10-134166367-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166367
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166367
    reference: chr 10
allele count: 1
allele frequency: 9.000900090009001e-6
allele num: 111100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1110A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1110A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1110A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1110A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1110A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1074-19A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1110A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1110A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*17-43A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1110A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1110A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1110A>G
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

10-134166372-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166372
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166372
    reference: chr 10
allele count: 1
allele frequency: 8.824256115209487e-6
allele num: 113324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1115T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1115T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*17-38T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1115T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1115T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1115T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1115T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1074-14T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1115T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1115T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1115T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1115T>A
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

10-134166373-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166373
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166373
    reference: chr 10
allele count: 1
allele frequency: 8.78780955059142e-6
allele num: 113794
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1116T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1116T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1116T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1116T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1116T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1116T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1116T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1074-13T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*17-37T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1116T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1116T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1116T>G
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

10-134166374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166374
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166374
    reference: chr 10
allele count: 3
allele frequency: 2.628028803195683e-5
allele num: 114154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1117G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1117G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1117G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1117G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*17-36G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1117G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1117G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1117G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1117G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1074-12G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1117G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1117G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35274
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

10-134166398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166398
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166398
    reference: chr 10
allele count: 1
allele frequency: 8.45394291897741e-6
allele num: 118288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1141C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1141C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1141C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1141C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1141C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1141C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1086C>T
  hgvsp: ENST00000368615.3:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1141C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1141C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*17-12C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1141C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1141C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu362Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

10-134166399-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166399
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166399
    reference: chr 10
allele count: 9
allele frequency: 7.605462412114657e-5
allele num: 118336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1087A>G
  hgvsp: ENSP00000357604.3:p.Ile363Val
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1142A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1142A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1142A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1142A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1142A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1142A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*17-11A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1142A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1142A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1142A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1142A>G
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile363Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

10-134166401-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166401
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166401
    reference: chr 10
allele count: 3
allele frequency: 2.533227500717748e-5
allele num: 118426
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1144T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1144T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1144T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1144T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1089T>A
  hgvsp: ENST00000368615.3:c.1089T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1144T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*17-9T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1144T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1144T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1144T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1144T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1144T>A
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile363Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

10-134166405-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166405
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166405
    reference: chr 10
allele count: 1
allele frequency: 8.43668269636379e-6
allele num: 118530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1148C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1148C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1148C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1148C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*17-5C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1148C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1148C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1148C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1148C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1093C>T
  hgvsp: ENSP00000357604.3:p.Pro365Ser
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1148C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1148C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro365Ser
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

10-134166419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166419
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166419
    reference: chr 10
allele count: 2
allele frequency: 1.684976747320887e-5
allele num: 118696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*26G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1162G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1162G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1162G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1162G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1162G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1162G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1107G>A
  hgvsp: ENST00000368615.3:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1162G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1162G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1162G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1162G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln369Gln
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-134166420-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166420
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166420
    reference: chr 10
allele count: 1
allele frequency: 8.425877555147369e-6
allele num: 118682
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1163G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1163G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1163G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1163G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*27G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1108G>A
  hgvsp: ENSP00000357604.3:p.Ala370Thr
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1163G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1163G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1163G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1163G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1163G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1163G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala370Thr
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

10-134166420-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166420
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166419
    reference: chr 10
allele count: 1
allele frequency: 8.425877555147369e-6
allele num: 118682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1111delC
  hgvsp: ENSP00000357604.3:p.Leu371Ter
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1166delC
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*30delC
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1166delC
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1166delC
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1166delC
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1166delC
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1166delC
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1166delC
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1166delC
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1166delC
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1166delC
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu371Ter
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: GC
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/10-134166422-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166422
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166422
    reference: chr 10
allele count: 1
allele frequency: 8.425025696328374e-6
allele num: 118694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1165C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1165C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1165C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1110C>A
  hgvsp: ENST00000368615.3:c.1110C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1165C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1165C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1165C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*29C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1165C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1165C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1165C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1165C>A
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala370Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

10-134166429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166429
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166429
    reference: chr 10
allele count: 1
allele frequency: 8.429428821903027e-6
allele num: 118632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1172C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1172C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1172C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1172C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1172C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1117C>T
  hgvsp: ENSP00000357604.3:p.Arg373Trp
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1172C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*36C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1172C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1172C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1172C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1172C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10302
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg373Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

10-134166430-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166430
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166430
    reference: chr 10
allele count: 5
allele frequency: 4.215140785702242e-5
allele num: 118620
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1173G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1173G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1118G>A
  hgvsp: ENSP00000357604.3:p.Arg373Gln
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1173G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*37G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1173G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1173G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1173G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1173G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1173G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1173G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1173G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10358
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg373Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-134166430-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166430
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166430
    reference: chr 10
allele count: 1
allele frequency: 8.430281571404485e-6
allele num: 118620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1173G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1173G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1173G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1173G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1118G>T
  hgvsp: ENSP00000357604.3:p.Arg373Leu
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1173G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1173G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1173G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1173G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*37G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1173G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1173G>T
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg373Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

10-134166453-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166453
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166453
    reference: chr 10
allele count: 1
allele frequency: 8.499065102838687e-6
allele num: 117660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.1141G>C
  hgvsp: ENSP00000357604.3:p.Val381Leu
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*60G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1196G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1196G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1196G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1196G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1196G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1196G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1196G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1196G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1196G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1196G>C
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val381Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

