1268C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 34949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2717
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32884
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

15-71184660-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184660
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184660
    reference: chr 15
allele count: 7
allele frequency: 5.845999665942877e-4
allele num: 11974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12231T>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1263T>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+52A>C
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1263T>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-49A>C
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31743
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

15-71184685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184685
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184685
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 11468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12206C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1238C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1238C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-74G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+27G>A
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-71184688-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184688
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184688
    reference: chr 15
allele count: 1
allele frequency: 8.770391159445712e-5
allele num: 11402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12203C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+24G>T
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1235C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-77G>T
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1235C>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20627
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/15-71184693-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184693
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184693
    reference: chr 15
allele count: 19
allele frequency: 1.669889259975391e-3
allele num: 11378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1230C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12198C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.38+19G>T
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1230C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-82G>T
  variant of: http://identifiers.org/hgnc/23193
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21738
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19483
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

15-71184727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184727
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184727
    reference: chr 15
allele count: 23
allele frequency: 2.053204784859846e-3
allele num: 11202
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-116G>A
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1196C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12164C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000453920
  ensembl transcript: ENST00000560604
  gene symbol: THAP10
  hgvsc: ENST00000560604.1:c.23G>A
  hgvsp: ENST00000560604.1:c.23G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1196C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11378
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro8Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

15-71184783-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71184783
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71184783
    reference: chr 15
allele count: 1
allele frequency: 9.044862518089724e-5
allele num: 11056
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129028
  ensembl protein: ENSP00000249861
  ensembl transcript: ENST00000249861
  gene symbol: THAP10
  hgvsc: ENST00000249861.4:c.-172T>C
  variant of: http://identifiers.org/hgnc/23193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-12108A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-451A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-1140A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-1140A>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6836
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

15-71185184-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185184
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185184
    reference: chr 15
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-50A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-50A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11707A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-50A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-50A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-739A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-50A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-739A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-271A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-50A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-50A>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

15-71185187-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185187
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185187
    reference: chr 15
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-47G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11704G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-736G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-736G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-47G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-268G>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/15-71185189-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185189
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185189
    reference: chr 15
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.2C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-734C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-45C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-45C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-266C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11702C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-734C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

15-71185195-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185195
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185195
    reference: chr 15
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-728G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-260G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-39G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11696G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-39G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.8G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-39G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-728G>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-71185198-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185198
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185198
    reference: chr 15
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-257G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-36G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-36G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-36G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.11G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-36G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-36G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-36G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-36G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11693G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-725G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-36G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-725G>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

15-71185199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185199
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185199
    reference: chr 15
allele count: 18
allele frequency: 1.482579688658265e-4
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-724G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-35G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-724G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.12G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-35G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-256G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11692G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-71185202-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185202
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185202
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-721G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-32G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-32G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-253G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-721G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.15G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11689G>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-71185207-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185207
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185207
    reference: chr 15
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-27A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-716A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-716A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-27A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-27A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.20A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-27A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-27A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-27A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-248A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11684A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-27A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-27A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-27A>C
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

15-71185210-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185210
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185210
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-24A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-713A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-24A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-713A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-245A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.23A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11681A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-24A>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-71185211-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185211
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185211
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11680G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.24G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-712G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-23G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-712G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-244G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-23G>C
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

15-71185214-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185214
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185214
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-241A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-20A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.27A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-709A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-709A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-20A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11677A>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS

15-71185215-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185215
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185215
    reference: chr 15
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-19A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-19A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-708A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-19A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-19A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-19A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-19A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-19A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-19A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11676A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-19A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.28A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-240A>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-708A>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

15-71185217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185217
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185217
    reference: chr 15
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-17C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-17C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.30C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11674C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-706C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-238C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-706C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

15-71185219-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185219
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185219
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-704G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-15G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-236G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-15G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-15G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-15G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-15G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-15G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-704G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11672G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-15G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-15G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-15G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.32G>C
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-71185220-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185220
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185220
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-14G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-14G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11671G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-14G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-703G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-14G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-14G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-235G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-14G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-14G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-14G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-14G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-703G>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.33G>C
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

http://identifiers.org/exac.variant/15-71185221-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185221
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185220
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-233delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-12delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-12delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-12delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-701delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-12delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-12delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11669delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.35delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-12delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-12delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-701delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-12delC
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-12delC
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: AC
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

15-71185222-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185222
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185222
    reference: chr 15
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-12C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-12C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.35C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-12C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-12C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-701C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-12C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-12C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11669C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-12C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-12C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-233C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-12C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-701C>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7257
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

