11-108204674-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204674
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204674
    reference: chr 11
allele count: 2
allele frequency: 1.649811096629436e-5
allele num: 121226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.201T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.7989T>C
  hgvsp: ENST00000452508.2:c.7989T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1273A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.186T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.7989T>C
  hgvsp: ENST00000278616.4:c.7989T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24876A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4204T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1273A>G
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val2663Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

11-108204681-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204681
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204681
    reference: chr 11
allele count: 2
allele frequency: 1.650491846570278e-5
allele num: 121176
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1266T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.193A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1266T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4211A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24883T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.7996A>G
  hgvsp: ENSP00000388058.2:p.Thr2666Ala
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.208A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.7996A>G
  hgvsp: ENSP00000278616.4:p.Thr2666Ala
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr2666Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-108204687-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204687
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204687
    reference: chr 11
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4217G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8002G>C
  hgvsp: ENSP00000388058.2:p.Glu2668Gln
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8002G>C
  hgvsp: ENSP00000278616.4:p.Glu2668Gln
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.199G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1260C>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.214G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1260C>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24889C>G
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu2668Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

11-108204696-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204696
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204696
    reference: chr 11
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+1G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+1G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1251C>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+1G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+1G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+1G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1251C>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24898C>G
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13782
  bin: 6.25e1
  variant carriers: 0
hgvs: c.8010+1G>C
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/11-108204706-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204706
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204706
    reference: chr 11
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1241T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+11A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+11A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+11A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+11A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24908T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1241T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+11A>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-108204710-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204710
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204708
    reference: chr 11
allele count: 1
allele frequency: 8.313381218409152e-6
allele num: 120288
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+18_8010+19delCT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+18_207+19delCT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1235_299+1236delAG
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24914_641-24913delAG
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+18_222+19delCT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1235_*1269+1236delAG
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+18_8010+19delCT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+18_4225+19delCT
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: ACT
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-108204717-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204717
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204718
    reference: chr 11
allele count: 569
allele frequency: 4.758320789429671e-3
allele num: 119580
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+30dupT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+30dupT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1229dupA
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1229dupA
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+30dupT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+30dupT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24920dupA
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+30dupT
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 7152
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 7.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 6.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 9782
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 8644
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 9.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 21
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-108204719-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204719
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204719
    reference: chr 11
allele count: 1
allele frequency: 8.365120792344242e-6
allele num: 119544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+24T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+24T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+24T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1228A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+24T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+24T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24921A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1228A>C
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-108204725-TAAAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204725
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204721
    reference: chr 11
allele count: 15
allele frequency: 1.261415813108633e-4
allele num: 118914
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+31_8010+34delAAAC
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24931_641-24928delGTTT
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1218_*1269+1221delGTTT
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+31_222+34delAAAC
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+31_4225+34delAAAC
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+31_207+34delAAAC
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+31_8010+34delAAAC
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1218_299+1221delGTTT
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6950
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9439
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: TAAAC
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

11-108204725-TAAACTAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204725
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204717
    reference: chr 11
allele count: 98
allele frequency: 8.241249978976404e-4
allele num: 118914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6950
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 9439
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11546
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: TAAACTAAA
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum

11-108204728-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204728
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204728
    reference: chr 11
allele count: 3
allele frequency: 2.532372157412253e-5
allele num: 118466
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+33A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+33A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1219T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24930T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+33A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+33A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1219T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+33A>T
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-108204729-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204729
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204729
    reference: chr 11
allele count: 1
allele frequency: 8.448229251148959e-6
allele num: 118368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1218G>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24931G>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+34C>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+34C>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1218G>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+34C>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+34C>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+34C>A
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27241
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4737
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

11-108204729-CTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204729
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204727
    reference: chr 11
allele count: 1
allele frequency: 8.448229251148959e-6
allele num: 118368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1216_299+1217delTA
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1216_*1269+1217delTA
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+35_8010+36delTA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+35_207+36delTA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24933_641-24932delTA
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+35_8010+36delTA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+35_222+36delTA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+35_4225+36delTA
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27241
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4737
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: CTA
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-108204730-TAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204730
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204727
    reference: chr 11
allele count: 8
allele frequency: 6.760982370738469e-5
allele num: 118326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+36_207+38delAAA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1214_299+1216delTTT
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+36_8010+38delAAA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1214_*1269+1216delTTT
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+36_222+38delAAA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+36_8010+38delAAA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+36_4225+38delAAA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24935_641-24933delTTT
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8810
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4505
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27255
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: TAAA
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