10-134166465-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166465
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166465
    reference: chr 10
allele count: 1
allele frequency: 8.578242146619315e-6
allele num: 116574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*72C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1208C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1208C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*1C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1208C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1208C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1208C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1208C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1208C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1208C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1208C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1208C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9764
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

10-134166468-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166468
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166468
    reference: chr 10
allele count: 1
allele frequency: 8.58000858000858e-6
allele num: 116550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1211C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1211C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1211C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*4C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*75C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1211C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1211C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1211C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1211C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1211C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1211C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1211C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

10-134166470-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166470
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166470
    reference: chr 10
allele count: 2
allele frequency: 1.718626473722201e-5
allele num: 116372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*6G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1213G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1213G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*77G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1213G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1213G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1213G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1213G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1213G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1213G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1213G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1213G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10532
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum

10-134166473-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166473
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166473
    reference: chr 10
allele count: 1
allele frequency: 8.60229853416833e-6
allele num: 116248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1216A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1216A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*80A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1216A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1216A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1216A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*9A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1216A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1216A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1216A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1216A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1216A>G
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28787
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10387
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-134166478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166478
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166478
    reference: chr 10
allele count: 3
allele frequency: 2.600915522263837e-5
allele num: 115344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1221C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1221C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1221C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1221C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1221C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*85C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*14C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1221C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1221C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1221C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1221C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1221C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9785
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24881
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

10-134166488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166488
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166488
    reference: chr 10
allele count: 2
allele frequency: 1.750363200364075e-5
allele num: 114262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1231C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*95C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1231C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1231C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1231C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1231C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*24C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1231C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1231C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1231C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1231C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1231C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8859
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20098
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

10-134166489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166489
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166489
    reference: chr 10
allele count: 3
allele frequency: 2.628719638288178e-5
allele num: 114124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1232G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1232G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1232G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1232G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*96G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*25G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1232G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1232G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1232G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1232G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1232G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1232G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8388
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

10-134166493-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166493
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166493
    reference: chr 10
allele count: 3
allele frequency: 2.633704393018927e-5
allele num: 113908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*100T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*29T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1236T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1236T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1236T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1236T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1236T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1236T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1236T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1236T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1236T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1236T>C
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7687
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14731
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

10-134166494-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166494
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166494
    reference: chr 10
allele count: 1
allele frequency: 8.79909897226524e-6
allele num: 113648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1237G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1237G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1237G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1237G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1237G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1237G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*30G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1237G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1237G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*101G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1237G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1237G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15292
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

10-134166500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166500
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166500
    reference: chr 10
allele count: 5
allele frequency: 4.442785804410798e-5
allele num: 112542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1243G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1243G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1243G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1243G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1243G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*36G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1243G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1243G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1243G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*107G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1243G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1243G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10182
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15944
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

10-134166502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166502
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166502
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 110910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1245C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1245C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1245C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1245C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1245C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1245C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*38C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1245C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1245C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1245C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1245C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*109C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

10-134166503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166503
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166503
    reference: chr 10
allele count: 31
allele frequency: 2.811230412071968e-4
allele num: 110272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1246G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1246G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*39G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1246G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1246G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1246G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1246G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*110G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1246G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1246G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1246G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1246G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15704
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8272
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15383
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-134166503-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166503
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166503
    reference: chr 10
allele count: 3
allele frequency: 2.720545560069646e-5
allele num: 110272
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1246G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1246G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1246G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1246G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1246G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1246G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1246G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1246G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*39G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*110G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1246G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1246G>T
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8272
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15383
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

10-134166511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166511
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166511
    reference: chr 10
allele count: 7
allele frequency: 6.515628199638848e-5
allele num: 107434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1254C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1254C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*118C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1254C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1254C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1254C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*47C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1254C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1254C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1254C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1254C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1254C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14846
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9297
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

10-134166512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134166512
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134166512
    reference: chr 10
allele count: 81
allele frequency: 7.65769172591136e-4
allele num: 105776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1188+1255G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1073+1255G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.147+1255G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357604
  ensembl transcript: ENST00000368615
  gene symbol: LRRC27
  hgvsc: ENST00000368615.3:c.*48G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.887+1255G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1354+1255G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000342641
  ensembl transcript: ENST00000344079
  gene symbol: LRRC27
  hgvsc: ENST00000344079.5:c.*119G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.887+1255G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*16+1255G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+1255G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1073+1255G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.692+1255G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14701
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15069
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9314
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

10-134169249-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169249
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169249
    reference: chr 10
allele count: 1
allele frequency: 4.860031104199067e-5
allele num: 20576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.888-45T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+3992T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1074-45T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.693-45T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.888-45T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1074-45T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1355-45T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1189-45T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*17-45T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.148-45T>C
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10373
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18067
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

10-134169260-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169260
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169260
    reference: chr 10
allele count: 1
allele frequency: 4.8534265191225e-5
allele num: 20604
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1074-34T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*17-34T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4003T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1189-34T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1355-34T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.693-34T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.888-34T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1074-34T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.148-34T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.888-34T>C
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

10-134169284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169284
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169284
    reference: chr 10
allele count: 1
allele frequency: 4.836525440123815e-5
allele num: 20676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.693-10C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1074-10C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*17-10C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1189-10C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4027C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1355-10C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1074-10C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.148-10C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.888-10C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.888-10C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35243
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

