12-51389418-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389418
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389418
    reference: chr 12
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.984G>A
  hgvsp: ENST00000546636.1:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.984G>A
  hgvsp: ENST00000262051.7:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.984G>A
  hgvsp: ENST00000541174.2:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1071G>A
  hgvsp: ENST00000547688.1:c.1071G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.984G>A
  hgvsp: ENST00000262052.5:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1071G>A
  hgvsp: ENST00000394904.3:c.1071G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.972G>A
  hgvsp: ENST00000545993.2:c.972G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.984G>A
  hgvsp: ENST00000547198.1:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.747G>A
  hgvsp: ENST00000546743.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu357Glu
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-51389420-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389420
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389420
    reference: chr 12
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1069G>T
  hgvsp: ENSP00000449200.1:p.Glu357Ter
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.745G>T
  hgvsp: ENSP00000446914.1:p.Glu249Ter
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.970G>T
  hgvsp: ENSP00000442810.2:p.Glu324Ter
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1069G>T
  hgvsp: ENSP00000378364.3:p.Glu357Ter
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.982G>T
  hgvsp: ENSP00000446769.1:p.Glu328Ter
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.982G>T
  hgvsp: ENSP00000449008.1:p.Glu328Ter
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.982G>T
  hgvsp: ENSP00000444542.2:p.Glu328Ter
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.982G>T
  hgvsp: ENSP00000262051.7:p.Glu328Ter
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.982G>T
  hgvsp: ENSP00000262052.5:p.Glu328Ter
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6067
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu357Ter
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

12-51389420-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389420
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389420
    reference: chr 12
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.745G>A
  hgvsp: ENSP00000446914.1:p.Glu249Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.982G>A
  hgvsp: ENSP00000446769.1:p.Glu328Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.982G>A
  hgvsp: ENSP00000262052.5:p.Glu328Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.982G>A
  hgvsp: ENSP00000262051.7:p.Glu328Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.970G>A
  hgvsp: ENSP00000442810.2:p.Glu324Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.982G>A
  hgvsp: ENSP00000444542.2:p.Glu328Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.982G>A
  hgvsp: ENSP00000449008.1:p.Glu328Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1069G>A
  hgvsp: ENSP00000378364.3:p.Glu357Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1069G>A
  hgvsp: ENSP00000449200.1:p.Glu357Lys
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26353
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2887
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu357Lys
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-51389421-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389421
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389421
    reference: chr 12
allele count: 4
allele frequency: 3.295653033648617e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.981C>T
  hgvsp: ENST00000547198.1:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.981C>T
  hgvsp: ENST00000541174.2:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.981C>T
  hgvsp: ENST00000262052.5:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.981C>T
  hgvsp: ENST00000262051.7:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1068C>T
  hgvsp: ENST00000394904.3:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.744C>T
  hgvsp: ENST00000546743.1:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.981C>T
  hgvsp: ENST00000546636.1:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1068C>T
  hgvsp: ENST00000547688.1:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.969C>T
  hgvsp: ENST00000545993.2:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4759
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26353
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 9719
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn356Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

12-51389428-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389428
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389428
    reference: chr 12
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.974A>G
  hgvsp: ENSP00000262051.7:p.Lys325Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.974A>G
  hgvsp: ENSP00000262052.5:p.Lys325Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.974A>G
  hgvsp: ENSP00000446769.1:p.Lys325Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1061A>G
  hgvsp: ENSP00000449200.1:p.Lys354Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.962A>G
  hgvsp: ENSP00000442810.2:p.Lys321Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.974A>G
  hgvsp: ENSP00000449008.1:p.Lys325Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.974A>G
  hgvsp: ENSP00000444542.2:p.Lys325Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.737A>G
  hgvsp: ENSP00000446914.1:p.Lys246Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1061A>G
  hgvsp: ENSP00000378364.3:p.Lys354Arg
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys354Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

12-51389444-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389444
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389444
    reference: chr 12
allele count: 5
allele frequency: 4.119566292060772e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.946G>A
  hgvsp: ENSP00000442810.2:p.Glu316Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.721G>A
  hgvsp: ENSP00000446914.1:p.Glu241Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1045G>A
  hgvsp: ENSP00000378364.3:p.Glu349Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.958G>A
  hgvsp: ENSP00000444542.2:p.Glu320Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.958G>A
  hgvsp: ENSP00000262052.5:p.Glu320Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.958G>A
  hgvsp: ENSP00000446769.1:p.Glu320Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.958G>A
  hgvsp: ENSP00000262051.7:p.Glu320Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1045G>A
  hgvsp: ENSP00000449200.1:p.Glu349Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.958G>A
  hgvsp: ENSP00000449008.1:p.Glu320Lys
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu349Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

12-51389457-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389457
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389457
    reference: chr 12
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.945C>G
  hgvsp: ENST00000546636.1:c.945C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1032C>G
  hgvsp: ENST00000394904.3:c.1032C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.708C>G
  hgvsp: ENST00000546743.1:c.708C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.945C>G
  hgvsp: ENST00000262051.7:c.945C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.933C>G
  hgvsp: ENST00000545993.2:c.933C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.945C>G
  hgvsp: ENST00000262052.5:c.945C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.945C>G
  hgvsp: ENST00000547198.1:c.945C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.945C>G
  hgvsp: ENST00000541174.2:c.945C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1032C>G
  hgvsp: ENST00000547688.1:c.1032C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val344Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD

12-51389467-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389467
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389467
    reference: chr 12
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.935T>C
  hgvsp: ENSP00000449008.1:p.Val312Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1022T>C
  hgvsp: ENSP00000449200.1:p.Val341Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.935T>C
  hgvsp: ENSP00000262051.7:p.Val312Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.935T>C
  hgvsp: ENSP00000446769.1:p.Val312Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1022T>C
  hgvsp: ENSP00000378364.3:p.Val341Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.923T>C
  hgvsp: ENSP00000442810.2:p.Val308Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.935T>C
  hgvsp: ENSP00000262052.5:p.Val312Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.698T>C
  hgvsp: ENSP00000446914.1:p.Val233Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.652T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.935T>C
  hgvsp: ENSP00000444542.2:p.Val312Ala
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10392
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val341Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD

12-51389470-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389470
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389470
    reference: chr 12
allele count: 3
allele frequency: 2.471780505891077e-5
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1019A>G
  hgvsp: ENSP00000449200.1:p.Asn340Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.649A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.932A>G
  hgvsp: ENSP00000444542.2:p.Asn311Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.932A>G
  hgvsp: ENSP00000262052.5:p.Asn311Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.932A>G
  hgvsp: ENSP00000262051.7:p.Asn311Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.932A>G
  hgvsp: ENSP00000446769.1:p.Asn311Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.932A>G
  hgvsp: ENSP00000449008.1:p.Asn311Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.695A>G
  hgvsp: ENSP00000446914.1:p.Asn232Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1019A>G
  hgvsp: ENSP00000378364.3:p.Asn340Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.920A>G
  hgvsp: ENSP00000442810.2:p.Asn307Ser
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10392
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn340Ser
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

12-51389475-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389475
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389475
    reference: chr 12
allele count: 4
allele frequency: 3.295707341188102e-5
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.644C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.915C>T
  hgvsp: ENST00000545993.2:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1014C>T
  hgvsp: ENST00000547688.1:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.927C>T
  hgvsp: ENST00000541174.2:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.690C>T
  hgvsp: ENST00000546743.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.927C>T
  hgvsp: ENST00000262052.5:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.927C>T
  hgvsp: ENST00000546636.1:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.927C>T
  hgvsp: ENST00000547198.1:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.927C>T
  hgvsp: ENST00000262051.7:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1014C>T
  hgvsp: ENST00000394904.3:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile338Ile
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS

12-51389481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389481
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389481
    reference: chr 12
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.684C>T
  hgvsp: ENST00000546743.1:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.921C>T
  hgvsp: ENST00000546636.1:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1008C>T
  hgvsp: ENST00000394904.3:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.921C>T
  hgvsp: ENST00000547198.1:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.921C>T
  hgvsp: ENST00000262052.5:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.909C>T
  hgvsp: ENST00000545993.2:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.921C>T
  hgvsp: ENST00000262051.7:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.638C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.921C>T
  hgvsp: ENST00000541174.2:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1008C>T
  hgvsp: ENST00000547688.1:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser336Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/12-51389486-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389486
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389484
    reference: chr 12
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.1001_1002delTT
  hgvsp: ENSP00000378364.3:p.Phe334CysfsTer15
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.914_915delTT
  hgvsp: ENSP00000446769.1:p.Phe305CysfsTer15
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.914_915delTT
  hgvsp: ENSP00000262051.7:p.Phe305CysfsTer15
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.914_915delTT
  hgvsp: ENSP00000262052.5:p.Phe305CysfsTer15
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.1001_1002delTT
  hgvsp: ENSP00000449200.1:p.Phe334CysfsTer15
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.902_903delTT
  hgvsp: ENSP00000442810.2:p.Phe301CysfsTer15
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.677_678delTT
  hgvsp: ENSP00000446914.1:p.Phe226CysfsTer15
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.914_915delTT
  hgvsp: ENSP00000444542.2:p.Phe305CysfsTer15
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.914_915delTT
  hgvsp: ENSP00000449008.1:p.Phe305CysfsTer15
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.631_632delTT
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe334CysfsTer15
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: CAA
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

12-51389493-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389493
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389493
    reference: chr 12
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.909A>T
  hgvsp: ENST00000541174.2:c.909A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.672A>T
  hgvsp: ENST00000546743.1:c.672A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.909A>T
  hgvsp: ENST00000262051.7:c.909A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.996A>T
  hgvsp: ENST00000394904.3:c.996A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.626A>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.909A>T
  hgvsp: ENST00000547198.1:c.909A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.909A>T
  hgvsp: ENST00000546636.1:c.909A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.909A>T
  hgvsp: ENST00000262052.5:c.909A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.897A>T
  hgvsp: ENST00000545993.2:c.897A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.996A>T
  hgvsp: ENST00000547688.1:c.996A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala332Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

12-51389493-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389493
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389493
    reference: chr 12
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.909A>C
  hgvsp: ENST00000541174.2:c.909A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.996A>C
  hgvsp: ENST00000547688.1:c.996A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.909A>C
  hgvsp: ENST00000547198.1:c.909A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.909A>C
  hgvsp: ENST00000262051.7:c.909A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.996A>C
  hgvsp: ENST00000394904.3:c.996A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.909A>C
  hgvsp: ENST00000262052.5:c.909A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.626A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.897A>C
  hgvsp: ENST00000545993.2:c.897A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.909A>C
  hgvsp: ENST00000546636.1:c.909A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.672A>C
  hgvsp: ENST00000546743.1:c.672A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala332Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-51389496-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389496
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389496
    reference: chr 12
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.906T>C
  hgvsp: ENST00000546636.1:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.993T>C
  hgvsp: ENST00000547688.1:c.993T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.906T>C
  hgvsp: ENST00000262052.5:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.894T>C
  hgvsp: ENST00000545993.2:c.894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.623T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.906T>C
  hgvsp: ENST00000541174.2:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.669T>C
  hgvsp: ENST00000546743.1:c.669T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.906T>C
  hgvsp: ENST00000547198.1:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.906T>C
  hgvsp: ENST00000262051.7:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.993T>C
  hgvsp: ENST00000394904.3:c.993T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile331Ile
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

12-51389503-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389503
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389503
    reference: chr 12
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.616C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.899C>G
  hgvsp: ENSP00000449008.1:p.Ser300Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.899C>G
  hgvsp: ENSP00000262051.7:p.Ser300Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.887C>G
  hgvsp: ENSP00000442810.2:p.Ser296Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.899C>G
  hgvsp: ENSP00000446769.1:p.Ser300Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.899C>G
  hgvsp: ENSP00000262052.5:p.Ser300Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.899C>G
  hgvsp: ENSP00000444542.2:p.Ser300Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.662C>G
  hgvsp: ENSP00000446914.1:p.Ser221Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.986C>G
  hgvsp: ENSP00000378364.3:p.Ser329Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.986C>G
  hgvsp: ENSP00000449200.1:p.Ser329Cys
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6067
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser329Cys
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

12-51389509-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389509
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389509
    reference: chr 12
allele count: 257
allele frequency: 2.117526860457452e-3
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.656T>C
  hgvsp: ENSP00000446914.1:p.Ile219Thr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.893T>C
  hgvsp: ENSP00000446769.1:p.Ile298Thr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.893T>C
  hgvsp: ENSP00000444542.2:p.Ile298Thr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.893T>C
  hgvsp: ENSP00000262051.7:p.Ile298Thr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.893T>C
  hgvsp: ENSP00000449008.1:p.Ile298Thr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.893T>C
  hgvsp: ENSP00000262052.5:p.Ile298Thr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.980T>C
  hgvsp: ENSP00000378364.3:p.Ile327Thr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.610T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.980T>C
  hgvsp: ENSP00000449200.1:p.Ile327Thr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.881T>C
  hgvsp: ENSP00000442810.2:p.Ile294Thr
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 8.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 9020
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9439
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 7.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile327Thr
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum

12-51389524-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389524
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389524
    reference: chr 12
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.878A>G
  hgvsp: ENSP00000449008.1:p.Asn293Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.965A>G
  hgvsp: ENSP00000378364.3:p.Asn322Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.965A>G
  hgvsp: ENSP00000449200.1:p.Asn322Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.878A>G
  hgvsp: ENSP00000444542.2:p.Asn293Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.878A>G
  hgvsp: ENSP00000262051.7:p.Asn293Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.866A>G
  hgvsp: ENSP00000442810.2:p.Asn289Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.878A>G
  hgvsp: ENSP00000262052.5:p.Asn293Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.595A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.641A>G
  hgvsp: ENSP00000446914.1:p.Asn214Ser
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.878A>G
  hgvsp: ENSP00000446769.1:p.Asn293Ser
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4189
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn322Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

12-51389531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389531
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389531
    reference: chr 12
allele count: 44
allele frequency: 3.664162822071585e-4
allele num: 120082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.859G>A
  hgvsp: ENSP00000442810.2:p.Glu287Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.871G>A
  hgvsp: ENSP00000444542.2:p.Glu291Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.871G>A
  hgvsp: ENSP00000446769.1:p.Glu291Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.871G>A
  hgvsp: ENSP00000262052.5:p.Glu291Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.958G>A
  hgvsp: ENSP00000378364.3:p.Glu320Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.958G>A
  hgvsp: ENSP00000449200.1:p.Glu320Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.871G>A
  hgvsp: ENSP00000262051.7:p.Glu291Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.634G>A
  hgvsp: ENSP00000446914.1:p.Glu212Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.588G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.871G>A
  hgvsp: ENSP00000449008.1:p.Glu291Lys
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10368
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9450
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 2
hgvs: p.Glu320Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