15-71185224-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185224
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185224
    reference: chr 15
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-10G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-699G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-10G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-10G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-10G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-10G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-10G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-10G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-699G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11667G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-10G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-231G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.37G>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-10G>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD

15-71185225-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185225
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185225
    reference: chr 15
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-9T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-698T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-9T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-9T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-9T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-9T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11666T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.38T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-9T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-9T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-698T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-9T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-9T>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-230T>C
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

15-71185228-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185228
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185228
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11663C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.41C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-227C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-6C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-6C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-695C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-695C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

15-71185233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185233
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185233
    reference: chr 15
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-1C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-222C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-1C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-690C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-690C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.46C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11658C>T
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

15-71185233-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185233
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185233
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.-1C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.-1C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.46C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-222C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-690C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-690C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11658C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.-1C>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

15-71185242-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185242
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185242
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-213C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.9C>G
  hgvsp: ENST00000560107.2:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.9C>G
  hgvsp: ENST00000559201.1:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.9C>G
  hgvsp: ENST00000260382.5:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.9C>G
  hgvsp: ENST00000560369.1:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.9C>G
  hgvsp: ENST00000561081.1:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.9C>G
  hgvsp: ENST00000559670.1:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.9C>G
  hgvsp: ENST00000560755.1:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.9C>G
  hgvsp: ENST00000558204.1:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-681C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.9C>G
  hgvsp: ENST00000558032.1:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11649C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.55C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-681C>G
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro3Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-71185250-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185250
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185250
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-673A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.17A>C
  hgvsp: ENSP00000454196.1:p.Tyr6Ser
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.17A>C
  hgvsp: ENSP00000453038.1:p.Tyr6Ser
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.17A>C
  hgvsp: ENSP00000453728.1:p.Tyr6Ser
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.17A>C
  hgvsp: ENSP00000453731.1:p.Tyr6Ser
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11641A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.17A>C
  hgvsp: ENSP00000452894.1:p.Tyr6Ser
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-205A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.17A>C
  hgvsp: ENSP00000453273.1:p.Tyr6Ser
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.17A>C
  hgvsp: ENSP00000453807.1:p.Tyr6Ser
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.63A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-673A>C
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.17A>C
  hgvsp: ENSP00000453456.1:p.Tyr6Ser
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.17A>C
  hgvsp: ENSP00000260382.4:p.Tyr6Ser
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr6Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

15-71185253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185253
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185253
    reference: chr 15
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.20G>A
  hgvsp: ENSP00000260382.4:p.Arg7His
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.20G>A
  hgvsp: ENSP00000452894.1:p.Arg7His
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.20G>A
  hgvsp: ENSP00000453807.1:p.Arg7His
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11638G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.20G>A
  hgvsp: ENSP00000453731.1:p.Arg7His
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-670G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.20G>A
  hgvsp: ENSP00000453038.1:p.Arg7His
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.20G>A
  hgvsp: ENSP00000453273.1:p.Arg7His
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.20G>A
  hgvsp: ENSP00000453456.1:p.Arg7His
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-670G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.20G>A
  hgvsp: ENSP00000454196.1:p.Arg7His
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.66G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.20G>A
  hgvsp: ENSP00000453728.1:p.Arg7His
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-202G>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg7His
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

15-71185267-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185267
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185267
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.80C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-188C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.34C>G
  hgvsp: ENSP00000453273.1:p.Arg12Gly
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.34C>G
  hgvsp: ENSP00000453038.1:p.Arg12Gly
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.34C>G
  hgvsp: ENSP00000453456.1:p.Arg12Gly
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.34C>G
  hgvsp: ENSP00000453728.1:p.Arg12Gly
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.34C>G
  hgvsp: ENSP00000454196.1:p.Arg12Gly
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-656C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.34C>G
  hgvsp: ENSP00000453807.1:p.Arg12Gly
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11624C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.34C>G
  hgvsp: ENSP00000452894.1:p.Arg12Gly
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.34C>G
  hgvsp: ENSP00000260382.4:p.Arg12Gly
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-656C>G
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.34C>G
  hgvsp: ENSP00000453731.1:p.Arg12Gly
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg12Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