11-108204731-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204731
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204731
    reference: chr 11
allele count: 1
allele frequency: 8.456802652053312e-6
allele num: 118248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1216T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+36A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1216T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+36A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+36A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24933T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+36A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+36A>T
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-108204732-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204732
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204732
    reference: chr 11
allele count: 1
allele frequency: 8.468404383246109e-6
allele num: 118086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+37A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+37A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+37A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1215T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1215T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24934T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+37A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+37A>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9602
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

11-108204732-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204732
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204732
    reference: chr 11
allele count: 1
allele frequency: 8.468404383246109e-6
allele num: 118086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+37A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+37A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+37A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+37A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24934T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+37A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1215T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1215T>A
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

11-108204733-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204733
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204733
    reference: chr 11
allele count: 4
allele frequency: 3.395124601072859e-5
allele num: 117816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1214T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1214T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+38A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24935T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+38A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+38A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+38A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+38A>T
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27228
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3073
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

11-108204733-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204733
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204732
    reference: chr 11
allele count: 3
allele frequency: 2.546343450804645e-5
allele num: 117816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1213delA
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+46delT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+46delT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+46delT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1213delA
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24936delA
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+46delT
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+46delT
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: AT
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

11-108204734-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204734
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204734
    reference: chr 11
allele count: 2
allele frequency: 1.694082569584441e-5
allele num: 118058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+39T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1213A>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+39T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+39T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+39T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1213A>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+39T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24936A>T
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4049
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-108204737-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204737
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204737
    reference: chr 11
allele count: 1
allele frequency: 8.475007203756124e-6
allele num: 117994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+42T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1210A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+42T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+42T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24939A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+42T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+42T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1210A>C
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3984
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27250
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

11-108204741-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204741
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204741
    reference: chr 11
allele count: 1
allele frequency: 8.504413790757403e-6
allele num: 117586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1206A>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+46T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+46T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+46T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+46T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+46T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24943A>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1206A>T
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5024
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum

11-108204742-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204742
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204742
    reference: chr 11
allele count: 11
allele frequency: 9.374307579553783e-5
allele num: 117342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24944T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1205T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+47A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1205T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+47A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+47A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+47A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+47A>T
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5670
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

11-108204745-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204745
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204745
    reference: chr 11
allele count: 1
allele frequency: 8.553588230262596e-6
allele num: 116910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1202T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24947T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+50A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1202T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+50A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+50A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+50A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+50A>T
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

11-108204746-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204746
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204746
    reference: chr 11
allele count: 1
allele frequency: 8.556076525548445e-6
allele num: 116876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1201C>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1201C>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+51G>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+51G>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+51G>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24948C>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+51G>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+51G>T
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3082
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

11-108204747-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108204747
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108204747
    reference: chr 11
allele count: 1
allele frequency: 8.581775741036335e-6
allele num: 116526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.207+52A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+1200T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-24949T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+1200T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4225+52A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8010+52A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.222+52A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8010+52A>T
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27240
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS

http://identifiers.org/exac.variant/11-108205649-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205649
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205649
    reference: chr 11
allele count: 1
allele frequency: 8.299719469481931e-6
allele num: 120486
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8011-47A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.223-47A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+298T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8011-47A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+298T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.208-47A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25851T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4226-47A>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10809
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12696
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4113
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-108205658-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205658
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205658
    reference: chr 11
allele count: 87
allele frequency: 7.214528567874616e-4
allele num: 120590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+289T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4226-38A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.223-38A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25860T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.208-38A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8011-38A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8011-38A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+289T>C
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11026
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11254
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13054
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

11-108205667-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205667
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205667
    reference: chr 11
allele count: 1
allele frequency: 8.286514526259965e-6
allele num: 120678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4226-29A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8011-29A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.208-29A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+280T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+280T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25869T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.223-29A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8011-29A>G
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4882
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18443
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

11-108205674-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205674
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205674
    reference: chr 11
allele count: 3
allele frequency: 2.483320364882539e-5
allele num: 120806
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8011-22A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+273T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4226-22A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+273T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.208-22A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25876T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8011-22A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.223-22A>G
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17400
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18445
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-108205678-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205678
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205678
    reference: chr 11
allele count: 1
allele frequency: 8.274036074797286e-6
allele num: 120860
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8011-18T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.223-18T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.208-18T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4226-18T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+269A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25880A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+269A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8011-18T>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18444
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