12-51389533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389533
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389533
    reference: chr 12
allele count: 4
allele frequency: 3.29663084327817e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.956G>A
  hgvsp: ENSP00000449200.1:p.Arg319Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.956G>A
  hgvsp: ENSP00000378364.3:p.Arg319Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.586G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.869G>A
  hgvsp: ENSP00000262051.7:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.869G>A
  hgvsp: ENSP00000262052.5:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.869G>A
  hgvsp: ENSP00000446769.1:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.869G>A
  hgvsp: ENSP00000449008.1:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.869G>A
  hgvsp: ENSP00000444542.2:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.857G>A
  hgvsp: ENSP00000442810.2:p.Arg286Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.632G>A
  hgvsp: ENSP00000446914.1:p.Arg211Gln
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg319Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

12-51389550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389550
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389550
    reference: chr 12
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.615C>T
  hgvsp: ENST00000546743.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.852C>T
  hgvsp: ENST00000546636.1:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.840C>T
  hgvsp: ENST00000545993.2:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.939C>T
  hgvsp: ENST00000394904.3:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.939C>T
  hgvsp: ENST00000547688.1:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.852C>T
  hgvsp: ENST00000547198.1:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.852C>T
  hgvsp: ENST00000262051.7:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.852C>T
  hgvsp: ENST00000541174.2:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.852C>T
  hgvsp: ENST00000262052.5:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.569C>T
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn313Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

12-51389554-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389554
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389554
    reference: chr 12
allele count: 2
allele frequency: 1.647962294622699e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.848G>A
  hgvsp: ENSP00000444542.2:p.Arg283Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.848G>A
  hgvsp: ENSP00000449008.1:p.Arg283Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.611G>A
  hgvsp: ENSP00000446914.1:p.Arg204Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.848G>A
  hgvsp: ENSP00000262051.7:p.Arg283Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.848G>A
  hgvsp: ENSP00000262052.5:p.Arg283Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.848G>A
  hgvsp: ENSP00000446769.1:p.Arg283Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.935G>A
  hgvsp: ENSP00000449200.1:p.Arg312Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.935G>A
  hgvsp: ENSP00000378364.3:p.Arg312Gln
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.565G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.836G>A
  hgvsp: ENSP00000442810.2:p.Arg279Gln
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg312Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

12-51389555-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389555
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389555
    reference: chr 12
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.847C>T
  hgvsp: ENSP00000449008.1:p.Arg283Trp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.847C>T
  hgvsp: ENSP00000262052.5:p.Arg283Trp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.847C>T
  hgvsp: ENSP00000444542.2:p.Arg283Trp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.847C>T
  hgvsp: ENSP00000262051.7:p.Arg283Trp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.835C>T
  hgvsp: ENSP00000442810.2:p.Arg279Trp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.610C>T
  hgvsp: ENSP00000446914.1:p.Arg204Trp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.934C>T
  hgvsp: ENSP00000378364.3:p.Arg312Trp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.847C>T
  hgvsp: ENSP00000446769.1:p.Arg283Trp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.564C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.934C>T
  hgvsp: ENSP00000449200.1:p.Arg312Trp
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg312Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-51389555-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389555
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389555
    reference: chr 12
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.847C>G
  hgvsp: ENSP00000449008.1:p.Arg283Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.847C>G
  hgvsp: ENSP00000446769.1:p.Arg283Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.847C>G
  hgvsp: ENSP00000262051.7:p.Arg283Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.934C>G
  hgvsp: ENSP00000378364.3:p.Arg312Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.610C>G
  hgvsp: ENSP00000446914.1:p.Arg204Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.564C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.835C>G
  hgvsp: ENSP00000442810.2:p.Arg279Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.847C>G
  hgvsp: ENSP00000444542.2:p.Arg283Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.847C>G
  hgvsp: ENSP00000262052.5:p.Arg283Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.934C>G
  hgvsp: ENSP00000449200.1:p.Arg312Gly
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4169
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg312Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

12-51389561-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389561
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389561
    reference: chr 12
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.928G>A
  hgvsp: ENSP00000378364.3:p.Val310Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.928G>A
  hgvsp: ENSP00000449200.1:p.Val310Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.841G>A
  hgvsp: ENSP00000262052.5:p.Val281Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.829G>A
  hgvsp: ENSP00000442810.2:p.Val277Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.558G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.841G>A
  hgvsp: ENSP00000262051.7:p.Val281Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.841G>A
  hgvsp: ENSP00000444542.2:p.Val281Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.841G>A
  hgvsp: ENSP00000449008.1:p.Val281Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.841G>A
  hgvsp: ENSP00000446769.1:p.Val281Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.604G>A
  hgvsp: ENSP00000446914.1:p.Val202Ile
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val310Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

12-51389563-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389563
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389563
    reference: chr 12
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.839A>G
  hgvsp: ENSP00000262051.7:p.Gln280Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.926A>G
  hgvsp: ENSP00000449200.1:p.Gln309Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.827A>G
  hgvsp: ENSP00000442810.2:p.Gln276Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.839A>G
  hgvsp: ENSP00000262052.5:p.Gln280Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.926A>G
  hgvsp: ENSP00000378364.3:p.Gln309Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.839A>G
  hgvsp: ENSP00000444542.2:p.Gln280Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.602A>G
  hgvsp: ENSP00000446914.1:p.Gln201Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.839A>G
  hgvsp: ENSP00000449008.1:p.Gln280Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.839A>G
  hgvsp: ENSP00000446769.1:p.Gln280Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.556A>G
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln309Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-51389564-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389564
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389564
    reference: chr 12
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.555C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.925C>G
  hgvsp: ENSP00000378364.3:p.Gln309Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.838C>G
  hgvsp: ENSP00000262052.5:p.Gln280Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.601C>G
  hgvsp: ENSP00000446914.1:p.Gln201Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.826C>G
  hgvsp: ENSP00000442810.2:p.Gln276Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.838C>G
  hgvsp: ENSP00000262051.7:p.Gln280Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.838C>G
  hgvsp: ENSP00000449008.1:p.Gln280Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.838C>G
  hgvsp: ENSP00000446769.1:p.Gln280Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.925C>G
  hgvsp: ENSP00000449200.1:p.Gln309Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.838C>G
  hgvsp: ENSP00000444542.2:p.Gln280Glu
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln309Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

12-51389566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389566
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389566
    reference: chr 12
allele count: 7
allele frequency: 5.768628549766783e-5
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.923G>A
  hgvsp: ENSP00000449200.1:p.Arg308Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.923G>A
  hgvsp: ENSP00000378364.3:p.Arg308Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.824G>A
  hgvsp: ENSP00000442810.2:p.Arg275Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.836G>A
  hgvsp: ENSP00000444542.2:p.Arg279Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.599G>A
  hgvsp: ENSP00000446914.1:p.Arg200Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.836G>A
  hgvsp: ENSP00000449008.1:p.Arg279Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.836G>A
  hgvsp: ENSP00000262051.7:p.Arg279Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.836G>A
  hgvsp: ENSP00000446769.1:p.Arg279Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.836G>A
  hgvsp: ENSP00000262052.5:p.Arg279Lys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.553G>A
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26129
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Arg308Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

12-51389573-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389573
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389573
    reference: chr 12
allele count: 325
allele frequency: 2.678159404047729e-3
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.595-3T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.832-3T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.832-3T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.832-3T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.919-3T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.820-3T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.549-3T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.832-3T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.832-3T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.919-3T>C
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 6.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 9167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9442
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 7.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.919-3T>C
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