10-134169286-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169286
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169286
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 20686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.148-8T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*17-8T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1074-8T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4029T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1074-8T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.888-8T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.888-8T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1189-8T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1355-8T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.693-8T>C
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1074-8T>C
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

10-134169306-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169306
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169306
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 20934
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.900A>G
  hgvsp: ENST00000368612.1:c.900A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1086A>G
  hgvsp: ENST00000368613.4:c.1086A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1086A>G
  hgvsp: ENST00000368614.3:c.1086A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.900A>G
  hgvsp: ENST00000368610.3:c.900A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.160A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1201A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4049A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*29A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1367A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.705A>G
  hgvsp: ENST00000432555.2:c.705A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10080
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4450
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Ala362Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS

10-134169309-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169309
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169309
    reference: chr 10
allele count: 1
allele frequency: 4.772814051164567e-5
allele num: 20952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.163G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4052G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.903G>T
  hgvsp: ENST00000368612.1:c.903G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1204G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1089G>T
  hgvsp: ENST00000368613.4:c.1089G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.903G>T
  hgvsp: ENST00000368610.3:c.903G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*32G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.708G>T
  hgvsp: ENST00000432555.2:c.708G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1370G>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1089G>T
  hgvsp: ENST00000368614.3:c.1089G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31940
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu363Leu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-134169310-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169310
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169310
    reference: chr 10
allele count: 2
allele frequency: 9.536524890329964e-5
allele num: 20972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1205C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*33C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.904C>T
  hgvsp: ENSP00000357601.1:p.Gln302Ter
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.164C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1371C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1090C>T
  hgvsp: ENSP00000357603.3:p.Gln364Ter
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.709C>T
  hgvsp: ENSP00000407949.2:p.Gln237Ter
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.904C>T
  hgvsp: ENSP00000357599.3:p.Gln302Ter
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1090C>T
  hgvsp: ENSP00000357602.4:p.Gln364Ter
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4053C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11399
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln364Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

10-134169323-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169323
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169323
    reference: chr 10
allele count: 2
allele frequency: 9.416195856873823e-5
allele num: 21240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.722A>G
  hgvsp: ENSP00000407949.2:p.Glu241Gly
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1218A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*46A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1103A>G
  hgvsp: ENSP00000357603.3:p.Glu368Gly
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.917A>G
  hgvsp: ENSP00000357601.1:p.Glu306Gly
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1103A>G
  hgvsp: ENSP00000357602.4:p.Glu368Gly
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1384A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.177A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4066A>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.917A>G
  hgvsp: ENSP00000357599.3:p.Glu306Gly
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14569
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30928
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu368Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff

10-134169325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169325
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169325
    reference: chr 10
allele count: 26
allele frequency: 1.221919353322681e-3
allele num: 21278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.179C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1220C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.919C>T
  hgvsp: ENSP00000357599.3:p.Arg307Ter
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1105C>T
  hgvsp: ENSP00000357602.4:p.Arg369Ter
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.919C>T
  hgvsp: ENSP00000357601.1:p.Arg307Ter
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.724C>T
  hgvsp: ENSP00000407949.2:p.Arg242Ter
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1105C>T
  hgvsp: ENSP00000357603.3:p.Arg369Ter
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*48C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1386C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4068C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15167
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30426
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg369Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

10-134169335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169335
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169335
    reference: chr 10
allele count: 1
allele frequency: 4.651595497255559e-5
allele num: 21498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.929G>A
  hgvsp: ENSP00000357599.3:p.Arg310Lys
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1396G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.929G>A
  hgvsp: ENSP00000357601.1:p.Arg310Lys
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1115G>A
  hgvsp: ENSP00000357603.3:p.Arg372Lys
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1115G>A
  hgvsp: ENSP00000357602.4:p.Arg372Lys
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.734G>A
  hgvsp: ENSP00000407949.2:p.Arg245Lys
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1230G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*58G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4078G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.189G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg372Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

10-134169342-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169342
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169342
    reference: chr 10
allele count: 1
allele frequency: 4.660700969425801e-5
allele num: 21456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.936G>C
  hgvsp: ENSP00000357601.1:p.Arg312Ser
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*65G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1403G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1122G>C
  hgvsp: ENSP00000357602.4:p.Arg374Ser
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.936G>C
  hgvsp: ENSP00000357599.3:p.Arg312Ser
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.196G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1122G>C
  hgvsp: ENSP00000357603.3:p.Arg374Ser
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1237G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4085G>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.741G>C
  hgvsp: ENSP00000407949.2:p.Arg247Ser
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg374Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

10-134169345-GAGGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169345
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169341
    reference: chr 10
allele count: 1
allele frequency: 4.648136097424932e-5
allele num: 21514
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1132_1135delGAAG
  hgvsp: ENSP00000357602.4:p.Glu378SerfsTer23
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.946_949delGAAG
  hgvsp: ENSP00000357599.3:p.Glu316SerfsTer23
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1132_1135delGAAG
  hgvsp: ENSP00000357603.3:p.Glu378SerfsTer23
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1247_1250delGAAG
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.206_209delGAAG
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4095_407+4098delGAAG
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.946_949delGAAG
  hgvsp: ENSP00000357601.1:p.Glu316SerfsTer23
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*75_*78delGAAG
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1413_1416delGAAG
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.751_754delGAAG
  hgvsp: ENSP00000407949.2:p.Glu251SerfsTer23
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu378SerfsTer23
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: GAGGA
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