11-108205680-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205680
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205680
    reference: chr 11
allele count: 1
allele frequency: 8.27348843366317e-6
allele num: 120868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.223-16T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8011-16T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+267A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+267A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4226-16T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.208-16T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8011-16T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25882A>G
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7149
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18444
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-108205690-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205690
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205690
    reference: chr 11
allele count: 1
allele frequency: 8.264189613566494e-6
allele num: 121004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+257A>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.223-6T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8011-6T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.208-6T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8011-6T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+257A>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4226-6T>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25892A>T
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
hgvs: c.8011-6T>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

11-108205690-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205690
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205690
    reference: chr 11
allele count: 1
allele frequency: 8.264189613566494e-6
allele num: 121004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25892A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+257A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4226-6T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+257A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8011-6T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.208-6T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.223-6T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8011-6T>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17780
  bin: 6.25e1
  variant carriers: 0
hgvs: c.8011-6T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

11-108205690-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205690
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205690
    reference: chr 11
allele count: 2
allele frequency: 1.652837922713299e-5
allele num: 121004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+257A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.208-6T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8011-6T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4226-6T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+257A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8011-6T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25892A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.223-6T>G
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18447
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.8011-6T>G
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-108205700-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205700
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205700
    reference: chr 11
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8015A>C
  hgvsp: ENSP00000278616.4:p.Asp2672Ala
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.212A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8015A>C
  hgvsp: ENSP00000388058.2:p.Asp2672Ala
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4230A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25902T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.227A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+247T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+247T>G
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp2672Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

11-108205717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205717
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205717
    reference: chr 11
allele count: 2
allele frequency: 1.649484536082474e-5
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+230C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25919C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.229G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.244G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8032G>A
  hgvsp: ENSP00000388058.2:p.Gly2678Arg
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+230C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8032G>A
  hgvsp: ENSP00000278616.4:p.Gly2678Arg
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4247G>A
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18447
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly2678Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

11-108205737-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205737
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205737
    reference: chr 11
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25939C>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8052G>C
  hgvsp: ENSP00000278616.4:p.Gln2684His
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8052G>C
  hgvsp: ENSP00000388058.2:p.Gln2684His
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4267G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+210C>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.249G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.264G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+210C>G
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln2684His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

11-108205751-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205751
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205751
    reference: chr 11
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8066A>G
  hgvsp: ENSP00000278616.4:p.Glu2689Gly
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.278A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4281A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.263A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+196T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8066A>G
  hgvsp: ENSP00000388058.2:p.Glu2689Gly
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25953T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+196T>C
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18447
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu2689Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

11-108205756-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205756
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205756
    reference: chr 11
allele count: 13
allele frequency: 1.071882059992414e-4
allele num: 121282
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.268C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.283C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8071C>T
  hgvsp: ENSP00000388058.2:p.Arg2691Cys
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance&not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8071C>T
  hgvsp: ENSP00000278616.4:p.Arg2691Cys
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+191G>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&not_provided
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+191G>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25958G>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance&not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4286C>T
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11433
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4938
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg2691Cys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-108205767-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205767
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205767
    reference: chr 11
allele count: 13
allele frequency: 1.071723000824402e-4
allele num: 121300
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8082A>C
  hgvsp: ENST00000278616.4:c.8082A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+180T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.279A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+180T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4297A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8082A>C
  hgvsp: ENST00000452508.2:c.8082A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25969T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.294A>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17984
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4218
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly2694Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

11-108205776-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205776
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205776
    reference: chr 11
allele count: 3
allele frequency: 2.472962279082036e-5
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8091T>C
  hgvsp: ENST00000278616.4:c.8091T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4306T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.303T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.288T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+171A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25978A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8091T>C
  hgvsp: ENST00000452508.2:c.8091T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+171A>G
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4941
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn2697Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/11-108205785-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205785
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205785
    reference: chr 11
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+162T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25987T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8100A>C
  hgvsp: ENSP00000388058.2:p.Lys2700Asn
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+162T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8100A>C
  hgvsp: ENSP00000278616.4:p.Lys2700Asn
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.297A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.312A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4315A>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys2700Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

11-108205785-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205785
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205785
    reference: chr 11
allele count: 12
allele frequency: 9.891849116328145e-5
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8100A>G
  hgvsp: ENST00000452508.2:c.8100A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4315A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.297A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8100A>G
  hgvsp: ENST00000278616.4:c.8100A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+162T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25987T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.312A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+162T>C
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys2700Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