12-51389596-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389596
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389596
    reference: chr 12
allele count: 2
allele frequency: 1.648505629646725e-5
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.832-26A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.820-26A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.595-26A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.919-26A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.832-26A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.832-26A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.832-26A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.832-26A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.919-26A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.549-26A>G
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

12-51389600-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389600
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389600
    reference: chr 12
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.832-30A>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.832-30A>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.549-30A>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.832-30A>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.919-30A>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.832-30A>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.820-30A>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.832-30A>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.595-30A>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.919-30A>T
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8167
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9588
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/12-51389615-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389615
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389615
    reference: chr 12
allele count: 89
allele frequency: 7.340085111998153e-4
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.595-45T>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.832-45T>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.832-45T>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.919-45T>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.832-45T>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.919-45T>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.832-45T>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.832-45T>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.820-45T>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.549-45T>G
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8141
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9683
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9367
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 2
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

12-51389621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389621
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389621
    reference: chr 12
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.832-51G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.919-51G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.919-51G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.832-51G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.832-51G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.549-51G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.595-51G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.820-51G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.832-51G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.832-51G>A
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9325
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4623
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

12-51389622-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51389622
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51389622
    reference: chr 12
allele count: 2
allele frequency: 1.650192247396822e-5
allele num: 121198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.832-52A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.832-52A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.919-52A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.832-52A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.595-52A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.820-52A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.919-52A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.832-52A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.549-52A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.832-52A>C
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6037
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/12-51390555-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390555
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390555
    reference: chr 12
allele count: 5
allele frequency: 4.122419365477211e-5
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.831+45G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.918+45G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.548+45G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.594+45G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.831+45G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.918+45G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.831+45G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.819+45G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.831+45G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.831+45G>T
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS

12-51390556-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390556
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390556
    reference: chr 12
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.831+44G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.594+44G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.918+44G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.918+44G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.831+44G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.831+44G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.831+44G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.831+44G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.819+44G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.548+44G>A
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

12-51390565-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390565
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390565
    reference: chr 12
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.831+35C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.831+35C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.918+35C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.831+35C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.594+35C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.819+35C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.548+35C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.831+35C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.831+35C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.918+35C>T
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-51390565-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390565
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390565
    reference: chr 12
allele count: 2
allele frequency: 1.648750247312537e-5
allele num: 121304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.594+35C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.918+35C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.831+35C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.831+35C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.548+35C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.831+35C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.831+35C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.819+35C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.918+35C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.831+35C>G
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6374
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-51390571-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390571
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390571
    reference: chr 12
allele count: 2
allele frequency: 1.648233917357551e-5
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.831+29C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.819+29C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.548+29C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.831+29C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.831+29C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.918+29C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.918+29C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.831+29C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.594+29C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.831+29C>T
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

12-51390575-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390575
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390575
    reference: chr 12
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.548+25A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.831+25A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.831+25A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.594+25A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.918+25A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.831+25A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.918+25A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.831+25A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.819+25A>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.831+25A>C
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11915
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

12-51390582-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390582
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390582
    reference: chr 12
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.831+18C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.831+18C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.831+18C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.831+18C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.819+18C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.594+18C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.548+18C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.831+18C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.918+18C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.918+18C>G
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

12-51390590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390590
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390590
    reference: chr 12
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.918+10G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.831+10G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.594+10G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.831+10G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.819+10G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.831+10G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.548+10G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.918+10G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.831+10G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.831+10G>A
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

12-51390603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390603
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390603
    reference: chr 12
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.828C>T
  hgvsp: ENST00000541174.2:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.545C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.591C>T
  hgvsp: ENST00000546743.1:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.828C>T
  hgvsp: ENST00000262051.7:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.828C>T
  hgvsp: ENST00000547198.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.828C>T
  hgvsp: ENST00000262052.5:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.915C>T
  hgvsp: ENST00000394904.3:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.828C>T
  hgvsp: ENST00000546636.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.816C>T
  hgvsp: ENST00000545993.2:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.915C>T
  hgvsp: ENST00000547688.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val305Val
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

12-51390603-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390603
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390603
    reference: chr 12
allele count: 11
allele frequency: 9.06259783486299e-5
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.816C>G
  hgvsp: ENST00000545993.2:c.816C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.828C>G
  hgvsp: ENST00000262052.5:c.828C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.915C>G
  hgvsp: ENST00000394904.3:c.915C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.828C>G
  hgvsp: ENST00000262051.7:c.828C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.828C>G
  hgvsp: ENST00000541174.2:c.828C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.591C>G
  hgvsp: ENST00000546743.1:c.591C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.545C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.915C>G
  hgvsp: ENST00000547688.1:c.915C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.828C>G
  hgvsp: ENST00000546636.1:c.828C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.828C>G
  hgvsp: ENST00000547198.1:c.828C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val305Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

12-51390624-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390624
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390624
    reference: chr 12
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.807G>A
  hgvsp: ENSP00000262052.5:p.Met269Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.807G>A
  hgvsp: ENSP00000449008.1:p.Met269Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.795G>A
  hgvsp: ENSP00000442810.2:p.Met265Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.894G>A
  hgvsp: ENSP00000449200.1:p.Met298Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.807G>A
  hgvsp: ENSP00000446769.1:p.Met269Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.894G>A
  hgvsp: ENSP00000378364.3:p.Met298Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.807G>A
  hgvsp: ENSP00000262051.7:p.Met269Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.807G>A
  hgvsp: ENSP00000444542.2:p.Met269Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.524G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.570G>A
  hgvsp: ENSP00000446914.1:p.Met190Ile
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met298Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

12-51390651-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390651
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390651
    reference: chr 12
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.780G>C
  hgvsp: ENST00000541174.2:c.780G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.780G>C
  hgvsp: ENST00000546636.1:c.780G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.867G>C
  hgvsp: ENST00000394904.3:c.867G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.867G>C
  hgvsp: ENST00000547688.1:c.867G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.768G>C
  hgvsp: ENST00000545993.2:c.768G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.780G>C
  hgvsp: ENST00000547198.1:c.780G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.780G>C
  hgvsp: ENST00000262052.5:c.780G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.780G>C
  hgvsp: ENST00000262051.7:c.780G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.497G>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.543G>C
  hgvsp: ENST00000546743.1:c.543G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val289Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

12-51390651-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390651
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390651
    reference: chr 12
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.867G>A
  hgvsp: ENST00000547688.1:c.867G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.780G>A
  hgvsp: ENST00000546636.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.867G>A
  hgvsp: ENST00000394904.3:c.867G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.543G>A
  hgvsp: ENST00000546743.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.497G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.780G>A
  hgvsp: ENST00000262051.7:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.780G>A
  hgvsp: ENST00000547198.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.780G>A
  hgvsp: ENST00000541174.2:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.780G>A
  hgvsp: ENST00000262052.5:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.768G>A
  hgvsp: ENST00000545993.2:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val289Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

12-51390653-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390653
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390653
    reference: chr 12
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.778G>A
  hgvsp: ENSP00000444542.2:p.Val260Met
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.778G>A
  hgvsp: ENSP00000262051.7:p.Val260Met
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.865G>A
  hgvsp: ENSP00000378364.3:p.Val289Met
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.495G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.778G>A
  hgvsp: ENSP00000446769.1:p.Val260Met
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.541G>A
  hgvsp: ENSP00000446914.1:p.Val181Met
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.865G>A
  hgvsp: ENSP00000449200.1:p.Val289Met
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.778G>A
  hgvsp: ENSP00000262052.5:p.Val260Met
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.778G>A
  hgvsp: ENSP00000449008.1:p.Val260Met
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.766G>A
  hgvsp: ENSP00000442810.2:p.Val256Met
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val289Met
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