10-134169355-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169355
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169355
    reference: chr 10
allele count: 1
allele frequency: 4.653327128897162e-5
allele num: 21490
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1135G>A
  hgvsp: ENSP00000357603.3:p.Glu379Lys
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4098G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1416G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1250G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.209G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*78G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.949G>A
  hgvsp: ENSP00000357601.1:p.Glu317Lys
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.949G>A
  hgvsp: ENSP00000357599.3:p.Glu317Lys
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1135G>A
  hgvsp: ENSP00000357602.4:p.Glu379Lys
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.754G>A
  hgvsp: ENSP00000407949.2:p.Glu252Lys
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29569
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4369
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu379Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/10-134169358-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169358
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169358
    reference: chr 10
allele count: 1
allele frequency: 4.671587405400355e-5
allele num: 21406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1138C>A
  hgvsp: ENSP00000357603.3:p.Leu380Ile
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.212C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.757C>A
  hgvsp: ENSP00000407949.2:p.Leu253Ile
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.952C>A
  hgvsp: ENSP00000357599.3:p.Leu318Ile
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1253C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*81C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.952C>A
  hgvsp: ENSP00000357601.1:p.Leu318Ile
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4101C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1419C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1138C>A
  hgvsp: ENSP00000357602.4:p.Leu380Ile
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13671
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu380Ile
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

10-134169362-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169362
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169362
    reference: chr 10
allele count: 1
allele frequency: 4.682086337672066e-5
allele num: 21358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*85G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1142G>A
  hgvsp: ENSP00000357603.3:p.Ser381Asn
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1142G>A
  hgvsp: ENSP00000357602.4:p.Ser381Asn
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.956G>A
  hgvsp: ENSP00000357601.1:p.Ser319Asn
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4105G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.216G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.761G>A
  hgvsp: ENSP00000407949.2:p.Ser254Asn
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1257G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1423G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.956G>A
  hgvsp: ENSP00000357599.3:p.Ser319Asn
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser381Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

10-134169368-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169368
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169368
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 21312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4111T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1148T>G
  hgvsp: ENSP00000357602.4:p.Leu383Arg
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.962T>G
  hgvsp: ENSP00000357601.1:p.Leu321Arg
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.962T>G
  hgvsp: ENSP00000357599.3:p.Leu321Arg
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1263T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1148T>G
  hgvsp: ENSP00000357603.3:p.Leu383Arg
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*91T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.767T>G
  hgvsp: ENSP00000407949.2:p.Leu256Arg
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.222T>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1429T>G
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4234
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Leu383Arg
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS

10-134169377-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169377
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169377
    reference: chr 10
allele count: 36
allele frequency: 1.711026615969582e-3
allele num: 21040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1438C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1157C>T
  hgvsp: ENSP00000357603.3:p.Pro386Leu
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1272C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4120C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.971C>T
  hgvsp: ENSP00000357601.1:p.Pro324Leu
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.231C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1157C>T
  hgvsp: ENSP00000357602.4:p.Pro386Leu
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*100C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.971C>T
  hgvsp: ENSP00000357599.3:p.Pro324Leu
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.776C>T
  hgvsp: ENSP00000407949.2:p.Pro259Leu
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33608
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8936
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro386Leu
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

10-134169378-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169378
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169378
    reference: chr 10
allele count: 1
allele frequency: 4.749691270067446e-5
allele num: 21054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1158G>A
  hgvsp: ENST00000368613.4:c.1158G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4121G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.972G>A
  hgvsp: ENST00000368612.1:c.972G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1439G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1158G>A
  hgvsp: ENST00000368614.3:c.1158G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1273G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.232G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.972G>A
  hgvsp: ENST00000368610.3:c.972G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*101G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.777G>A
  hgvsp: ENST00000432555.2:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33717
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro386Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

10-134169379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169379
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169379
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 21046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.233C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1159C>T
  hgvsp: ENSP00000357602.4:p.Arg387Trp
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*102C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1159C>T
  hgvsp: ENSP00000357603.3:p.Arg387Trp
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1440C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.778C>T
  hgvsp: ENSP00000407949.2:p.Arg260Trp
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4122C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.973C>T
  hgvsp: ENSP00000357601.1:p.Arg325Trp
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.973C>T
  hgvsp: ENSP00000357599.3:p.Arg325Trp
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1274C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8669
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33819
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32819
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg387Trp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-134169379-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169379
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169378
    reference: chr 10
allele count: 1
allele frequency: 4.751496721467262e-5
allele num: 21046
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1161delG
  hgvsp: ENSP00000357603.3:p.Arg388GlyfsTer14
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1161delG
  hgvsp: ENSP00000357602.4:p.Arg388GlyfsTer14
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.975delG
  hgvsp: ENSP00000357601.1:p.Arg326GlyfsTer14
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.975delG
  hgvsp: ENSP00000357599.3:p.Arg326GlyfsTer14
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.780delG
  hgvsp: ENSP00000407949.2:p.Arg261GlyfsTer14
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1442delG
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4124delG
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*104delG
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.235delG
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1276delG
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33819
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg388GlyfsTer14
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: CG
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