15-71185268-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185268
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185268
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-187G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.35G>A
  hgvsp: ENSP00000453807.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.35G>A
  hgvsp: ENSP00000260382.4:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11623G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.35G>A
  hgvsp: ENSP00000452894.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.35G>A
  hgvsp: ENSP00000453273.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-655G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.35G>A
  hgvsp: ENSP00000453728.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.81G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.35G>A
  hgvsp: ENSP00000454196.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.35G>A
  hgvsp: ENSP00000453038.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.35G>A
  hgvsp: ENSP00000453731.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.35G>A
  hgvsp: ENSP00000453456.1:p.Arg12Gln
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-655G>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg12Gln
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

15-71185270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185270
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185270
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-653G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-185G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.83G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.37G>A
  hgvsp: ENSP00000453038.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.37G>A
  hgvsp: ENSP00000453273.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.37G>A
  hgvsp: ENSP00000452894.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11621G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.37G>A
  hgvsp: ENSP00000260382.4:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.37G>A
  hgvsp: ENSP00000454196.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.37G>A
  hgvsp: ENSP00000453731.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.37G>A
  hgvsp: ENSP00000453807.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.37G>A
  hgvsp: ENSP00000453728.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-653G>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.37G>A
  hgvsp: ENSP00000453456.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala13Thr
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

15-71185272-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185272
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185272
    reference: chr 15
allele count: 9
allele frequency: 7.412776331828814e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.39T>A
  hgvsp: ENST00000561081.1:c.39T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.39T>A
  hgvsp: ENST00000560755.1:c.39T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.39T>A
  hgvsp: ENST00000560107.2:c.39T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.85T>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-183T>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.39T>A
  hgvsp: ENST00000559670.1:c.39T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.39T>A
  hgvsp: ENST00000558032.1:c.39T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.39T>A
  hgvsp: ENST00000260382.5:c.39T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.39T>A
  hgvsp: ENST00000559201.1:c.39T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.39T>A
  hgvsp: ENST00000560369.1:c.39T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-651T>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-651T>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11619T>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.39T>A
  hgvsp: ENST00000558204.1:c.39T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala13Ala
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/15-71185281-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71185281
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 71185281
    reference: chr 15
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453807
  ensembl transcript: ENST00000560107
  gene symbol: LRRC49
  hgvsc: ENST00000560107.2:c.48C>A
  hgvsp: ENSP00000453807.1:p.Asn16Lys
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453731
  ensembl transcript: ENST00000559670
  gene symbol: LRRC49
  hgvsc: ENST00000559670.1:c.48C>A
  hgvsp: ENSP00000453731.1:p.Asn16Lys
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000439600
  ensembl transcript: ENST00000544974
  gene symbol: LRRC49
  hgvsc: ENST00000544974.2:c.19-642C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000454196
  ensembl transcript: ENST00000559201
  gene symbol: LRRC49
  hgvsc: ENST00000559201.1:c.48C>A
  hgvsp: ENSP00000454196.1:p.Asn16Lys
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000260382
  ensembl transcript: ENST00000260382
  gene symbol: LRRC49
  hgvsc: ENST00000260382.5:c.48C>A
  hgvsp: ENSP00000260382.4:p.Asn16Lys
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000560980
  gene symbol: LRRC49
  hgvsc: ENST00000560980.1:n.94C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453728
  ensembl transcript: ENST00000561081
  gene symbol: LRRC49
  hgvsc: ENST00000561081.1:c.48C>A
  hgvsp: ENSP00000453728.1:p.Asn16Lys
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453038
  ensembl transcript: ENST00000558204
  gene symbol: LRRC49
  hgvsc: ENST00000558204.1:c.48C>A
  hgvsp: ENSP00000453038.1:p.Asn16Lys
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000414065
  ensembl transcript: ENST00000443425
  gene symbol: LRRC49
  hgvsc: ENST00000443425.2:c.-174C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452894
  ensembl transcript: ENST00000560755
  gene symbol: LRRC49
  hgvsc: ENST00000560755.1:c.48C>A
  hgvsp: ENSP00000452894.1:p.Asn16Lys
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl transcript: ENST00000558799
  gene symbol: LRRC49
  hgvsc: ENST00000558799.1:n.409-11610C>A
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453273
  ensembl transcript: ENST00000560369
  gene symbol: LRRC49
  hgvsc: ENST00000560369.1:c.48C>A
  hgvsp: ENSP00000453273.1:p.Asn16Lys
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000453456
  ensembl transcript: ENST00000558032
  gene symbol: LRRC49
  hgvsc: ENST00000558032.1:c.48C>A
  hgvsp: ENSP00000453456.1:p.Asn16Lys
  variant of: http://identifiers.org/hgnc/25965
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137821
  ensembl protein: ENSP00000452925
  ensembl transcript: ENST00000558546
  gene symbol: LRRC49
  hgvsc: ENST00000558546.1:c.-419-642C>A
  variant of: http://identifiers.org/hgnc/25965
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn16Lys
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2094
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50140
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.449485432671402e-4
allele num: 13798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6760
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 4.927e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