12-51390654-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390654
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390654
    reference: chr 12
allele count: 3
allele frequency: 2.471658317954126e-5
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.777C>T
  hgvsp: ENST00000262051.7:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.494C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.777C>T
  hgvsp: ENST00000541174.2:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.864C>T
  hgvsp: ENST00000547688.1:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.777C>T
  hgvsp: ENST00000262052.5:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*580C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.864C>T
  hgvsp: ENST00000394904.3:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.540C>T
  hgvsp: ENST00000546743.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.777C>T
  hgvsp: ENST00000547198.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.777C>T
  hgvsp: ENST00000546636.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.765C>T
  hgvsp: ENST00000545993.2:c.765C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile288Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/12-51390659-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390659
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390659
    reference: chr 12
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.772G>T
  hgvsp: ENSP00000449008.1:p.Gly258Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.772G>T
  hgvsp: ENSP00000262052.5:p.Gly258Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.760G>T
  hgvsp: ENSP00000442810.2:p.Gly254Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.859G>T
  hgvsp: ENSP00000449200.1:p.Gly287Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.772G>T
  hgvsp: ENSP00000262051.7:p.Gly258Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.535G>T
  hgvsp: ENSP00000446914.1:p.Gly179Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.772G>T
  hgvsp: ENSP00000446769.1:p.Gly258Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.859G>T
  hgvsp: ENSP00000378364.3:p.Gly287Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.772G>T
  hgvsp: ENSP00000444542.2:p.Gly258Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.489G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*575G>T
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly287Cys
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

12-51390668-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390668
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390668
    reference: chr 12
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.850C>G
  hgvsp: ENSP00000378364.3:p.Gln284Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.850C>G
  hgvsp: ENSP00000449200.1:p.Gln284Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.763C>G
  hgvsp: ENSP00000262051.7:p.Gln255Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.480C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.763C>G
  hgvsp: ENSP00000444542.2:p.Gln255Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.763C>G
  hgvsp: ENSP00000262052.5:p.Gln255Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.763C>G
  hgvsp: ENSP00000446769.1:p.Gln255Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.751C>G
  hgvsp: ENSP00000442810.2:p.Gln251Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.763C>G
  hgvsp: ENSP00000449008.1:p.Gln255Glu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*566C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.526C>G
  hgvsp: ENSP00000446914.1:p.Gln176Glu
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln284Glu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-51390678-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390678
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390678
    reference: chr 12
allele count: 5
allele frequency: 4.119634176485128e-5
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.753A>G
  hgvsp: ENST00000262052.5:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.753A>G
  hgvsp: ENST00000541174.2:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.840A>G
  hgvsp: ENST00000394904.3:c.840A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.753A>G
  hgvsp: ENST00000262051.7:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.840A>G
  hgvsp: ENST00000547688.1:c.840A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.753A>G
  hgvsp: ENST00000546636.1:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*556A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.741A>G
  hgvsp: ENST00000545993.2:c.741A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.753A>G
  hgvsp: ENST00000547198.1:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.516A>G
  hgvsp: ENST00000546743.1:c.516A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.470A>G
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro280Pro
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/12-51390685-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390685
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390685
    reference: chr 12
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.746G>T
  hgvsp: ENSP00000262051.7:p.Arg249Leu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.463G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.734G>T
  hgvsp: ENSP00000442810.2:p.Arg245Leu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.746G>T
  hgvsp: ENSP00000449008.1:p.Arg249Leu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.746G>T
  hgvsp: ENSP00000446769.1:p.Arg249Leu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.833G>T
  hgvsp: ENSP00000378364.3:p.Arg278Leu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.746G>T
  hgvsp: ENSP00000262052.5:p.Arg249Leu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*549G>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.746G>T
  hgvsp: ENSP00000444542.2:p.Arg249Leu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.833G>T
  hgvsp: ENSP00000449200.1:p.Arg278Leu
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.509G>T
  hgvsp: ENSP00000446914.1:p.Arg170Leu
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg278Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

12-51390685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390685
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390685
    reference: chr 12
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.509G>A
  hgvsp: ENSP00000446914.1:p.Arg170His
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.833G>A
  hgvsp: ENSP00000449200.1:p.Arg278His
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.746G>A
  hgvsp: ENSP00000446769.1:p.Arg249His
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.833G>A
  hgvsp: ENSP00000378364.3:p.Arg278His
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.746G>A
  hgvsp: ENSP00000449008.1:p.Arg249His
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.734G>A
  hgvsp: ENSP00000442810.2:p.Arg245His
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.746G>A
  hgvsp: ENSP00000444542.2:p.Arg249His
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.746G>A
  hgvsp: ENSP00000262052.5:p.Arg249His
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.463G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.746G>A
  hgvsp: ENSP00000262051.7:p.Arg249His
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*549G>A
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg278His
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

12-51390686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390686
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390686
    reference: chr 12
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.462C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.832C>T
  hgvsp: ENSP00000449200.1:p.Arg278Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.745C>T
  hgvsp: ENSP00000262052.5:p.Arg249Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.745C>T
  hgvsp: ENSP00000449008.1:p.Arg249Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.832C>T
  hgvsp: ENSP00000378364.3:p.Arg278Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.745C>T
  hgvsp: ENSP00000262051.7:p.Arg249Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*548C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.733C>T
  hgvsp: ENSP00000442810.2:p.Arg245Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.745C>T
  hgvsp: ENSP00000446769.1:p.Arg249Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.508C>T
  hgvsp: ENSP00000446914.1:p.Arg170Cys
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.745C>T
  hgvsp: ENSP00000444542.2:p.Arg249Cys
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg278Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

12-51390691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390691
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390691
    reference: chr 12
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.740G>A
  hgvsp: ENSP00000449008.1:p.Gly247Asp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*543G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.740G>A
  hgvsp: ENSP00000262052.5:p.Gly247Asp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.827G>A
  hgvsp: ENSP00000378364.3:p.Gly276Asp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.457G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.728G>A
  hgvsp: ENSP00000442810.2:p.Gly243Asp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.827G>A
  hgvsp: ENSP00000449200.1:p.Gly276Asp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.740G>A
  hgvsp: ENSP00000444542.2:p.Gly247Asp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.740G>A
  hgvsp: ENSP00000262051.7:p.Gly247Asp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.503G>A
  hgvsp: ENSP00000446914.1:p.Gly168Asp
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.740G>A
  hgvsp: ENSP00000446769.1:p.Gly247Asp
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly276Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

12-51390697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390697
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390697
    reference: chr 12
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.734G>A
  hgvsp: ENSP00000262051.7:p.Cys245Tyr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.734G>A
  hgvsp: ENSP00000449008.1:p.Cys245Tyr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.734G>A
  hgvsp: ENSP00000262052.5:p.Cys245Tyr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.734G>A
  hgvsp: ENSP00000446769.1:p.Cys245Tyr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.497G>A
  hgvsp: ENSP00000446914.1:p.Cys166Tyr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.722G>A
  hgvsp: ENSP00000442810.2:p.Cys241Tyr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.734G>A
  hgvsp: ENSP00000444542.2:p.Cys245Tyr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.451G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*537G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.821G>A
  hgvsp: ENSP00000449200.1:p.Cys274Tyr
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.821G>A
  hgvsp: ENSP00000378364.3:p.Cys274Tyr
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys274Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