11-108205786-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205786
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205786
    reference: chr 11
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25988T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8101A>T
  hgvsp: ENSP00000278616.4:p.Ile2701Leu
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4316A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.298A>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+161T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8101A>T
  hgvsp: ENSP00000388058.2:p.Ile2701Leu
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+161T>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.313A>T
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4941
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile2701Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

11-108205788-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205788
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205788
    reference: chr 11
allele count: 2
allele frequency: 1.648587160803192e-5
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.315A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.300A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8103A>G
  hgvsp: ENSP00000278616.4:p.Ile2701Met
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+159T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4318A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+159T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8103A>G
  hgvsp: ENSP00000388058.2:p.Ile2701Met
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25990T>C
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18062
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile2701Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

11-108205794-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205794
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205794
    reference: chr 11
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8109T>C
  hgvsp: ENST00000278616.4:c.8109T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8109T>C
  hgvsp: ENST00000452508.2:c.8109T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-25996A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.306T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4324T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.321T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+153A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+153A>G
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp2703Asp
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

11-108205798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205798
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205798
    reference: chr 11
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4328G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.310G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8113G>A
  hgvsp: ENSP00000278616.4:p.Val2705Ile
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26000C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8113G>A
  hgvsp: ENSP00000388058.2:p.Val2705Ile
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+149C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.325G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+149C>T
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18092
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val2705Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

11-108205798-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205798
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205798
    reference: chr 11
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8113G>T
  hgvsp: ENSP00000388058.2:p.Val2705Leu
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+149C>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+149C>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.310G>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8113G>T
  hgvsp: ENSP00000278616.4:p.Val2705Leu
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4328G>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.325G>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26000C>A
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18092
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val2705Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

11-108205805-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205805
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205805
    reference: chr 11
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+142G>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.332C>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8120C>G
  hgvsp: ENSP00000278616.4:p.Ser2707Cys
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26007G>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8120C>G
  hgvsp: ENSP00000388058.2:p.Ser2707Cys
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+142G>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.317C>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4335C>G
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser2707Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

11-108205806-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205806
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205806
    reference: chr 11
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8121C>T
  hgvsp: ENST00000278616.4:c.8121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26008G>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+141G>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8121C>T
  hgvsp: ENST00000452508.2:c.8121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.318C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+141G>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.333C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4336C>T
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18438
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser2707Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-108205809-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205809
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205809
    reference: chr 11
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8124T>C
  hgvsp: ENST00000452508.2:c.8124T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.321T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4339T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+138A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26011A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8124T>C
  hgvsp: ENST00000278616.4:c.8124T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+138A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.336T>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18097
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp2708Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

11-108205814-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205814
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205814
    reference: chr 11
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.326A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4344A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26016T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+133T>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8129A>G
  hgvsp: ENSP00000388058.2:p.Lys2710Arg
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8129A>G
  hgvsp: ENSP00000278616.4:p.Lys2710Arg
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.341A>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+133T>C
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6588
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys2710Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

11-108205832-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205832
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205832
    reference: chr 11
allele count: 5
allele frequency: 4.123847384655988e-5
allele num: 121246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.359T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.344T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4362T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+115A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8147T>C
  hgvsp: ENSP00000388058.2:p.Val2716Ala
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+115A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8147T>C
  hgvsp: ENSP00000278616.4:p.Val2716Ala
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26034A>G
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18025
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val2716Ala
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/11-108205834-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205834
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205834
    reference: chr 11
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.346A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8149A>C
  hgvsp: ENSP00000388058.2:p.Lys2717Gln
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+113T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26036T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+113T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.361A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8149A>C
  hgvsp: ENSP00000278616.4:p.Lys2717Gln
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4364A>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11447
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys2717Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ

11-108205839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205839
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205839
    reference: chr 11
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+3G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+3G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+108C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+108C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+3G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+3G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26041C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+3G>A
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11452
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: c.8151+3G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

11-108205844-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205844
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205844
    reference: chr 11
allele count: 2
allele frequency: 1.650628063978344e-5
allele num: 121166
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+8T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+103A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+8T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+8T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+8T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+8T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+103A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26046A>G
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4213
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18433
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6550
  bin: 6.75e1
  variant carriers: 0
hgvs: c.8151+8T>C
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