DP
type: SiteQuality
SIO_000300: 1.107526e6

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

QD
type: SiteQuality
SIO_000300: 1.28e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

GenotypeQuality
all individuals: 1452
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18566
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.499625018749062e-5
allele num: 13334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3502
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.027784e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.446e1

VQSLOD
type: SiteQuality
SIO_000300: -1.339e0

FS
type: SiteQuality
SIO_000300: 1.4802e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

GenotypeQuality
all individuals: 1582
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.267882251553499e-5
allele num: 44094
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 2.764e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.258e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 8.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.24e-1

DP
type: SiteQuality
SIO_000300: 9.78546e5

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-2

GenotypeQuality
all individuals: 2586
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.249313959242431e-5
allele num: 44458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.79808e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.193e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.408e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 3.079e0

QD
type: SiteQuality
SIO_000300: 9.06e0

GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3332
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.361285053090117e-4
allele num: 7346
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.162e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.514e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

DP
type: SiteQuality
SIO_000300: 9.71629e5

QD
type: SiteQuality
SIO_000300: 1.37e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.75e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
all individuals: 620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29663
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5912
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.977026164645821e-5
allele num: 12536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3044
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

FS
type: SiteQuality
SIO_000300: 9.747999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.507e0

DP
type: SiteQuality
SIO_000300: 9.17212e5

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 818
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.840942562592047e-4
allele num: 5432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12400
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.01e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

FS
type: SiteQuality
SIO_000300: 4.55e0

DP
type: SiteQuality
SIO_000300: 9.06878e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.76e-1

GenotypeQuality
all individuals: 1650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.743375174337517e-4
allele num: 5736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12238
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 7.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.456e0

VQSLOD
type: SiteQuality
SIO_000300: -3.152e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 8.88382e5

GenotypeQuality
all individuals: 2374
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.604980723142649e-5
allele num: 38388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

QD
type: SiteQuality
SIO_000300: 1.446e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.75199e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

GenotypeQuality
all individuals: 520
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 9.75e1
variant carriers: 46

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5550
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 5.813953488372093e-3
allele num: 516
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 7.418790737109851e-4
allele num: 37742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.419031719532554e-3
allele num: 11980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2742
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

QD
type: SiteQuality
SIO_000300: 1.566e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

DP
type: SiteQuality
SIO_000300: 8.68008e5

GenotypeQuality
all individuals: 9085
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.855287569573284e-4
allele num: 5390
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34190
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2366
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.127659574468085e-3
allele num: 470
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

DP
type: SiteQuality
SIO_000300: 8.06128e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

FS
type: SiteQuality
SIO_000300: 5.774e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 6.004e1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.187e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1614
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5248
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2308
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33384
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.09e0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.218e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 7.90692e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.29e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31978
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5014
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.385996409335727e-4
allele num: 11140
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4196
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.79e0

QD
type: SiteQuality
SIO_000300: 1.583e1

DP
type: SiteQuality
SIO_000300: 7.71939e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

MQ
type: SiteQuality
SIO_000300: 6.037e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.683e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.222687721559781e-5
allele num: 31030
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4074
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.004e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

DP
type: SiteQuality
SIO_000300: 7.64471e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.164e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.225e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.52e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.216312056737589e-4
allele num: 4512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1974
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.262e0

DP
type: SiteQuality
SIO_000300: 7.35986e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.123e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

QD
type: SiteQuality
SIO_000300: 1.095e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 9.037505648441031e-4
allele num: 4426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.404001404001404e-4
allele num: 28490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.283e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 3.809e0

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

DP
type: SiteQuality
SIO_000300: 7.28576e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2017
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1690
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.82e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 6.88e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.522e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.002e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 7.05655e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.493506493506494e-4
allele num: 1540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3856
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25240
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.058e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

DP
type: SiteQuality
SIO_000300: 6.80747e5

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.06e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 8

East Asian
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allele count: 2
allele frequency: 7.473841554559044e-4
allele num: 2676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21428
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1162
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3066
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South Asian
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allele count: 5
allele frequency: 5.112474437627812e-4
allele num: 9780
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
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Other
type: Population
allele count: 1
allele frequency: 3.105590062111801e-3
allele num: 322
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 996
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
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European (Non-Finnish)
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allele count: 2
allele frequency: 1.009081735620585e-4
allele num: 19820
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