12-51390702-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390702
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390702
    reference: chr 12
allele count: 9
allele frequency: 7.414730598121601e-5
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.729A>G
  hgvsp: ENST00000546636.1:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.717A>G
  hgvsp: ENST00000545993.2:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.492A>G
  hgvsp: ENST00000546743.1:c.492A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.729A>G
  hgvsp: ENST00000547198.1:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.729A>G
  hgvsp: ENST00000541174.2:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.729A>G
  hgvsp: ENST00000262051.7:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.816A>G
  hgvsp: ENST00000394904.3:c.816A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*532A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.446A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.816A>G
  hgvsp: ENST00000547688.1:c.816A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.729A>G
  hgvsp: ENST00000262052.5:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro272Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-51390707-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390707
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390707
    reference: chr 12
allele count: 3
allele frequency: 2.471576866040534e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.811G>A
  hgvsp: ENSP00000449200.1:p.Val271Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.724G>A
  hgvsp: ENSP00000444542.2:p.Val242Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.724G>A
  hgvsp: ENSP00000262052.5:p.Val242Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.811G>A
  hgvsp: ENSP00000378364.3:p.Val271Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.724G>A
  hgvsp: ENSP00000446769.1:p.Val242Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.487G>A
  hgvsp: ENSP00000446914.1:p.Val163Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.724G>A
  hgvsp: ENSP00000262051.7:p.Val242Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*527G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.712G>A
  hgvsp: ENSP00000442810.2:p.Val238Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.724G>A
  hgvsp: ENSP00000449008.1:p.Val242Ile
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.441G>A
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val271Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

12-51390708-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390708
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390708
    reference: chr 12
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*526C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.723C>T
  hgvsp: ENST00000262051.7:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.723C>T
  hgvsp: ENST00000547198.1:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.723C>T
  hgvsp: ENST00000262052.5:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.440C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.723C>T
  hgvsp: ENST00000546636.1:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.711C>T
  hgvsp: ENST00000545993.2:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.810C>T
  hgvsp: ENST00000394904.3:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.723C>T
  hgvsp: ENST00000541174.2:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.810C>T
  hgvsp: ENST00000547688.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.486C>T
  hgvsp: ENST00000546743.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe270Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

12-51390713-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390713
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390713
    reference: chr 12
allele count: 4
allele frequency: 3.295598727898891e-5
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.706A>G
  hgvsp: ENSP00000442810.2:p.Met236Val
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.718A>G
  hgvsp: ENSP00000446769.1:p.Met240Val
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.718A>G
  hgvsp: ENSP00000444542.2:p.Met240Val
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.718A>G
  hgvsp: ENSP00000262051.7:p.Met240Val
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.805A>G
  hgvsp: ENSP00000449200.1:p.Met269Val
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.718A>G
  hgvsp: ENSP00000449008.1:p.Met240Val
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.718A>G
  hgvsp: ENSP00000262052.5:p.Met240Val
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.805A>G
  hgvsp: ENSP00000378364.3:p.Met269Val
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*521A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.435A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.481A>G
  hgvsp: ENSP00000446914.1:p.Met161Val
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met269Val
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-51390714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390714
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390714
    reference: chr 12
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*520C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.480C>T
  hgvsp: ENST00000546743.1:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.804C>T
  hgvsp: ENST00000547688.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.804C>T
  hgvsp: ENST00000394904.3:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.434C>T
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.717C>T
  hgvsp: ENST00000262051.7:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.705C>T
  hgvsp: ENST00000545993.2:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.717C>T
  hgvsp: ENST00000547198.1:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.717C>T
  hgvsp: ENST00000262052.5:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.717C>T
  hgvsp: ENST00000541174.2:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.717C>T
  hgvsp: ENST00000546636.1:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly268Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

12-51390726-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390726
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390726
    reference: chr 12
allele count: 3
allele frequency: 2.471658317954126e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.792G>A
  hgvsp: ENST00000394904.3:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000450389
  ensembl transcript: ENST00000546488
  gene symbol: SLC11A2
  hgvsc: ENST00000546488.1:c.459G>A
  hgvsp: ENST00000546488.1:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.792G>A
  hgvsp: ENST00000547688.1:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.422G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.705G>A
  hgvsp: ENST00000546636.1:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.705G>A
  hgvsp: ENST00000547198.1:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.705G>A
  hgvsp: ENST00000541174.2:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.705G>A
  hgvsp: ENST00000262052.5:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.705G>A
  hgvsp: ENST00000262051.7:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*508G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.468G>A
  hgvsp: ENST00000546743.1:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.693G>A
  hgvsp: ENST00000545993.2:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12463
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln264Gln
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

12-51390727-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390727
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390727
    reference: chr 12
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.704A>G
  hgvsp: ENSP00000446769.1:p.Gln235Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.791A>G
  hgvsp: ENSP00000378364.3:p.Gln264Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.704A>G
  hgvsp: ENSP00000262051.7:p.Gln235Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.704A>G
  hgvsp: ENSP00000449008.1:p.Gln235Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.791A>G
  hgvsp: ENSP00000449200.1:p.Gln264Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*507A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.704A>G
  hgvsp: ENSP00000262052.5:p.Gln235Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.704A>G
  hgvsp: ENSP00000444542.2:p.Gln235Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.692A>G
  hgvsp: ENSP00000442810.2:p.Gln231Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000450389
  ensembl transcript: ENST00000546488
  gene symbol: SLC11A2
  hgvsc: ENST00000546488.1:c.458A>G
  hgvsp: ENSP00000450389.1:p.Gln153Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.421A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.467A>G
  hgvsp: ENSP00000446914.1:p.Gln156Arg
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln264Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

12-51390730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390730
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390730
    reference: chr 12
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*504G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.788G>A
  hgvsp: ENSP00000449200.1:p.Ser263Asn
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.701G>A
  hgvsp: ENSP00000446769.1:p.Ser234Asn
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.689G>A
  hgvsp: ENSP00000442810.2:p.Ser230Asn
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.788G>A
  hgvsp: ENSP00000378364.3:p.Ser263Asn
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.418G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.701G>A
  hgvsp: ENSP00000262052.5:p.Ser234Asn
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.701G>A
  hgvsp: ENSP00000449008.1:p.Ser234Asn
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.701G>A
  hgvsp: ENSP00000262051.7:p.Ser234Asn
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.464G>A
  hgvsp: ENSP00000446914.1:p.Ser155Asn
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000450389
  ensembl transcript: ENST00000546488
  gene symbol: SLC11A2
  hgvsc: ENST00000546488.1:c.455G>A
  hgvsp: ENSP00000450389.1:p.Ser152Asn
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.701G>A
  hgvsp: ENSP00000444542.2:p.Ser234Asn
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser263Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

12-51390737-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390737
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390737
    reference: chr 12
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.457A>G
  hgvsp: ENSP00000446914.1:p.Ser153Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.694A>G
  hgvsp: ENSP00000444542.2:p.Ser232Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.682A>G
  hgvsp: ENSP00000442810.2:p.Ser228Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.781A>G
  hgvsp: ENSP00000378364.3:p.Ser261Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000450389
  ensembl transcript: ENST00000546488
  gene symbol: SLC11A2
  hgvsc: ENST00000546488.1:c.448A>G
  hgvsp: ENSP00000450389.1:p.Ser150Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.694A>G
  hgvsp: ENSP00000446769.1:p.Ser232Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.694A>G
  hgvsp: ENSP00000262051.7:p.Ser232Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.694A>G
  hgvsp: ENSP00000262052.5:p.Ser232Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.694A>G
  hgvsp: ENSP00000449008.1:p.Ser232Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.781A>G
  hgvsp: ENSP00000449200.1:p.Ser261Gly
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*497A>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.411A>G
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser261Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