11-108205847-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205847
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205847
    reference: chr 11
allele count: 8
allele frequency: 6.604583581005217e-5
allele num: 121128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+11C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+11C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+11C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+11C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+100G>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+11C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+100G>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26049G>A
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18434
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

11-108205853-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205853
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205853
    reference: chr 11
allele count: 1
allele frequency: 8.262004692818665e-6
allele num: 121036
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+17C>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+94G>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+17C>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+17C>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+17C>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26055G>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+94G>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+17C>G
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4912
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18425
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

11-108205877-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205877
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205877
    reference: chr 11
allele count: 3
allele frequency: 2.49409730304945e-5
allele num: 120284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+70A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+70A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+41T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+41T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+41T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26079A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+41T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+41T>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12518
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7067
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5909
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

11-108205881-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205881
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205881
    reference: chr 11
allele count: 2
allele frequency: 1.664807631478183e-5
allele num: 120134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+45G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+45G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+45G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+45G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+45G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26083C>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+66C>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+66C>G
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18422
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/11-108205883-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205883
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205883
    reference: chr 11
allele count: 1
allele frequency: 8.325978718798394e-6
allele num: 120106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+47A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+47A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+64T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+47A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26085T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+64T>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+47A>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+47A>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10467
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

11-108205887-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205887
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205887
    reference: chr 11
allele count: 1
allele frequency: 8.340005337603416e-6
allele num: 119904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+51T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26089A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+51T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+60A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+51T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+51T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+60A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+51T>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5488
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

11-108205899-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205899
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205899
    reference: chr 11
allele count: 13
allele frequency: 1.280031508467901e-4
allele num: 101560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+63T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+63T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+48A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+63T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+63T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+48A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26101A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+63T>G
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22710
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8915
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5012
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32532
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

11-108205909-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205909
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205909
    reference: chr 11
allele count: 3
allele frequency: 3.412037668895865e-5
allele num: 87924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+38C>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+38C>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26111C>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+73G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+73G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+73G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+73G>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+73G>C
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15375
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

11-108205910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205910
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205910
    reference: chr 11
allele count: 2
allele frequency: 2.280449704681763e-5
allele num: 87702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+74C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+74C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26112G>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+74C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+37G>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+37G>A
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+74C>T
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+74C>T
  variant of: http://identifiers.org/hgnc/795
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15356
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14731
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

11-108205911-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205911
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205911
    reference: chr 11
allele count: 22
allele frequency: 2.537895392566273e-4
allele num: 86686
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+75T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+75T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+36A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+75T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+75T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+75T>G
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+36A>C
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26113A>C
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14340
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14765
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21567
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-108205919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205919
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205919
    reference: chr 11
allele count: 2
allele frequency: 2.569703199280483e-5
allele num: 77830
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+83G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+28C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+83G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+83G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+83G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+83G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26121C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+28C>T
  variant of: http://identifiers.org/hgnc/28519
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10886
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31465
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

11-108205944-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205944
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205944
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 49866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+108T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+108T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+3A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26146A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+108T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+3A>G
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+108T>C
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+108T>C
  variant of: http://identifiers.org/hgnc/795
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 12083
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22148
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12824
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
hgvs: c.299+3A>G
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

11-108205944-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205944
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205945
    reference: chr 11
allele count: 1
allele frequency: 2.005374403401115e-5
allele num: 49866
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.299+2dupT
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1269+2dupT
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26147dupT
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+109dupA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+109dupA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+109dupA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+109dupA
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+109dupA
  variant of: http://identifiers.org/hgnc/795
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12083
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12824
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7131
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
hgvs: c.299+2dupT
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

11-108205951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108205951
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 108205951
    reference: chr 11
allele count: 2
allele frequency: 4.645760743321719e-5
allele num: 43050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000524792
  gene symbol: ATM
  hgvsc: ENST00000524792.1:n.4366+115G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000533979
  gene symbol: ATM
  hgvsc: ENST00000533979.1:n.363+115G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000432827
  ensembl transcript: ENST00000524755
  gene symbol: C11orf65
  hgvsc: ENST00000524755.1:c.295C>T
  hgvsp: ENSP00000432827.1:p.Ser99Leu
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000388058
  ensembl transcript: ENST00000452508
  gene symbol: ATM
  hgvsc: ENST00000452508.2:c.8151+115G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000431706
  ensembl transcript: ENST00000527531
  gene symbol: C11orf65
  hgvsc: ENST00000527531.1:c.*1265C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl protein: ENSP00000278616
  ensembl transcript: ENST00000278616
  gene symbol: ATM
  hgvsc: ENST00000278616.4:c.8151+115G>A
  variant of: http://identifiers.org/hgnc/795
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166323
  ensembl protein: ENSP00000433395
  ensembl transcript: ENST00000525729
  gene symbol: C11orf65
  hgvsc: ENST00000525729.1:c.641-26153C>T
  variant of: http://identifiers.org/hgnc/28519
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149311
  ensembl transcript: ENST00000525056
  gene symbol: ATM
  hgvsc: ENST00000525056.1:n.348+115G>A
  variant of: http://identifiers.org/hgnc/795
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12636
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser99Leu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27376
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.934984520123839e-4
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.906618e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 14078
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27375
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000930288389401e-5
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