10-134169380-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169380
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169380
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 20932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.234G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1441G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1160G>A
  hgvsp: ENSP00000357603.3:p.Arg387Gln
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.974G>A
  hgvsp: ENSP00000357601.1:p.Arg325Gln
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.974G>A
  hgvsp: ENSP00000357599.3:p.Arg325Gln
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.779G>A
  hgvsp: ENSP00000407949.2:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4123G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*103G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1160G>A
  hgvsp: ENSP00000357602.4:p.Arg387Gln
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1275G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33964
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg387Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

10-134169394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169394
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169394
    reference: chr 10
allele count: 39
allele frequency: 1.914768263943441e-3
allele num: 20368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.789+4C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1451+4C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.984+4C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1170+4C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*113+4C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4137C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1170+4C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.984+4C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1285+4C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.244+4C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 33578
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1170+4C>T
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

10-134169399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169399
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169399
    reference: chr 10
allele count: 2
allele frequency: 9.900009900009901e-5
allele num: 20202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.984+9C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*113+9C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1170+9C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1451+9C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1170+9C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4142C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1285+9C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.789+9C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.244+9C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.984+9C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3567
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3803
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

10-134169401-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169401
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169401
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 20144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1451+11C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1170+11C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4144C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1285+11C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.789+11C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.244+11C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.984+11C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1170+11C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*113+11C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.984+11C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33281
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30066
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum

10-134169402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169402
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169402
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 20122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.984+12G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1170+12G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4145G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.244+12G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*113+12G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1170+12G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1285+12G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.789+12G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1451+12G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.984+12G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33216
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/10-134169403-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169403
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169403
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 20086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1451+13C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.984+13C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1170+13C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.244+13C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*113+13C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1170+13C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1285+13C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.984+13C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4146C>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.789+13C>A
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32965
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3856
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29531
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

10-134169403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169403
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169403
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 20086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*113+13C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.244+13C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.984+13C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.789+13C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4146C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1451+13C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1285+13C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1170+13C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.984+13C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1170+13C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32965
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29531
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

10-134169407-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169407
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169407
    reference: chr 10
allele count: 1
allele frequency: 5.015548199418196e-5
allele num: 19938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1285+17C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1170+17C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4150C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.984+17C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.789+17C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1451+17C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1170+17C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*113+17C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.244+17C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.984+17C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28925
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

10-134169414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169414
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169414
    reference: chr 10
allele count: 1
allele frequency: 5.040830728904123e-5
allele num: 19838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*113+24C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.984+24C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1170+24C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1170+24C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.984+24C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.244+24C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.789+24C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1451+24C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1285+24C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4157C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

10-134169415-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169415
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169415
    reference: chr 10
allele count: 60
allele frequency: 3.026329062846767e-3
allele num: 19826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1285+25G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1170+25G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.984+25G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.789+25G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1170+25G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1451+25G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*113+25G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4158G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.984+25G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.244+25G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 31782
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 2.25e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

10-134169433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169433
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169433
    reference: chr 10
allele count: 9
allele frequency: 4.631058968817536e-4
allele num: 19434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1451+43G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.984+43G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1170+43G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*113+43G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1285+43G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1170+43G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.407+4176G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.789+43G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.984+43G>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.244+43G>A
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29366
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19595
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-134169436-GGTGGGTGGGTGCTCACAGGCATCCCTGTCCATGGAGGATGAGCCGAGACCTGGGGGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134169436
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134169379
    reference: chr 10
allele count: 3
allele frequency: 1.550547860243953e-4
allele num: 19348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 29503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: GGTGGGTGGGTGCTCACAGGCATCCCTGTCCATGGAGGATGAGCCGAGACCTGGGGGT
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

10-134174921-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134174921
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134174921
    reference: chr 10
allele count: 13
allele frequency: 1.072660362724227e-4
allele num: 121194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.985-40C>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1452-40C>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1286-40C>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*114-40C>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.790-40C>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.245-40C>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1171-40C>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.408-40C>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.985-40C>G
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1171-40C>G
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

10-134174934-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134174934
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134174934
    reference: chr 10
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.985-27A>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.985-27A>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*114-27A>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.408-27A>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.245-27A>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1286-27A>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1452-27A>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1171-27A>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.790-27A>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1171-27A>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

10-134174942-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134174942
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134174942
    reference: chr 10
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.245-19T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1286-19T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.408-19T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.985-19T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.790-19T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1171-19T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1171-19T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*114-19T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1452-19T>C
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.985-19T>C
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

10-134174943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134174943
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134174943
    reference: chr 10
allele count: 3
allele frequency: 2.475288371095233e-5
allele num: 121198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*114-18C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1171-18C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1171-18C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1286-18C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.408-18C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.790-18C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.245-18C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.985-18C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.985-18C>T
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1452-18C>T
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

10-134174945-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134174945
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 134174945
    reference: chr 10
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472387
  gene symbol: LRRC27
  hgvsc: ENST00000472387.1:n.408-16T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357599
  ensembl transcript: ENST00000368610
  gene symbol: LRRC27
  hgvsc: ENST00000368610.3:c.985-16T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357602
  ensembl transcript: ENST00000368613
  gene symbol: LRRC27
  hgvsc: ENST00000368613.4:c.1171-16T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000462656
  gene symbol: LRRC27
  hgvsc: ENST00000462656.1:n.1286-16T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357601
  ensembl transcript: ENST00000368612
  gene symbol: LRRC27
  hgvsc: ENST00000368612.1:c.985-16T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000472556
  gene symbol: LRRC27
  hgvsc: ENST00000472556.1:n.245-16T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000357603
  ensembl transcript: ENST00000368614
  gene symbol: LRRC27
  hgvsc: ENST00000368614.3:c.1171-16T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl transcript: ENST00000475747
  gene symbol: LRRC27
  hgvsc: ENST00000475747.1:n.1452-16T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000376413
  ensembl transcript: ENST00000392638
  gene symbol: LRRC27
  hgvsc: ENST00000392638.2:c.*114-16T>A
  variant of: http://identifiers.org/hgnc/29346
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148814
  ensembl protein: ENSP00000407949
  ensembl transcript: ENST00000432555
  gene symbol: LRRC27
  hgvsc: ENST00000432555.2:c.790-16T>A
  variant of: http://identifiers.org/hgnc/29346
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 228
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36166
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7031
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1630
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4505
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3092
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632226683641824e-5
allele num: 61266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.126e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 1.706359e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.074e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