12-51390744-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390744
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390744
    reference: chr 12
allele count: 3
allele frequency: 2.472187886279357e-5
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000450389
  ensembl transcript: ENST00000546488
  gene symbol: SLC11A2
  hgvsc: ENST00000546488.1:c.441G>A
  hgvsp: ENST00000546488.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.687G>A
  hgvsp: ENST00000546636.1:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.404G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.687G>A
  hgvsp: ENST00000262051.7:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.675G>A
  hgvsp: ENST00000545993.2:c.675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.687G>A
  hgvsp: ENST00000547198.1:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*490G>A
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.687G>A
  hgvsp: ENST00000262052.5:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.774G>A
  hgvsp: ENST00000394904.3:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.687G>A
  hgvsp: ENST00000541174.2:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.774G>A
  hgvsp: ENST00000547688.1:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.450G>A
  hgvsp: ENST00000546743.1:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000447482
  ensembl transcript: ENST00000547579
  gene symbol: SLC11A2
  hgvsc: ENST00000547579.1:c.450G>A
  hgvsp: ENST00000547579.1:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val258Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

12-51390748-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390748
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390748
    reference: chr 12
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000447482
  ensembl transcript: ENST00000547579
  gene symbol: SLC11A2
  hgvsc: ENST00000547579.1:c.446C>G
  hgvsp: ENSP00000447482.1:p.Thr149Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000450389
  ensembl transcript: ENST00000546488
  gene symbol: SLC11A2
  hgvsc: ENST00000546488.1:c.437C>G
  hgvsp: ENSP00000450389.1:p.Thr146Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449008
  ensembl transcript: ENST00000546636
  gene symbol: SLC11A2
  hgvsc: ENST00000546636.1:c.683C>G
  hgvsp: ENSP00000449008.1:p.Thr228Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.683C>G
  hgvsp: ENSP00000262051.7:p.Thr228Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*486C>G
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.446C>G
  hgvsp: ENSP00000446914.1:p.Thr149Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000444542
  ensembl transcript: ENST00000541174
  gene symbol: SLC11A2
  hgvsc: ENST00000541174.2:c.683C>G
  hgvsp: ENSP00000444542.2:p.Thr228Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.671C>G
  hgvsp: ENSP00000442810.2:p.Thr224Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262052
  ensembl transcript: ENST00000262052
  gene symbol: SLC11A2
  hgvsc: ENST00000262052.5:c.683C>G
  hgvsp: ENSP00000262052.5:p.Thr228Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.770C>G
  hgvsp: ENSP00000378364.3:p.Thr257Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.770C>G
  hgvsp: ENSP00000449200.1:p.Thr257Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.683C>G
  hgvsp: ENSP00000446769.1:p.Thr228Arg
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.400C>G
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr257Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

12-51390751-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51390751
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 51390751
    reference: chr 12
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000262051
  ensembl transcript: ENST00000262051
  gene symbol: SLC11A2
  hgvsc: ENST00000262051.7:c.680T>C
  hgvsp: ENSP00000262051.7:p.Val227Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000449200
  ensembl transcript: ENST00000547688
  gene symbol: SLC11A2
  hgvsc: ENST00000547688.1:c.767T>C
  hgvsp: ENSP00000449200.1:p.Val256Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446653
  ensembl transcript: ENST00000547510
  gene symbol: SLC11A2
  hgvsc: ENST00000547510.1:c.*483T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446914
  ensembl transcript: ENST00000546743
  gene symbol: SLC11A2
  hgvsc: ENST00000546743.1:c.443T>C
  hgvsp: ENSP00000446914.1:p.Val148Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000442810
  ensembl transcript: ENST00000545993
  gene symbol: SLC11A2
  hgvsc: ENST00000545993.2:c.668T>C
  hgvsp: ENSP00000442810.2:p.Val223Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000110911
  ensembl transcript: ENST00000550061
  gene symbol: SLC11A2
  hgvsc: ENST00000550061.1:n.397T>C
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000378364
  ensembl transcript: ENST00000394904
  gene symbol: SLC11A2
  hgvsc: ENST00000394904.3:c.767T>C
  hgvsp: ENSP00000378364.3:p.Val256Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000450389
  ensembl transcript: ENST00000546488
  gene symbol: SLC11A2
  hgvsc: ENST00000546488.1:c.434T>C
  hgvsp: ENSP00000450389.1:p.Val145Ala
  variant of: http://identifiers.org/hgnc/10908
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000110911
  ensembl protein: ENSP00000446769
  ensembl transcript: ENST00000547198
  gene symbol: SLC11A2
  hgvsc: ENST00000547198.1:c.680T>C
  hgvsp: ENSP00000446769.1:p.Val227Ala
  variant of: http://identifiers.org/hgnc/10908
canonical: true
consequence: missense
filter: PASS
hgvs: p.Val256Ala
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26354
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5468
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4755
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4701
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.38e-1

DP
type: SiteQuality
SIO_000300: 2.599086e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.177e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.261e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.61e-1

FS
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2887
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4752
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5460
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26353
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4184
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.191e1

FS
type: SiteQuality
SIO_000300: 1.768e0

DP
type: SiteQuality
SIO_000300: 2.599514e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4752
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9703
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 2.599514e6

FS
type: SiteQuality
SIO_000300: 1.768e0

MQRankSum
type: SiteQuality
SIO_000300: -2.91e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5468
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2882
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.45e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

DP
type: SiteQuality
SIO_000300: 2.599394e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4704
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26354
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.84e0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e0

FS
type: SiteQuality
SIO_000300: 9.895e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.602e0

QD
type: SiteQuality
SIO_000300: 1.468e1

DP
type: SiteQuality
SIO_000300: 2.599513e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 26343
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9776
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.491983577571999e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 5.712e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.599986e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.21e0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
all individuals: 2447
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9793
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.303e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.662e0

MQRankSum
type: SiteQuality
SIO_000300: -1.091e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 7.94e-1

DP
type: SiteQuality
SIO_000300: 2.600011e6

QD
type: SiteQuality
SIO_000300: 1.843e1

VQSLOD
type: SiteQuality
SIO_000300: -2.149e0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4179
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

DP
type: SiteQuality
SIO_000300: 2.599982e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

FS
type: SiteQuality
SIO_000300: 1.1759e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.648e1

VQSLOD
type: SiteQuality
SIO_000300: -1.265e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 1.119e0

DP
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SIO_000300: 2.60005e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

QD
type: SiteQuality
SIO_000300: 1.504e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.630701551285019e-4
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.035e0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

BaseQRankSum
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SIO_000300: -5.584e0

DP
type: SiteQuality
SIO_000300: 2.600121e6

FS
type: SiteQuality
SIO_000300: 6.666e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2928e1

VQSLOD
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SIO_000300: -2.546e0

DP
type: SiteQuality
SIO_000300: 2.600122e6

ReadPosRankSum
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SIO_000300: -1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.48e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

ClippingRankSum
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SIO_000300: -8.44e-1

FS
type: SiteQuality
SIO_000300: 1.1436e1

MQ
type: SiteQuality
SIO_000300: 5.998e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 1.0e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.599886e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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QD
type: SiteQuality
SIO_000300: 1.483e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.24e-1

BaseQRankSum
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SIO_000300: 3.86e0