FS
type: SiteQuality
SIO_000300: 5.707e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.12e-2

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 296
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 5.335040546308152e-5
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European (Finnish)
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South Asian
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East Asian
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Latino
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 832
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
type: Population
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allele num: 2118
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Other
type: Population
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-2

DP
type: SiteQuality
SIO_000300: 5.72709e5

QD
type: SiteQuality
SIO_000300: 6.39e0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.55e-2

QD
type: SiteQuality
SIO_000300: 1.28e1

DP
type: SiteQuality
SIO_000300: 5.67978e5

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2590
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.341219882787063e-4
allele num: 9214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.63141e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

FS
type: SiteQuality
SIO_000300: 6.135e0

VQSLOD
type: SiteQuality
SIO_000300: -7.01e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.56e1

GenotypeQuality
all individuals: 802
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1724
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.138174368313226e-4
allele num: 8786
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.835e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.91e-2

DP
type: SiteQuality
SIO_000300: 5.01747e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

FS
type: SiteQuality
SIO_000300: 7.848e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e-1

QD
type: SiteQuality
SIO_000300: 9.56e0

MQRankSum
type: SiteQuality
SIO_000300: -1.191e0

VQSLOD
type: SiteQuality
SIO_000300: -1.336e0

GenotypeQuality
all individuals: 228
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 4.950495049504951e-3
allele num: 1818
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.3236224404861e-5
allele num: 12014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.653e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.364e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 4.76854e5

VQSLOD
type: SiteQuality
SIO_000300: -2.401e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 2357
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1138
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.196458482890644e-4
allele num: 8358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1124
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.56711e5

QD
type: SiteQuality
SIO_000300: 1.276e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.76e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.761e0

VQSLOD
type: SiteQuality
SIO_000300: -2.493e0

FS
type: SiteQuality
SIO_000300: 7.053e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 368
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1098
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.95e-1

QD
type: SiteQuality
SIO_000300: 6.21e0

FS
type: SiteQuality
SIO_000300: 1.775e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.87e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 4.54852e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

VQSLOD
type: SiteQuality
SIO_000300: -2.563e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 6.49e0

VQSLOD
type: SiteQuality
SIO_000300: -2.294e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.78e-2

DP
type: SiteQuality
SIO_000300: 4.04993e5

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.8634e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.896e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.02e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.093e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 351
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.311258278145695e-3
allele num: 302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.79e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 2.192e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.133e1

VQSLOD
type: SiteQuality
SIO_000300: -3.904e-1

DP
type: SiteQuality
SIO_000300: 3.47571e5

GenotypeQuality
all individuals: 1028
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 426
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5502
bin: 2.25e1
variant carriers: 2

East Asian
type: Population
allele count: 1
allele frequency: 3.26797385620915e-3
allele num: 306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.922e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.27e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 3.27218e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 8.414e0

QD
type: SiteQuality
SIO_000300: 1.386e1

GenotypeQuality
all individuals: 2183
bin: 6.25e1
variant carriers: 16

GenotypeQuality
all individuals: 125
bin: 2.75e1
variant carriers: 9

GenotypeQuality
all individuals: 437
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 104
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 7

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.591511936339523e-3
allele num: 7540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 7.856056766345666e-3
allele num: 3946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.352941176470588e-3
allele num: 136
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.332e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 3.06441e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.400000000000001e-2

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 6.75e1
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GenotypeQuality
all individuals: 459
bin: 7.75e1
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GenotypeQuality
all individuals: 571
bin: 1.75e1
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GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

DP
type: SiteQuality
SIO_000300: 2.88581e5

ClippingRankSum
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SIO_000300: 8.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.441e0

QD
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SIO_000300: 2.003e1

MQRankSum
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SIO_000300: 8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.393e-1

InbreedingCoeff
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SIO_000300: 6.419999999999999e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

South Asian
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allele frequency: 9.296148738379814e-4
allele num: 7530
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 192
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BaseQRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
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SIO_000300: -4.24e-1

ReadPosRankSum
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MQ
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SIO_000300: 5.973e1

FS
type: SiteQuality
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QD
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InbreedingCoeff
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SIO_000300: -9.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
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SIO_000300: 2.79652e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7522
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 300
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3228
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -9.22e-1

MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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SIO_000300: -9.07e-2

FS
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SIO_000300: 0.0e0

BaseQRankSum
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QD
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DP
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SIO_000300: 2.38998e5