QD
type: SiteQuality
SIO_000300: 1.645e1

DP
type: SiteQuality
SIO_000300: 2.905208e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 7.275e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.24e0

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

VQSLOD
type: SiteQuality
SIO_000300: -3.403e-1

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5572
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27374
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13969
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.903482e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 3.1095e1

MQRankSum
type: SiteQuality
SIO_000300: -1.324e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e0

QD
type: SiteQuality
SIO_000300: 1.707e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -5.495e0

GenotypeQuality
all individuals: 3266
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5547
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27372
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -3.211e0

FS
type: SiteQuality
SIO_000300: 2.246e0

DP
type: SiteQuality
SIO_000300: 2.900396e6

GenotypeQuality
all individuals: 1667
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27370
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3190
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13313
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.16e0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 4.231e0

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.386e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

DP
type: SiteQuality
SIO_000300: 2.892229e6

GenotypeQuality
all individuals: 12955
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27369
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.000200040008002e-4
allele num: 9998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.221e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.88e-1

DP
type: SiteQuality
SIO_000300: 2.883374e6

QD
type: SiteQuality
SIO_000300: 1.897e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.99e-1

MQ
type: SiteQuality
SIO_000300: 6.018e1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.07e-1

GenotypeQuality
all individuals: 3193
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12361
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 5219
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 27581
bin: 9.75e1
variant carriers: 535

GenotypeQuality
all individuals: 1655
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3190
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1911
bin: 7.25e1
variant carriers: 1

African
type: Population
allele count: 533
allele frequency: 5.448783479860969e-2
allele num: 9782
num of homozygotes: 20

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.973404578298622e-4
allele num: 65876
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 1.829268292682927e-3
allele num: 11480
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214034235765449e-4
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.097e1

MQ
type: SiteQuality
SIO_000300: 6.03e1

DP
type: SiteQuality
SIO_000300: 2.848451e6

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27309
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5255
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518787400139728e-5
allele num: 65842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

DP
type: SiteQuality
SIO_000300: 2.833831e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.865e0

GenotypeQuality
all individuals: 1654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27356
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 3152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3153
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4885
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.526624328285296e-4
allele num: 65504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.079027355623101e-4
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042752867570386e-4
allele num: 9590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.939e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.889e0

QD
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 5.678e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 2.801053e6

VQSLOD
type: SiteQuality
SIO_000300: -2.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3153
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1825
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3152
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 27356
bin: 9.75e1
variant carriers: 88

GenotypeQuality
all individuals: 1769
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4885
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1654
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 78
allele frequency: 1.19076697606253e-3
allele num: 65504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042752867570386e-4
allele num: 9590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 2.735562310030395e-3
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.939e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.801053e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e0

MQRankSum
type: SiteQuality
SIO_000300: -2.889e0

VQSLOD
type: SiteQuality
SIO_000300: -2.58e0

QD
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 5.678e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

GenotypeQuality
all individuals: 1951
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3148
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27243
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3150
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.604475550234829e-5
allele num: 65154
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

QD
type: SiteQuality
SIO_000300: 1.589e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.782319e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3187
bin: 9.25e1
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GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.532332209623046e-4
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65118
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.288e0

QD
type: SiteQuality
SIO_000300: 1.577e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

DP
type: SiteQuality
SIO_000300: 2.775337e6

MQ
type: SiteQuality
SIO_000300: 6.051e1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 381
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535673700052213e-5
allele num: 65118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 5.167e0

MQ
type: SiteQuality
SIO_000300: 6.051e1

QD
type: SiteQuality
SIO_000300: 1.577e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.288e0