VQSLOD
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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FS
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e-1

BaseQRankSum
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SIO_000300: 2.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.599902e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.446e1

GenotypeQuality
all individuals: 5427
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 256

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.798399424512184e-4
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 241
allele frequency: 2.082973206568712e-2
allele num: 11570
num of homozygotes: 1

African
type: Population
allele count: 4
allele frequency: 3.844675124951942e-4
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.538e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.2e0

DP
type: SiteQuality
SIO_000300: 2.606657e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 2844
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923076923076923e-4
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

FS
type: SiteQuality
SIO_000300: 3.021e0

VQSLOD
type: SiteQuality
SIO_000300: 3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.16e-1

QD
type: SiteQuality
SIO_000300: 1.383e1

MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.598869e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 93
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GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 1

African
type: Population
allele count: 4
allele frequency: 3.917727717923604e-4
allele num: 10210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.261829652996846e-3
allele num: 6340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.393673110720562e-4
allele num: 66004
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736111111111111e-4
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.79318e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.231e0

DP
type: SiteQuality
SIO_000300: 2.618261e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: -1.499e2

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

QD
type: SiteQuality
SIO_000300: 3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.488e0

GenotypeQuality
all individuals: 26124
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variant carriers: 4

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4678
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GenotypeQuality
all individuals: 10009
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49707690001499e-5
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
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SIO_000300: 2.587578e6

FS
type: SiteQuality
SIO_000300: 2.452e0

QD
type: SiteQuality
SIO_000300: 1.298e1

MQRankSum
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SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.351e0

FS
type: SiteQuality
SIO_000300: 2.198e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-2

InbreedingCoeff
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MQ
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QD
type: SiteQuality
SIO_000300: 1.571e1

ClippingRankSum
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SIO_000300: 2.1e-1

BaseQRankSum
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MQRankSum
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SIO_000300: 4.91e-1

DP
type: SiteQuality
SIO_000300: 2.58721e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.426e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.24e0

VQSLOD
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SIO_000300: -2.312e0

QD
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SIO_000300: 1.293e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3547e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 2.58707e6

QD
type: SiteQuality
SIO_000300: 1.328e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

GenotypeQuality
all individuals: 10092
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26130
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4765
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

DP
type: SiteQuality
SIO_000300: 2.58707e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: -2.383e0

QD
type: SiteQuality
SIO_000300: 1.328e1

FS
type: SiteQuality
SIO_000300: 1.3547e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 2.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4169
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

DP
type: SiteQuality
SIO_000300: 2.586946e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.875e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.074e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-1

GenotypeQuality
all individuals: 4169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4764
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.441e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.329e0

MQ
type: SiteQuality
SIO_000300: 5.681e1

QD
type: SiteQuality
SIO_000300: 1.334e1

MQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

DP
type: SiteQuality
SIO_000300: 2.586942e6

FS
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.38e-1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2853
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4674
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26127
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4763
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

QD
type: SiteQuality
SIO_000300: 1.13e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

DP
type: SiteQuality
SIO_000300: 2.58677e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4673
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5432
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049223574554829e-4
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.287e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.356e0

DP
type: SiteQuality
SIO_000300: 2.586823e6

VQSLOD
type: SiteQuality
SIO_000300: 3.99e0

GenotypeQuality
all individuals: 4156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4742
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 4657
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5419
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10092
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26213
bin: 9.75e1
variant carriers: 324

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 306
allele frequency: 4.586330935251798e-3
allele num: 66720
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 2.268602540834846e-3
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

DP
type: SiteQuality
SIO_000300: 2.594233e6

FS
type: SiteQuality
SIO_000300: 1.188e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
all individuals: 2844
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 37
bin: 5.25e1
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GenotypeQuality
all individuals: 26015
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4671
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variant carriers: 0

GenotypeQuality
all individuals: 4747
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4168
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998141152485459e-5
allele num: 66708
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.442e1

DP
type: SiteQuality
SIO_000300: 2.579339e6

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e0

GenotypeQuality
all individuals: 26014
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 2830
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GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 4168
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variant carriers: 0

GenotypeQuality
all individuals: 2434
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variant carriers: 0

GenotypeQuality
all individuals: 4740
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.71e-1

FS
type: SiteQuality
SIO_000300: 1.342e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

DP
type: SiteQuality
SIO_000300: 2.576119e6

MQRankSum
type: SiteQuality
SIO_000300: 7.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
all individuals: 424
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 87

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 88
allele frequency: 8.481110254433308e-3
allele num: 10376
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 1.32e-1

VQSLOD
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SIO_000300: 6.36e0

QD
type: SiteQuality
SIO_000300: 1.424e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.625e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.23e-2

DP
type: SiteQuality
SIO_000300: 2.55768e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.198e0

FS
type: SiteQuality
SIO_000300: 8.827999999999999e0

QD
type: SiteQuality
SIO_000300: 1.088e1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.59e-1

DP
type: SiteQuality
SIO_000300: 2.550828e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.381e1

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.550607e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.173e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 5129
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.997720866070893e-5
allele num: 66692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.535048e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.501e0

FS
type: SiteQuality
SIO_000300: 9.004e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.909e1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.115e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.653e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: -3.716e-1

DP
type: SiteQuality
SIO_000300: 2.535519e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.706e0

QD
type: SiteQuality
SIO_000300: 1.373e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

FS
type: SiteQuality
SIO_000300: 7.73e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.694e0

ReadPosRankSum
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SIO_000300: 1.14e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731301939058172e-4
allele num: 11552
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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SIO_000300: 1.287e1

ClippingRankSum
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SIO_000300: -1.2e-2

VQSLOD
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MQRankSum
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FS
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SIO_000300: 6.512e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

InbreedingCoeff
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SIO_000300: 6.1e-3

DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16508
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QD
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MQRankSum
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 4.3e-3

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.542245e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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ClippingRankSum
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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Other
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European (Non-Finnish)
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East Asian
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allele frequency: 1.271676300578035e-3
allele num: 8650
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South Asian
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Latino
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

Other
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African
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Latino
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European (Finnish)
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East Asian
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South Asian
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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VQSLOD
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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South Asian
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Latino
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Other
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European (Non-Finnish)
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DP
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.897e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66730
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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QD
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MQRankSum
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ClippingRankSum
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DP
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 1.97e0

MQ
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
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African
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East Asian
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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QD
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MQ
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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QD
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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allele num: 66730
num of homozygotes: 0

European (Finnish)
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ClippingRankSum
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FS
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MQ
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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QD
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8642
num of homozygotes: 0

Other
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African
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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Other
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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MQ
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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MQ
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ReadPosRankSum
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DP
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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African
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East Asian
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Latino
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South Asian
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European (Finnish)
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66734
num of homozygotes: 0

African
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South Asian
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European (Finnish)
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Other
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East Asian
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Latino
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 6.726888333653661e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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East Asian
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Latino
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Other
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South Asian
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MQRankSum
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DP
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FS
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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African
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Latino
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European (Finnish)
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East Asian
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South Asian
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MQRankSum
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FS
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ClippingRankSum
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VQSLOD
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MQ
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QD
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DP
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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South Asian
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Latino
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QD
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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European (Finnish)
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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DP
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MQ
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
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FS
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InbreedingCoeff
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QD
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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African
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Latino
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Other
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European (Non-Finnish)
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South Asian
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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South Asian
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MQ
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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FS
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

DP
type: SiteQuality
SIO_000300: 2.540923e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.278e1