ReadPosRankSum
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SIO_000300: 9.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.134796238244514e-4
allele num: 3190
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 292
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Other
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allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 7514
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

FS
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SIO_000300: 1.912e0

MQ
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VQSLOD
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ReadPosRankSum
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SIO_000300: -2.424e0

ClippingRankSum
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SIO_000300: 2.31e0

InbreedingCoeff
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SIO_000300: -9.030000000000001e-2

BaseQRankSum
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SIO_000300: -1.007e0

DP
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SIO_000300: 2.34081e5

QD
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SIO_000300: 1.433e1

GenotypeQuality
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variant carriers: 19

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.154574132492114e-4
allele num: 3170
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 106
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 18
allele frequency: 2.396166134185303e-3
allele num: 7512
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
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SIO_000300: -1.89e-1

MQ
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SIO_000300: 5.971e1

ClippingRankSum
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SIO_000300: 1.1e-1

InbreedingCoeff
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SIO_000300: -8.840000000000001e-2

FS
type: SiteQuality
SIO_000300: 5.88e-1

DP
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SIO_000300: 2.30725e5

BaseQRankSum
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SIO_000300: -3.498e0

ReadPosRankSum
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SIO_000300: -1.6e-1

QD
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SIO_000300: 1.29e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 23
allele frequency: 3.063399041022909e-3
allele num: 7508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3042
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Other
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allele frequency: 0.0e0
allele num: 124
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 160
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.04e-2

FS
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

QD
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SIO_000300: 9.69e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.59e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

DP
type: SiteQuality
SIO_000300: 2.07488e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2926
num of homozygotes: 0

South Asian
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allele frequency: 1.332267519317879e-4
allele num: 7506
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.85e-2

QD
type: SiteQuality
SIO_000300: 1.593e1

ReadPosRankSum
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MQRankSum
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SIO_000300: 4.64e-1

BaseQRankSum
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ClippingRankSum
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SIO_000300: -7.32e-1

FS
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SIO_000300: 0.0e0

MQ
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DP
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VQSLOD
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SIO_000300: 1.94e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.0e-4

BaseQRankSum
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ReadPosRankSum
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FS
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QD
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VQSLOD
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MQ
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MQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
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African
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allele num: 10406
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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Latino
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

ReadPosRankSum
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SIO_000300: 2.9e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
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DP
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VQSLOD
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MQ
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BaseQRankSum
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SIO_000300: -1.577e0

InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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MQ
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SIO_000300: 5.988e1

FS
type: SiteQuality
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QD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 1.53e0

VQSLOD
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SIO_000300: 6.47e-1

ClippingRankSum
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SIO_000300: 5.41e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 15
allele frequency: 9.084302325581395e-4
allele num: 16512
num of homozygotes: 0

QD
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SIO_000300: 1.319e1

DP
type: SiteQuality
SIO_000300: 3.861641e6

MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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SIO_000300: 6.02e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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QD
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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FS
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ReadPosRankSum
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SIO_000300: 8.98e-1

BaseQRankSum
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SIO_000300: -4.026e0

InbreedingCoeff
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SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
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BaseQRankSum
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SIO_000300: 5.8e0

FS
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DP
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SIO_000300: 3.861667e6

VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66738
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South Asian
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East Asian
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Other
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InbreedingCoeff
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DP
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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FS
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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Latino
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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South Asian
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InbreedingCoeff
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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MQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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East Asian
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South Asian
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European (Finnish)
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Other
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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FS
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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MQ
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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Other
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East Asian
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DP
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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GenotypeDepth
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South Asian
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Latino
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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ClippingRankSum
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VQSLOD
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MQ
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MQRankSum
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DP
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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Latino
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South Asian
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DP
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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FS
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MQ
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GenotypeDepth
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African
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East Asian
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Latino
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South Asian
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European (Finnish)
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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MQ
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FS
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DP
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeDepth
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African
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South Asian
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MQ
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MQRankSum
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FS
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DP
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InbreedingCoeff
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VQSLOD
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African
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European (Non-Finnish)
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MQ
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ReadPosRankSum
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FS
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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DP
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FS
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VQSLOD
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MQ
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DP
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GenotypeQuality
all individuals: 1170
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 9
allele frequency: 7.77336327517706e-4
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.19e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.301e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 3.862284e6

GenotypeDepth
all individuals: 193
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2900
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7254
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2136
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4236
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1080
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5281
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5527
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 6559
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7045
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1858
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1488
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52608
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0