DP
type: SiteQuality
SIO_000300: 2.775337e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.529987760097919e-4
allele num: 6536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.216306718687598e-5
allele num: 65102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.049979000419992e-4
allele num: 9524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.759918e6

MQ
type: SiteQuality
SIO_000300: 5.574e1

QD
type: SiteQuality
SIO_000300: 6.83e0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.775e0

MQRankSum
type: SiteQuality
SIO_000300: -3.493e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537799101925324e-5
allele num: 65028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.11e0

DP
type: SiteQuality
SIO_000300: 2.761238e6

VQSLOD
type: SiteQuality
SIO_000300: -7.591e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.3e-1

QD
type: SiteQuality
SIO_000300: 4.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.08e0

MQ
type: SiteQuality
SIO_000300: 5.564e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3186
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539835545563734e-5
allele num: 64942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.740526e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.791e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.296e0

VQSLOD
type: SiteQuality
SIO_000300: -3.153e0

QD
type: SiteQuality
SIO_000300: 7.57e0

MQ
type: SiteQuality
SIO_000300: 5.557e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539835545563734e-5
allele num: 64942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.791e0

QD
type: SiteQuality
SIO_000300: 7.57e0

VQSLOD
type: SiteQuality
SIO_000300: -3.153e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.557e1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

DP
type: SiteQuality
SIO_000300: 2.740526e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.751620248730075e-4
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544306143249838e-5
allele num: 64754
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.725759e6

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.758101243650377e-5
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.088612286499676e-5
allele num: 64754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.035e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.725759e6

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1710
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.080145382862071e-5
allele num: 64932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
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African
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allele count: 0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.358e1

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.1e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 3129
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5416872224963e-5
allele num: 64864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.711855e6

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.73e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.545e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.759635599159075e-5
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.934e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.255e1

DP
type: SiteQuality
SIO_000300: 2.68914e6

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.706008250876268e-4
allele num: 64478
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9376
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.135e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.77e0

MQRankSum
type: SiteQuality
SIO_000300: -2.341e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.781e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e0

DP
type: SiteQuality
SIO_000300: 2.682589e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.341e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557826520438684e-5
allele num: 64192
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.836e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.233e-1

DP
type: SiteQuality
SIO_000300: 2.675023e6

QD
type: SiteQuality
SIO_000300: 2.788e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55802069051477e-5
allele num: 64184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.915e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.667e0

DP
type: SiteQuality
SIO_000300: 2.674764e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -2.715e0

QD
type: SiteQuality
SIO_000300: 2.788e1

MQRankSum
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SIO_000300: -2.436e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.352e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563428285544542e-5
allele num: 63962
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.673402e6

QD
type: SiteQuality
SIO_000300: 3.082e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.034e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.848335631278314e-5
allele num: 10154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.175171e6

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.267e1

BaseQRankSum
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SIO_000300: 4.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.99e-1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 85

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 84
allele frequency: 8.246612998232868e-3
allele num: 10186
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737921445950643e-4
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507159005275056e-5
allele num: 66350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

QD
type: SiteQuality
SIO_000300: 1.577e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.1924e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.84e-1

QD
type: SiteQuality
SIO_000300: 1.613e1

ReadPosRankSum
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MQ
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FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.25e0

VQSLOD
type: SiteQuality
SIO_000300: 2.59e-1

DP
type: SiteQuality
SIO_000300: 2.203176e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
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DP
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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SIO_000300: -3.0e-4

BaseQRankSum
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ReadPosRankSum
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SIO_000300: 6.889999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66478
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.744689144416293e-5
allele num: 10262
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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DP
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QD
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FS
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InbreedingCoeff
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SIO_000300: -3.0e-4

ClippingRankSum
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VQSLOD
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MQRankSum
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SIO_000300: -4.59e-1

MQ
type: SiteQuality
SIO_000300: 5.723e1

ReadPosRankSum
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SIO_000300: 3.9e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.48e-1

MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 2.211664e6

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
SIO_000300: 1.137e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 7.181e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 2.21551e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.56e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 7.181e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.005168890491646e-5
allele num: 66552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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QD
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DP
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

East Asian
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allele count: 0
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.999400119976005e-5
allele num: 66680
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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South Asian
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East Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
type: SiteQuality
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 1.160092807424594e-4
allele num: 8620
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Latino
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num of homozygotes: 0