QD
type: SiteQuality
SIO_000300: 5.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.45e-1

GenotypeDepth
all individuals: 719
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3459
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7031
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.072041166380789e-4
allele num: 9328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-1

FS
type: SiteQuality
SIO_000300: 3.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 1.298e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

DP
type: SiteQuality
SIO_000300: 1.739265e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

GenotypeDepth
all individuals: 1010
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3251
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7032
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62708
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.361323155216285e-5
allele num: 15720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.921e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -7.783e-1

DP
type: SiteQuality
SIO_000300: 1.745835e6

GenotypeDepth
all individuals: 472
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3260
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3037
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7033
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 802
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.768717215069146e-5
allele num: 62910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 1.75225e6

QD
type: SiteQuality
SIO_000300: 1.218e1

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

FS
type: SiteQuality
SIO_000300: 1.999e0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.162e0

GenotypeDepth
all individuals: 286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7034
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43557
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536239899222663e-5
allele num: 65094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.116e-1

DP
type: SiteQuality
SIO_000300: 1.807231e6

MQ
type: SiteQuality
SIO_000300: 5.879e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.243e0

QD
type: SiteQuality
SIO_000300: 1.053e1

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

GenotypeDepth
all individuals: 2325
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3673
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.041016031646887e-4
allele num: 9606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.147792942333702e-5
allele num: 16266
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.344665885111372e-4
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.143260842855388e-5
allele num: 65112
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.352e0

DP
type: SiteQuality
SIO_000300: 1.808223e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.08e-1

FS
type: SiteQuality
SIO_000300: 5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

VQSLOD
type: SiteQuality
SIO_000300: 9.18e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 3690
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.755926251097454e-4
allele num: 11390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535107918086642e-5
allele num: 65142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.251e1

FS
type: SiteQuality
SIO_000300: 6.055e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.167e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 1.808942e6

GenotypeDepth
all individuals: 1639
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variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 921
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 476
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variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 666
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533742331288344e-5
allele num: 65200
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

BaseQRankSum
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SIO_000300: 4.23e0

QD
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SIO_000300: 1.092e1

VQSLOD
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SIO_000300: -1.196e0

FS
type: SiteQuality
SIO_000300: 3.522e0

MQ
type: SiteQuality
SIO_000300: 5.725e1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e0

DP
type: SiteQuality
SIO_000300: 1.810815e6

GenotypeDepth
all individuals: 286
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43558
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variant carriers: 0

GenotypeQuality
all individuals: 32
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1156
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GenotypeQuality
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GenotypeQuality
all individuals: 1000
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GenotypeQuality
all individuals: 667
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 831
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223690651003426e-4
allele num: 16344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.82e-1

DP
type: SiteQuality
SIO_000300: 1.81509e6

MQ
type: SiteQuality
SIO_000300: 5.992e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.097e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

GenotypeDepth
all individuals: 195
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variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 829
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 667
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GenotypeQuality
all individuals: 920
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 43342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7034
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532097441397273e-5
allele num: 65270
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
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SIO_000300: 2.1e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.011e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQ
type: SiteQuality
SIO_000300: 6.099e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.814857e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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FS
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SIO_000300: 5.011e0

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 8.82e-1

MQRankSum
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SIO_000300: 2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.206e1

MQ
type: SiteQuality
SIO_000300: 6.099e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 826
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.531862745098039e-5
allele num: 65280
num of homozygotes: 0

QD
type: SiteQuality
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.815102e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65258
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.038205980066445e-4
allele num: 9632
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

FS
type: SiteQuality
SIO_000300: 4.49e-1

ReadPosRankSum
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QD
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MQRankSum
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DP
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SIO_000300: 1.815988e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.038421599169263e-4
allele num: 9630
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.224439818782907e-4
allele num: 16334
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.169864295741694e-4
allele num: 8548
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.532801961986511e-5
allele num: 65240
num of homozygotes: 0

InbreedingCoeff
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QD
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MQRankSum
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FS
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MQ
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SIO_000300: 5.922e1

BaseQRankSum
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DP
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SIO_000300: 1.815331e6

ClippingRankSum
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SIO_000300: -4.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 65240
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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ClippingRankSum
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SIO_000300: -4.97e-1

QD
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.173601679219657e-5
allele num: 16198
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.786295e6

BaseQRankSum
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SIO_000300: 7.000000000000001e-2

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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SIO_000300: 0.0e0

QD
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ClippingRankSum
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SIO_000300: 7.000000000000001e-2

MQRankSum
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SIO_000300: 1.73e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.557486839236208e-5
allele num: 64206
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.686e1