Other
type: Population
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499160470136723e-5
allele num: 66704
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Other
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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FS
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DP
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MQ
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SIO_000300: 5.939e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.49829064955317e-5
allele num: 66692
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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Latino
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allele frequency: 8.653513326410523e-5
allele num: 11556
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East Asian
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allele frequency: 6.958942240779402e-4
allele num: 8622
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South Asian
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allele frequency: 1.817300702689605e-4
allele num: 16508
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FS
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 13
allele frequency: 7.874015748031496e-4
allele num: 16510
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Latino
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allele count: 0
allele frequency: 0.0e0
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Other
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
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QD
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66714
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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East Asian
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Other
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African
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South Asian
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InbreedingCoeff
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 1.037882719252724e-3
allele num: 11562
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African
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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Other
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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QD
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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South Asian
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Other
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Latino
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European (Non-Finnish)
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ClippingRankSum
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FS
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DP
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MQ
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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MQ
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QD
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BaseQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66712
num of homozygotes: 0

Other
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South Asian
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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MQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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African
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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East Asian
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South Asian
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European (Non-Finnish)
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QD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Other
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num of homozygotes: 0

FS
type: SiteQuality
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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FS
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QD
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Other
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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African
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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African
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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DP
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QD
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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African
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South Asian
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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FS
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DP
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QD
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.937608990505716e-4
allele num: 10322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.63e-1

DP
type: SiteQuality
SIO_000300: 2.220227e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 3.123e0

QD
type: SiteQuality
SIO_000300: 1.354e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.976744186046512e-4
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731002250302925e-4
allele num: 11554
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 1.994e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 2.219804e6

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.926e0

VQSLOD
type: SiteQuality
SIO_000300: -7.776999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 8.289e0

MQRankSum
type: SiteQuality
SIO_000300: 8.58e-1

DP
type: SiteQuality
SIO_000300: 2.21674e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
SIO_000300: 1.121e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.356e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.519297399897563e-5
allele num: 66382
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.174939e6

VQSLOD
type: SiteQuality
SIO_000300: 3.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.629e0

QD
type: SiteQuality
SIO_000300: 1.444e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507977199384745e-5
allele num: 66314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.00928542591845e-4
allele num: 9908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.14e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

FS
type: SiteQuality
SIO_000300: 1.2482e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.987e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

DP
type: SiteQuality
SIO_000300: 2.16967e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 5.3e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508432135638218e-5
allele num: 66294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-1

DP
type: SiteQuality
SIO_000300: 2.166076e6

MQ
type: SiteQuality
SIO_000300: 5.923e1

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.222e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66198
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

QD
type: SiteQuality
SIO_000300: 1.683e1

FS
type: SiteQuality
SIO_000300: 2.219e0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

DP
type: SiteQuality
SIO_000300: 2.16554e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 2.350898766682339e-4
allele num: 55298
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14328
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

FS
type: SiteQuality
SIO_000300: 9.89e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.348400203148806e-5
allele num: 47256
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 710
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.080218e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.241421724562073e-5
allele num: 47154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.077858e6

VQSLOD
type: SiteQuality
SIO_000300: -1.02e-2

QD
type: SiteQuality
SIO_000300: 1.004e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

GenotypeQuality
all individuals: 311
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27207
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 2.767017155506364e-3
allele num: 7228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.296640027498496e-5
allele num: 46548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.05944e6

QD
type: SiteQuality
SIO_000300: 1.529e1

FS
type: SiteQuality
SIO_000300: 1.445e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

GenotypeQuality
all individuals: 3066
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 486
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.550868486352357e-4
allele num: 6448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.419315817486815e-5
allele num: 41334
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

DP
type: SiteQuality
SIO_000300: 9.38214e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

QD
type: SiteQuality
SIO_000300: 1.595e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

GenotypeQuality
all individuals: 534
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 297
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24914
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.943e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

FS
type: SiteQuality
SIO_000300: 1.3538e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.17e-2

QD
type: SiteQuality
SIO_000300: 1.164e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQ
type: SiteQuality
SIO_000300: 5.998e1

DP
type: SiteQuality
SIO_000300: 6.57296e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.426e0

GenotypeQuality
all individuals: 1204
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 534
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3680
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.723842862699339e-5
allele num: 10284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3960
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.17e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.943e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.426e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

FS
type: SiteQuality
SIO_000300: 1.3538e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.998e1

DP
type: SiteQuality
SIO_000300: 6.57296e5

QD
type: SiteQuality
SIO_000300: 1.164e1