ClippingRankSum
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SIO_000300: 1.19e0

InbreedingCoeff
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DP
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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African
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allele num: 9530
num of homozygotes: 0

South Asian
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European (Finnish)
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Latino
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East Asian
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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FS
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DP
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ClippingRankSum
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.248127808287569e-4
allele num: 16024
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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MQ
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FS
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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African
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South Asian
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VQSLOD
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QD
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MQ
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FS
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.712683401929058e-5
allele num: 63658
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South Asian
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MQRankSum
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DP
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QD
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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South Asian
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Latino
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Other
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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QD
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DP
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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QD
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BaseQRankSum
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DP
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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European (Finnish)
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Other
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QD
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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Latino
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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VQSLOD
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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African
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South Asian
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allele frequency: 0.0e0
allele num: 15506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.062e0

FS
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SIO_000300: 0.0e0

MQ
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InbreedingCoeff
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MQRankSum
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SIO_000300: -8.66e-1

ReadPosRankSum
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SIO_000300: -3.83e-1

ClippingRankSum
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DP
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SIO_000300: 1.51922e6

QD
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SIO_000300: 2.084e1

BaseQRankSum
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SIO_000300: -6.7e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60946
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
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allele count: 30
allele frequency: 3.277972027972028e-3
allele num: 9152
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

Latino
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allele frequency: 1.002807862013638e-4
allele num: 9972
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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QD
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ClippingRankSum
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 4.33e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.281593541823909e-5
allele num: 60946
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.482561908466225e-5
allele num: 15426
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

ClippingRankSum
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -2.457e0

FS
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SIO_000300: 1.03e0

InbreedingCoeff
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SIO_000300: 6.7e-3

DP
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SIO_000300: 1.515277e6

MQRankSum
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SIO_000300: 2.5e-1

QD
type: SiteQuality
SIO_000300: 1.267e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
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SIO_000300: 4.3e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

East Asian
type: Population
allele count: 5
allele frequency: 6.629541235746487e-4
allele num: 7542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.682085786375105e-5
allele num: 59450
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.593696426216537e-5
allele num: 15166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.414e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.25e-1

DP
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SIO_000300: 1.49718e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.209e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 79
allele frequency: 8.900405588102749e-3
allele num: 8876
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58470
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.16169476869866e-4
allele num: 9252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15024
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

DP
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 9.379999999999999e-1

MQRankSum
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SIO_000300: 1.85e-1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.631082062454611e-4
allele num: 2754
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -2.166e0

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 1.26806999746386e-4
allele num: 7886
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Latino
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allele frequency: 0.0e0
allele num: 390
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8692
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: -1.843e0

FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8740
num of homozygotes: 0

East Asian
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allele count: 0
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African
type: Population
allele count: 1
allele frequency: 3.654970760233918e-4
allele num: 2736
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.66e-2

ClippingRankSum
type: SiteQuality
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MQ
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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FS
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DP
type: SiteQuality
SIO_000300: 4.36458e5

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.737e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.56e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.63e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.596e1

VQSLOD
type: SiteQuality
SIO_000300: -2.957e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 4.39992e5

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2750
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -1.38e0

MQ
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InbreedingCoeff
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SIO_000300: -6.53e-2

MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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VQSLOD
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QD
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FS
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SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.483679525222552e-3
allele num: 674
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8920
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.38e-2

FS
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SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

MQRankSum
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QD
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SIO_000300: 9.779999999999999e0

DP
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ClippingRankSum
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SIO_000300: -6.899999999999999e-1

BaseQRankSum
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SIO_000300: -2.386e0

VQSLOD
type: SiteQuality
SIO_000300: -4.801e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.118818527634818e-4
allele num: 8938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263264274886306e-4
allele num: 7916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

DP
type: SiteQuality
SIO_000300: 4.93339e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 7.924e0

VQSLOD
type: SiteQuality
SIO_000300: -1.173e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.35e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 720
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.524614996213078e-4
allele num: 7922
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: 4.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.156e0

FS
type: SiteQuality
SIO_000300: 1.672e0

DP
type: SiteQuality
SIO_000300: 5.13566e5

QD
type: SiteQuality
SIO_000300: 1.081e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.78e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 4.291845493562232e-3
allele num: 466
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

African
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allele count: 2
allele frequency: 7.25689404934688e-4
allele num: 2756
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 2.651515151515152e-3
allele num: 7920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.093852548676438e-4
allele num: 9142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.78e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

MQRankSum
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FS
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SIO_000300: 1.15e0

QD
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ReadPosRankSum
type: SiteQuality
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DP
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ClippingRankSum
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SIO_000300: -3.82e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 2.049180327868853e-3
allele num: 488
num of homozygotes: 0

European (Finnish)
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African
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East Asian
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South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
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DP
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele frequency: 3.646973012399708e-4
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South Asian
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European (Non-Finnish)
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allele count: 0
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allele num: 9280
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Latino
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Other
type: Population
allele count: 0
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allele num: 202
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European (Finnish)
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num of homozygotes: 0

FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 1.261352169525732e-4
allele num: 7928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.58e-2

VQSLOD
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BaseQRankSum
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SIO_000300: -2.63e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQ
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SIO_000300: 5.894e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.133e0

DP
type: SiteQuality
SIO_000300: 5.23491e5

FS
type: SiteQuality
SIO_000300: 9.409999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.133e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.074344649763644e-4
allele num: 9308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.17851e5

MQRankSum
type: SiteQuality
SIO_000300: -1.092e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.399e0

QD
type: SiteQuality
SIO_000300: 7.91e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -2.194e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.76e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.08201687946332e-4
allele num: 9242
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.051e-1

DP
type: SiteQuality
SIO_000300: 5.10201e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.57e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 1.206e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

QD
type: SiteQuality
SIO_000300: 1.118e1

GenotypeQuality
all individuals: 250
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263264274886306e-4
allele num: 7916
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.105e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.04132e5

MQRankSum
type: SiteQuality
SIO_000300: -1.001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.982e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.869e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 250
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.892e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.320000000000001e-2

QD
type: SiteQuality
SIO_000300: 8.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 4.97465e5

FS
type: SiteQuality
SIO_000300: 3.68e0

GenotypeQuality
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variant carriers: 38

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 34
allele frequency: 1.257396449704142e-2
allele num: 2704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.107665042091272e-4
allele num: 9028
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 92
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Latino
type: Population
allele count: 1
allele frequency: 2.252252252252252e-3
allele num: 444
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 5.3e-1

BaseQRankSum
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SIO_000300: 2.24e0

MQRankSum
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SIO_000300: 4.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -6.77e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

FS
type: SiteQuality
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DP
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SIO_000300: 4.81205e5

QD
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SIO_000300: 1.455e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.266464032421479e-4
allele num: 7896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9046
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.461e0

MQRankSum
type: SiteQuality
SIO_000300: 7.71e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.51e1

ClippingRankSum
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SIO_000300: 7.27e-1

BaseQRankSum
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SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.78484e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.078e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 5.15e-2

DP
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SIO_000300: 4.77035e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 250
bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.106684373616645e-4
allele num: 9036
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.38e0

FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.15e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.77035e5

QD
type: SiteQuality
SIO_000300: 1.078e1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2690
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
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FS
type: SiteQuality
SIO_000300: 7.182e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.515e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 4.72077e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
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allele count: 1
allele frequency: 3.810975609756098e-4
allele num: 2624
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 2.92472024415056e-3
allele num: 7864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

European (Non-Finnish)
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allele count: 15
allele frequency: 1.748659361156447e-3
allele num: 8578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -7.51e-2

MQRankSum
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SIO_000300: 4.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 4.40946e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 2.617801047120419e-3
allele num: 382
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.834355828220859e-4
allele num: 2608
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.67e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 4.32644e5

VQSLOD
type: SiteQuality
SIO_000300: -1.055e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 626
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 7854
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.69e-2

MQ
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7852
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 624
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2604
num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2600
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 620
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

BaseQRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
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FS
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DP
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

GenotypeQuality
all individuals: 3638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.204238921001927e-4
allele num: 8304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7844
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 4.19712e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

GenotypeQuality
all individuals: 724
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.9032006245121e-4
allele num: 2562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.152e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.820000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.02e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.357e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.11747e5

GenotypeQuality
all individuals: 292
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4432
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 62

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
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variant carriers: 3

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 313
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 2
allele frequency: 1.098901098901099e-2
allele num: 182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

South Asian
type: Population
allele count: 58
allele frequency: 7.39795918367347e-3
allele num: 7840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.07e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

DP
type: SiteQuality
SIO_000300: 4.11356e5

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

GenotypeQuality
all individuals: 418
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 477
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 981
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 630
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 500
bin: 7.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.125e-3
allele num: 8000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.84706e5

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 1.297e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.54e-2

QD
type: SiteQuality
SIO_000300: 1.522e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1755
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19197
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variant carriers: 1

GenotypeQuality
all individuals: 965
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variant carriers: 0

GenotypeQuality
all individuals: 816
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 257
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variant carriers: 0

GenotypeQuality
all individuals: 437
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variant carriers: 0

GenotypeQuality
all individuals: 10477
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GenotypeQuality
all individuals: 497
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variant carriers: 1

GenotypeQuality
all individuals: 1920
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GenotypeQuality
all individuals: 642
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.852080123266564e-4
allele num: 7788
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.17e-1

DP
type: SiteQuality
SIO_000300: 3.84557e5

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.959e0

FS
type: SiteQuality
SIO_000300: 2.371e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: -2.394e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e0

QD
type: SiteQuality
SIO_000300: 1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.690000000000001e-2

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42619
bin: 9.75e1
variant carriers: 13

Latino
type: Population
allele count: 6
allele frequency: 5.189413596263622e-4
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.051145748866264e-4
allele num: 66594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

DP
type: SiteQuality
SIO_000300: 3.593405e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

FS
type: SiteQuality
SIO_000300: 1.139e0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

QD
type: SiteQuality
SIO_000300: 1.294e1

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2639
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2929
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
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GenotypeQuality
all individuals: 1316
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.202e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 2.106e0

QD
type: SiteQuality
SIO_000300: 1.545e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.593713e6

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 2320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
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GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 8.25e1
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GenotypeQuality
all individuals: 2930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.287e1

DP
type: SiteQuality
SIO_000300: 3.59395e6

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.536e0

GenotypeQuality
all individuals: 42618
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003093185981561e-5
allele num: 66598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.247e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.88e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

DP
type: SiteQuality
SIO_000300: 3.594003e6

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.564e0

GenotypeQuality
all individuals: 1470
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2932
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42616
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0